Wall clock time and date at job start Wed Apr 1 2020 03:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00099 * 2 1 4 4 H 1.48498 * 109.47042 * 240.00341 * 3 2 1 5 5 H 1.48503 * 109.46848 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47177 * 120.00342 * 3 2 1 7 7 C 1.38811 * 120.00464 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00525 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99545 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99876 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46983 * 179.97438 * 10 9 7 12 12 H 1.08994 * 110.05388 * 306.41391 * 11 10 9 13 13 C 1.54264 * 110.03370 * 67.83389 * 11 10 9 14 14 C 1.55031 * 104.28582 * 142.80180 * 13 11 10 15 15 C 1.54885 * 102.67780 * 322.23277 * 14 13 11 16 16 H 1.09007 * 110.48990 * 279.02503 * 15 14 13 17 17 N 1.46510 * 110.48504 * 156.51722 * 15 14 13 18 18 C 1.34771 * 119.99794 * 88.24014 * 17 15 14 19 19 O 1.21713 * 120.00237 * 359.97438 * 18 17 15 20 20 C 1.46546 * 119.99737 * 179.97438 * 18 17 15 21 21 C 1.37957 * 126.22343 * 179.97438 * 20 18 17 22 22 C 1.39795 * 107.12958 * 179.77018 * 21 20 18 23 23 Cl 1.73597 * 126.06355 * 180.30098 * 22 21 20 24 24 C 1.35717 * 107.87498 * 0.41672 * 22 21 20 25 25 Cl 1.73599 * 125.58836 * 179.84572 * 24 22 21 26 26 N 1.35671 * 108.82885 * 359.58092 * 24 22 21 27 27 H 0.97003 * 125.69485 * 180.26946 * 26 24 22 28 28 C 1.53885 * 110.03228 * 184.99632 * 11 10 9 29 29 H 0.97000 * 120.00015 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00287 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47385 * 59.99894 * 10 9 7 32 32 H 1.09002 * 109.46968 * 299.99810 * 10 9 7 33 33 H 1.09005 * 110.48690 * 261.57389 * 13 11 10 34 34 H 1.08999 * 110.48986 * 24.07678 * 13 11 10 35 35 H 1.09000 * 110.87437 * 203.89880 * 14 13 11 36 36 H 1.08997 * 110.69327 * 80.48394 * 14 13 11 37 37 H 0.96992 * 119.99714 * 268.24021 * 17 15 14 38 38 H 1.08006 * 126.43449 * 0.04608 * 21 20 18 39 39 H 1.08992 * 110.03080 * 121.42984 * 28 11 10 40 40 H 1.08999 * 110.02493 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3594 -4.7086 0.8243 13 6 0.3043 -4.8663 -1.3418 14 6 0.1423 -6.3796 -1.6372 15 6 1.4872 -6.9682 -1.1437 16 1 2.2634 -6.8300 -1.8966 17 7 1.3368 -8.3889 -0.8191 18 6 1.5129 -9.3211 -1.7763 19 8 1.7965 -8.9828 -2.9106 20 6 1.3630 -10.7423 -1.4515 21 6 1.5128 -11.7987 -2.3260 22 6 1.2870 -12.9708 -1.5984 23 17 1.3584 -14.5897 -2.2208 24 6 0.9996 -12.6184 -0.3197 25 17 0.6388 -13.7178 0.9744 26 7 1.0461 -11.2664 -0.2170 27 1 0.8836 -10.7541 0.5906 28 6 1.8161 -6.1562 0.1260 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 0.0002 31 1 2.6848 -3.7145 0.8894 32 1 2.6847 -3.7145 -0.8906 33 1 -0.6710 -4.3893 -1.2449 34 1 0.8870 -4.3847 -2.1270 35 1 0.0124 -6.5550 -2.7052 36 1 -0.6919 -6.7952 -1.0721 37 1 1.1104 -8.6585 0.0847 38 1 1.7624 -11.7327 -3.3748 39 1 1.4766 -6.6937 1.0113 40 1 2.8893 -5.9762 0.1871 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486205334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:07 Heat of formation + Delta-G solvation = -26.227881 kcal Electronic energy + Delta-G solvation = -24286.605291 eV Core-core repulsion = 20380.542790 eV Total energy + Delta-G solvation = -3906.062502 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.67372 -40.74888 -39.16491 -37.91510 -37.52534 -36.49455 -34.97154 -33.01223 -32.29094 -30.68184 -30.11288 -28.73194 -26.25024 -24.26737 -23.90860 -22.20468 -21.63282 -21.52631 -20.92778 -20.17689 -19.04229 -17.70072 -17.37316 -16.73650 -16.67575 -16.03814 -15.95909 -15.69724 -15.42512 -15.21011 -15.02246 -14.83070 -14.58472 -14.43094 -14.25511 -13.56659 -13.23444 -13.01002 -12.95320 -12.83409 -12.75703 -12.50730 -12.47676 -12.20158 -12.10939 -11.99670 -11.76986 -11.74021 -11.57415 -11.40639 -11.28947 -10.89698 -10.27482 -10.14416 -9.40479 -8.97388 -7.94463 -5.22439 0.00289 0.30963 1.02031 1.03971 1.47202 1.50060 1.56158 1.84169 2.09979 2.19640 2.56705 3.38788 3.51969 3.59325 3.67198 3.74142 3.88298 4.15893 4.19225 4.40681 4.44976 4.48459 4.50155 4.60446 4.66197 4.77364 4.89919 4.98533 5.05815 5.07081 5.14308 5.19805 5.24491 5.40442 5.47445 5.49123 5.56520 5.87570 6.28344 6.38097 7.00457 7.34736 8.12613 8.35330 9.28810 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.032422 B = 0.001664 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.399661 B =16820.459070 C =17248.752376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.972 3.028 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.155 3.845 11 C -0.087 4.087 12 H 0.074 0.926 13 C -0.110 4.110 14 C -0.122 4.122 15 C 0.148 3.852 16 H 0.081 0.919 17 N -0.702 5.702 18 C 0.593 3.407 19 O -0.558 6.558 20 C -0.019 4.019 21 C -0.095 4.095 22 C -0.113 4.113 23 Cl -0.027 7.027 24 C 0.106 3.894 25 Cl 0.019 6.981 26 N -0.504 5.504 27 H 0.443 0.557 28 C -0.108 4.108 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.021 0.979 32 H 0.016 0.984 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.412 0.588 38 H 0.166 0.834 39 H 0.099 0.901 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.888 -32.599 2.415 32.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.091 0.909 9 N -0.387 5.387 10 C 0.029 3.971 11 C -0.106 4.106 12 H 0.093 0.907 13 C -0.149 4.149 14 C -0.161 4.161 15 C 0.043 3.957 16 H 0.099 0.901 17 N -0.353 5.353 18 C 0.380 3.620 19 O -0.436 6.436 20 C -0.133 4.133 21 C -0.122 4.122 22 C -0.148 4.148 23 Cl 0.002 6.998 24 C -0.039 4.039 25 Cl 0.048 6.952 26 N -0.107 5.107 27 H 0.286 0.714 28 C -0.147 4.147 29 H 0.060 0.940 30 H 0.206 0.794 31 H 0.039 0.961 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.249 0.751 38 H 0.184 0.816 39 H 0.118 0.882 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.213 -32.339 1.825 32.413 hybrid contribution -0.262 1.127 0.675 1.340 sum 0.951 -31.211 2.500 31.326 Atomic orbital electron populations 1.69799 1.06530 1.26093 1.59506 1.25553 0.96421 1.01059 1.03800 0.85229 0.77224 0.79260 0.78153 1.20580 1.22117 1.20332 1.19610 0.91473 0.85579 1.41216 0.90854 1.42556 1.05663 1.01153 1.89311 1.20996 0.93856 0.84904 0.97326 1.21774 0.96931 0.93893 0.98043 0.90720 1.22256 0.99976 0.95885 0.96748 1.22819 0.97570 0.94534 1.01171 1.21783 0.97681 0.78398 0.97812 0.90060 1.45786 1.70760 1.05980 1.12804 1.16955 0.76702 0.83434 0.84908 1.90898 1.49591 1.81305 1.21832 1.20111 1.15012 0.92893 0.85331 1.21285 1.02192 0.88117 1.00558 1.19700 1.14728 0.88280 0.92045 1.98359 1.97362 1.17508 1.86605 1.20645 1.09501 0.82817 0.90969 1.98453 1.92952 1.57435 1.46406 1.41771 1.53244 1.04378 1.11265 0.71395 1.22302 1.01349 0.93842 0.97171 0.94031 0.79350 0.96103 0.96653 0.92462 0.93152 0.92110 0.89749 0.75088 0.81640 0.88222 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.18 13.06 21.65 0.28 -58.89 16 2 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 3 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.25 -13.82 9.99 84.03 0.84 -12.98 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 9 N -0.74 -37.37 5.45 -343.46 -1.87 -39.24 16 10 C 0.16 5.94 5.31 86.38 0.46 6.40 16 11 C -0.09 -2.46 2.96 -10.07 -0.03 -2.49 16 12 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 13 C -0.11 -3.23 6.08 31.72 0.19 -3.03 16 14 C -0.12 -2.76 6.59 31.93 0.21 -2.55 16 15 C 0.15 2.95 3.18 46.06 0.15 3.10 16 16 H 0.08 2.00 7.61 -2.38 -0.02 1.98 16 17 N -0.70 -10.13 5.16 -441.51 -2.28 -12.41 16 18 C 0.59 11.46 7.78 86.41 0.67 12.14 16 19 O -0.56 -15.81 16.56 -4.39 -0.07 -15.88 16 20 C -0.02 -0.29 7.06 40.31 0.28 -0.01 16 21 C -0.09 -1.58 10.64 22.58 0.24 -1.34 16 22 C -0.11 -1.71 6.66 22.06 0.15 -1.56 16 23 Cl -0.03 -0.40 29.12 -2.72 -0.08 -0.48 16 24 C 0.11 1.28 7.75 83.51 0.65 1.93 16 25 Cl 0.02 0.19 29.13 -2.72 -0.08 0.11 16 26 N -0.50 -4.64 6.01 -174.51 -1.05 -5.69 16 27 H 0.44 1.08 8.19 -92.71 -0.76 0.32 16 28 C -0.11 -2.07 6.19 31.32 0.19 -1.88 16 29 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 30 H 0.37 19.91 7.55 -92.71 -0.70 19.21 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.02 0.61 8.01 -2.39 -0.02 0.59 16 33 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.05 1.70 7.76 -2.39 -0.02 1.68 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.41 2.81 7.47 -92.71 -0.69 2.12 16 38 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 39 H 0.10 1.28 7.72 -2.39 -0.02 1.26 16 40 H 0.08 1.54 7.67 -2.39 -0.02 1.52 16 Total: -1.00 -70.98 367.94 0.31 -70.67 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -1.04 Total: 19.80 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 4.47 Total: -6.19 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -4.92 Total: -116.24 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.07 Total: -15.88 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -0.16 Total: -0.37 kcal Total: -70.98 0.31 -70.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486205334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.443 kcal (2) G-P(sol) polarization free energy of solvation -70.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds