Wall clock time and date at job start Wed Apr 1 2020 02:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00104 * 2 1 4 4 C 1.53002 * 109.46999 * 269.99588 * 3 2 1 5 5 N 1.46896 * 109.47137 * 179.97438 * 4 3 2 6 6 C 1.46905 * 111.00327 * 179.97438 * 5 4 3 7 7 C 1.50691 * 109.47306 * 179.97438 * 6 5 4 8 8 O 1.21298 * 120.00291 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99991 * 180.02562 * 7 6 5 10 10 C 1.37102 * 120.00207 * 180.02562 * 9 7 6 11 11 H 1.07996 * 119.99830 * 359.97438 * 10 9 7 12 12 C 1.38946 * 119.99887 * 180.02562 * 10 9 7 13 13 N 1.31413 * 120.00502 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99747 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47327 * 59.99914 * 14 12 10 16 16 H 1.48499 * 109.46988 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47229 * 299.99394 * 14 12 10 18 18 C 1.34779 * 119.99888 * 179.97438 * 2 1 3 19 19 O 1.21656 * 120.00033 * 184.64815 * 18 2 1 20 20 C 1.47049 * 119.99828 * 4.65061 * 18 2 1 21 21 C 1.44497 * 123.49189 * 319.50218 * 20 18 2 22 22 C 1.32693 * 113.09696 * 180.02562 * 21 20 18 23 23 S 1.75499 * 110.63315 * 0.02562 * 22 21 20 24 24 C 1.36225 * 123.48773 * 139.52554 * 20 18 2 25 25 Cl 1.73602 * 124.60810 * 359.96123 * 24 20 18 26 26 H 1.08998 * 109.47435 * 264.38455 * 1 2 3 27 27 H 1.09000 * 109.47105 * 24.38930 * 1 2 3 28 28 H 1.09006 * 109.46990 * 144.38865 * 1 2 3 29 29 H 1.09003 * 109.47186 * 29.99292 * 3 2 1 30 30 H 1.08998 * 109.47136 * 150.00140 * 3 2 1 31 31 H 1.08994 * 109.47024 * 300.00040 * 4 3 2 32 32 H 1.09003 * 109.47188 * 60.00291 * 4 3 2 33 33 H 1.00905 * 111.00169 * 56.04645 * 5 4 3 34 34 H 1.08995 * 109.46958 * 300.00332 * 6 5 4 35 35 H 1.09004 * 109.46438 * 59.99917 * 6 5 4 36 36 H 0.97001 * 119.99680 * 0.02562 * 9 7 6 37 37 H 0.96999 * 120.00103 * 180.02562 * 13 12 10 38 38 H 1.07998 * 123.45512 * 0.04784 * 21 20 18 39 39 H 1.08002 * 124.68820 * 180.26945 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1865 2.9827 -1.4426 6 6 3.4504 3.4384 -2.8140 7 6 4.2025 4.7435 -2.7738 8 8 4.4909 5.2448 -1.7076 9 7 4.5548 5.3540 -3.9226 10 6 5.2395 6.5412 -3.8861 11 1 5.4962 6.9875 -2.9367 12 6 5.6021 7.1707 -5.0705 13 7 5.2893 6.6280 -6.2257 14 14 6.5345 8.7887 -5.0207 15 1 7.8228 8.5959 -4.3077 16 1 6.8006 9.2495 -6.4070 17 1 5.7216 9.8066 -4.3077 18 6 2.1389 -1.1672 0.0005 19 8 3.3524 -1.1690 0.0859 20 6 1.4072 -2.4386 -0.1022 21 6 0.1632 -2.7005 0.5848 22 6 -0.3176 -3.9140 0.3466 23 16 0.7421 -4.7970 -0.7386 24 6 1.8322 -3.4918 -0.8545 25 17 3.2867 -3.5032 -1.8022 26 1 -0.3634 -0.1006 1.0227 27 1 -0.3633 0.9360 -0.4244 28 1 -0.3633 -0.8355 -0.5984 29 1 1.6084 2.0284 0.5137 30 1 3.1499 1.1383 0.5138 31 1 3.0416 0.9506 -1.9562 32 1 1.5002 1.8407 -1.9564 33 1 4.0440 2.9056 -0.9163 34 1 4.0469 2.6908 -3.3368 35 1 2.5051 3.5801 -3.3379 36 1 4.3238 4.9533 -4.7753 37 1 5.5428 7.0673 -7.0525 38 1 -0.3254 -1.9819 1.2262 39 1 -1.2363 -4.3033 0.7599 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493720666.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:01 Heat of formation + Delta-G solvation = -29.436513 kcal Electronic energy + Delta-G solvation = -24314.542044 eV Core-core repulsion = 20410.384111 eV Total energy + Delta-G solvation = -3904.157932 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.46516 -38.28498 -37.67593 -36.86833 -36.36278 -34.91455 -33.78376 -31.22032 -30.34469 -29.80299 -27.13119 -26.46296 -25.00057 -23.70434 -22.26575 -21.16206 -19.55668 -19.16742 -18.60191 -17.85574 -17.02075 -16.59051 -16.24200 -15.51166 -15.45438 -15.20177 -14.51935 -14.43791 -14.14483 -14.11078 -13.90294 -13.74274 -13.51166 -13.27783 -13.14061 -12.93990 -12.58183 -12.21831 -12.06373 -11.87454 -11.61243 -11.49234 -11.47369 -11.29186 -11.09383 -10.94442 -10.42130 -10.19347 -10.15555 -9.47426 -9.33694 -9.04073 -8.93644 -8.43094 -8.05775 -7.93399 -6.38988 -3.79819 0.15457 0.54547 1.20513 1.51874 1.75855 2.59431 2.84072 3.22400 3.27663 3.32389 3.93860 4.10717 4.16625 4.43594 4.49615 4.57784 4.81787 4.97210 4.97616 5.12215 5.21190 5.21885 5.29578 5.33590 5.38500 5.51784 5.54763 5.77319 5.87749 5.90805 6.01527 6.21837 6.31682 7.05017 7.19845 7.57623 7.65949 7.87987 8.08813 8.64089 9.20359 9.57007 10.08603 10.78739 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.001846 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.342067 B =15166.221335 C =15798.771352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.607 5.607 3 C 0.118 3.882 4 C 0.046 3.954 5 N -0.666 5.666 6 C 0.052 3.948 7 C 0.441 3.559 8 O -0.583 6.583 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.932 3.068 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.575 3.425 19 O -0.515 6.515 20 C -0.146 4.146 21 C -0.104 4.104 22 C -0.227 4.227 23 S 0.225 5.775 24 C -0.132 4.132 25 Cl 0.015 6.985 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.351 0.649 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.161 0.839 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.157 -25.882 10.331 32.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.340 5.340 3 C -0.005 4.005 4 C -0.085 4.085 5 N -0.299 5.299 6 C -0.080 4.080 7 C 0.227 3.773 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.759 3.241 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.361 3.639 19 O -0.391 6.391 20 C -0.165 4.165 21 C -0.133 4.133 22 C -0.362 4.362 23 S 0.489 5.511 24 C -0.278 4.278 25 Cl 0.044 6.956 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.171 0.829 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.178 0.822 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -15.742 -26.519 10.253 32.499 hybrid contribution 1.047 1.396 -0.465 1.806 sum -14.694 -25.123 9.789 30.707 Atomic orbital electron populations 1.22077 0.79310 1.03861 1.01701 1.47638 1.07170 1.05764 1.73448 1.21466 0.98439 0.83347 0.97245 1.22261 0.99099 0.90618 0.96532 1.60035 1.28433 1.27730 1.13699 1.21654 1.00225 0.96110 0.90052 1.19789 0.85174 0.87312 0.85044 1.90522 1.59289 1.67252 1.29640 1.41855 1.50058 1.21369 1.06765 1.19660 1.31008 0.97694 0.94519 0.87949 1.25270 0.98203 0.99897 0.94644 1.69607 1.47127 1.40168 0.97483 0.85905 0.79825 0.81367 0.77032 1.19914 1.21006 1.19878 1.17510 0.86789 0.82740 0.76903 1.90868 1.13058 1.86880 1.48258 1.20278 0.97687 0.95725 1.02821 1.21298 0.93655 0.97415 1.00903 1.25575 1.05749 0.98743 1.06139 1.83285 1.11558 1.12815 1.43482 1.25255 0.97920 1.00791 1.03839 1.98432 1.30877 1.98027 1.68303 0.92230 0.90204 0.90805 0.89033 0.89425 0.95159 0.91088 0.82948 0.93824 0.89628 0.77456 0.91841 0.82151 0.80493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 9.00 59.85 0.54 1.00 16 2 N -0.61 -6.22 2.87 -182.99 -0.53 -6.75 16 3 C 0.12 1.38 5.68 -4.04 -0.02 1.35 16 4 C 0.05 0.62 6.01 -3.82 -0.02 0.59 16 5 N -0.67 -11.28 6.13 -115.06 -0.70 -11.99 16 6 C 0.05 0.97 6.17 -4.98 -0.03 0.94 16 7 C 0.44 10.76 7.82 -10.99 -0.09 10.67 16 8 O -0.58 -16.22 15.78 5.54 0.09 -16.13 16 9 N -0.56 -14.67 5.29 -10.97 -0.06 -14.73 16 10 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 11 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.95 13.05 55.50 0.72 -24.23 16 14 Si 0.93 21.40 29.55 -169.99 -5.02 16.37 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 18 C 0.57 7.12 7.25 -12.69 -0.09 7.03 16 19 O -0.52 -8.32 15.62 5.23 0.08 -8.24 16 20 C -0.15 -1.43 5.18 -104.59 -0.54 -1.97 16 21 C -0.10 -0.64 8.12 -39.01 -0.32 -0.95 16 22 C -0.23 -1.05 11.11 28.84 0.32 -0.73 16 23 S 0.22 1.36 23.02 -107.50 -2.47 -1.11 16 24 C -0.13 -1.28 6.85 30.01 0.21 -1.07 16 25 Cl 0.01 0.17 28.02 -51.86 -1.45 -1.29 16 26 H 0.06 0.26 7.05 -51.93 -0.37 -0.11 16 27 H 0.08 0.45 8.03 -51.93 -0.42 0.03 16 28 H 0.07 0.41 6.00 -51.93 -0.31 0.09 16 29 H 0.09 0.96 8.07 -51.93 -0.42 0.54 16 30 H 0.09 1.17 7.36 -51.93 -0.38 0.79 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.35 6.25 8.43 -39.29 -0.33 5.92 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 37 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.16 0.64 6.07 -52.49 -0.32 0.32 16 39 H 0.18 0.29 8.06 -52.49 -0.42 -0.13 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -34.75 364.02 -8.64 -43.39 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -4.49 Total: 10.54 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -0.29 Total: 8.68 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.56 Total: -57.69 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: 0.17 Total: -24.37 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.47 Total: -1.11 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -1.45 Total: -1.29 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.75 -8.64 -43.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493720666.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.954 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds