Wall clock time and date at job start Wed Apr 1 2020 02:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00104 * 2 1 4 4 C 1.53002 * 109.46999 * 269.99588 * 3 2 1 5 5 N 1.46896 * 109.47137 * 179.97438 * 4 3 2 6 6 C 1.46905 * 111.00327 * 179.97438 * 5 4 3 7 7 C 1.50691 * 109.47306 * 179.97438 * 6 5 4 8 8 O 1.21298 * 120.00291 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99991 * 180.02562 * 7 6 5 10 10 C 1.37102 * 120.00207 * 180.02562 * 9 7 6 11 11 H 1.07996 * 119.99830 * 359.97438 * 10 9 7 12 12 C 1.38946 * 119.99887 * 180.02562 * 10 9 7 13 13 N 1.31413 * 120.00502 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99747 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47327 * 59.99914 * 14 12 10 16 16 H 1.48499 * 109.46988 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47229 * 299.99394 * 14 12 10 18 18 C 1.34779 * 119.99888 * 179.97438 * 2 1 3 19 19 O 1.21656 * 120.00033 * 184.64815 * 18 2 1 20 20 C 1.47049 * 119.99828 * 4.65061 * 18 2 1 21 21 C 1.44497 * 123.49189 * 319.50218 * 20 18 2 22 22 C 1.32693 * 113.09696 * 180.02562 * 21 20 18 23 23 S 1.75499 * 110.63315 * 0.02562 * 22 21 20 24 24 C 1.36225 * 123.48773 * 139.52554 * 20 18 2 25 25 Cl 1.73602 * 124.60810 * 359.96123 * 24 20 18 26 26 H 1.08998 * 109.47435 * 264.38455 * 1 2 3 27 27 H 1.09000 * 109.47105 * 24.38930 * 1 2 3 28 28 H 1.09006 * 109.46990 * 144.38865 * 1 2 3 29 29 H 1.09003 * 109.47186 * 29.99292 * 3 2 1 30 30 H 1.08998 * 109.47136 * 150.00140 * 3 2 1 31 31 H 1.08994 * 109.47024 * 300.00040 * 4 3 2 32 32 H 1.09003 * 109.47188 * 60.00291 * 4 3 2 33 33 H 1.00905 * 111.00169 * 56.04645 * 5 4 3 34 34 H 1.08995 * 109.46958 * 300.00332 * 6 5 4 35 35 H 1.09004 * 109.46438 * 59.99917 * 6 5 4 36 36 H 0.97001 * 119.99680 * 0.02562 * 9 7 6 37 37 H 0.96999 * 120.00103 * 180.02562 * 13 12 10 38 38 H 1.07998 * 123.45512 * 0.04784 * 21 20 18 39 39 H 1.08002 * 124.68820 * 180.26945 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1865 2.9827 -1.4426 6 6 3.4504 3.4384 -2.8140 7 6 4.2025 4.7435 -2.7738 8 8 4.4909 5.2448 -1.7076 9 7 4.5548 5.3540 -3.9226 10 6 5.2395 6.5412 -3.8861 11 1 5.4962 6.9875 -2.9367 12 6 5.6021 7.1707 -5.0705 13 7 5.2893 6.6280 -6.2257 14 14 6.5345 8.7887 -5.0207 15 1 7.8228 8.5959 -4.3077 16 1 6.8006 9.2495 -6.4070 17 1 5.7216 9.8066 -4.3077 18 6 2.1389 -1.1672 0.0005 19 8 3.3524 -1.1690 0.0859 20 6 1.4072 -2.4386 -0.1022 21 6 0.1632 -2.7005 0.5848 22 6 -0.3176 -3.9140 0.3466 23 16 0.7421 -4.7970 -0.7386 24 6 1.8322 -3.4918 -0.8545 25 17 3.2867 -3.5032 -1.8022 26 1 -0.3634 -0.1006 1.0227 27 1 -0.3633 0.9360 -0.4244 28 1 -0.3633 -0.8355 -0.5984 29 1 1.6084 2.0284 0.5137 30 1 3.1499 1.1383 0.5138 31 1 3.0416 0.9506 -1.9562 32 1 1.5002 1.8407 -1.9564 33 1 4.0440 2.9056 -0.9163 34 1 4.0469 2.6908 -3.3368 35 1 2.5051 3.5801 -3.3379 36 1 4.3238 4.9533 -4.7753 37 1 5.5428 7.0673 -7.0525 38 1 -0.3254 -1.9819 1.2262 39 1 -1.2363 -4.3033 0.7599 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493720666.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:00 Heat of formation + Delta-G solvation = -55.469164 kcal Electronic energy + Delta-G solvation = -24315.670904 eV Core-core repulsion = 20410.384111 eV Total energy + Delta-G solvation = -3905.286793 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.070 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28929 -40.18404 -38.40325 -37.56402 -37.47086 -36.23371 -35.68846 -33.29987 -31.30288 -30.56059 -28.23078 -27.50407 -26.35429 -25.03164 -23.26867 -21.83597 -21.14480 -20.19650 -19.91170 -19.21533 -17.97735 -17.68726 -17.50188 -16.98644 -16.55751 -16.30742 -16.11918 -15.70701 -15.34799 -15.01551 -14.88305 -14.72832 -14.65210 -14.35977 -14.06478 -13.85002 -13.70482 -13.52392 -13.35992 -13.12941 -12.94544 -12.78220 -12.53443 -12.44787 -12.14499 -12.12940 -12.09521 -11.96363 -11.52074 -11.06710 -10.41840 -10.04332 -9.93739 -9.74111 -9.51481 -9.47475 -8.48132 -5.97451 -0.45624 0.00382 0.68366 0.98085 1.15474 1.39169 1.40915 1.52294 1.76666 2.01490 2.05707 2.28807 2.94421 3.18445 3.45240 3.56826 3.93706 3.96906 4.04992 4.19018 4.26941 4.31174 4.43707 4.46322 4.53556 4.60735 4.71699 4.79553 4.88967 4.95219 4.98052 5.12232 5.38731 5.41226 5.80003 6.02997 6.23152 6.27190 6.57244 7.01531 7.09876 7.52666 8.07687 8.69063 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.001846 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.342067 B =15166.221335 C =15798.771352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.602 5.602 3 C 0.124 3.876 4 C 0.055 3.945 5 N -0.673 5.673 6 C 0.066 3.934 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.572 5.572 10 C -0.336 4.336 11 H 0.080 0.920 12 C -0.014 4.014 13 N -0.920 5.920 14 Si 0.996 3.004 15 H -0.272 1.272 16 H -0.270 1.270 17 H -0.270 1.270 18 C 0.567 3.433 19 O -0.568 6.568 20 C -0.160 4.160 21 C -0.111 4.111 22 C -0.205 4.205 23 S 0.260 5.740 24 C -0.164 4.164 25 Cl -0.016 7.016 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.015 0.985 32 H 0.089 0.911 33 H 0.343 0.657 34 H 0.058 0.942 35 H 0.109 0.891 36 H 0.396 0.604 37 H 0.278 0.722 38 H 0.185 0.815 39 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.912 -26.731 10.660 34.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.334 5.334 3 C 0.000 4.000 4 C -0.075 4.075 5 N -0.305 5.305 6 C -0.067 4.067 7 C 0.225 3.775 8 O -0.508 6.508 9 N -0.209 5.209 10 C -0.465 4.465 11 H 0.098 0.902 12 C -0.214 4.214 13 N -0.561 5.561 14 Si 0.819 3.181 15 H -0.198 1.198 16 H -0.194 1.194 17 H -0.195 1.195 18 C 0.354 3.646 19 O -0.447 6.447 20 C -0.181 4.181 21 C -0.139 4.139 22 C -0.340 4.340 23 S 0.525 5.475 24 C -0.310 4.310 25 Cl 0.013 6.987 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.127 0.873 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.107 0.893 33 H 0.161 0.839 34 H 0.076 0.924 35 H 0.127 0.873 36 H 0.230 0.770 37 H 0.088 0.912 38 H 0.202 0.798 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -18.564 -27.396 10.563 34.738 hybrid contribution 1.798 1.573 -0.528 2.446 sum -16.766 -25.823 10.035 32.382 Atomic orbital electron populations 1.22397 0.76480 1.04929 1.03775 1.47726 1.08833 1.04549 1.72292 1.21300 0.98192 0.84581 0.95896 1.22262 0.98908 0.88486 0.97837 1.60066 1.28180 1.29711 1.12561 1.21526 1.00570 0.93061 0.91508 1.20774 0.84234 0.88578 0.83908 1.90489 1.60641 1.68763 1.30917 1.41924 1.50331 1.21168 1.07483 1.19654 1.33244 0.99371 0.94246 0.90202 1.26092 0.98420 1.02948 0.93943 1.69671 1.47191 1.41312 0.97935 0.84954 0.78339 0.77151 0.77677 1.19758 1.19409 1.19513 1.18023 0.86440 0.84086 0.76057 1.90834 1.15361 1.87719 1.50808 1.20380 0.99169 0.94526 1.03988 1.21437 0.92359 0.98724 1.01332 1.26063 1.06064 0.97657 1.04202 1.83191 1.10252 1.11058 1.43027 1.25602 0.97950 1.02752 1.04695 1.98411 1.32948 1.98227 1.69158 0.89600 0.89252 0.89685 0.87306 0.91704 0.96687 0.89280 0.83868 0.92386 0.87269 0.76975 0.91233 0.79758 0.76630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 9.00 127.77 1.15 1.77 16 2 N -0.60 -11.71 2.87 -851.08 -2.45 -14.16 16 3 C 0.12 2.85 5.68 86.38 0.49 3.34 16 4 C 0.06 1.46 6.01 86.30 0.52 1.97 16 5 N -0.67 -22.70 6.13 -517.94 -3.17 -25.87 16 6 C 0.07 2.41 6.17 85.55 0.53 2.94 16 7 C 0.44 21.67 7.82 87.65 0.69 22.36 16 8 O -0.62 -35.53 15.78 -3.09 -0.05 -35.58 16 9 N -0.57 -30.30 5.29 -306.99 -1.62 -31.93 16 10 C -0.34 -19.51 9.68 84.04 0.81 -18.70 16 11 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 12 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 13 N -0.92 -50.56 13.05 21.66 0.28 -50.28 16 14 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 15 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 16 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 18 C 0.57 14.10 7.25 86.55 0.63 14.73 16 19 O -0.57 -19.36 15.62 -4.21 -0.07 -19.42 16 20 C -0.16 -2.98 5.18 -19.84 -0.10 -3.09 16 21 C -0.11 -1.01 8.12 22.69 0.18 -0.82 16 22 C -0.20 -1.08 11.11 66.65 0.74 -0.34 16 23 S 0.26 2.59 23.02 -56.49 -1.30 1.29 16 24 C -0.16 -3.12 6.85 67.35 0.46 -2.65 16 25 Cl -0.02 -0.39 28.02 -2.72 -0.08 -0.46 16 26 H 0.09 0.40 7.05 -2.39 -0.02 0.39 16 27 H 0.09 0.72 8.03 -2.39 -0.02 0.70 16 28 H 0.08 0.66 6.00 -2.38 -0.01 0.65 16 29 H 0.11 2.12 8.07 -2.39 -0.02 2.10 16 30 H 0.06 1.81 7.36 -2.39 -0.02 1.79 16 31 H 0.01 0.44 8.14 -2.39 -0.02 0.43 16 32 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.34 12.55 8.43 -89.69 -0.76 11.79 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.11 3.51 8.14 -2.38 -0.02 3.49 16 36 H 0.40 19.94 7.90 -92.71 -0.73 19.21 16 37 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 38 H 0.19 0.69 6.07 -2.91 -0.02 0.67 16 39 H 0.22 -0.54 8.06 -2.91 -0.02 -0.57 16 Total: -1.00 -78.70 364.02 -0.22 -78.92 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: -0.36 Total: 30.61 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 6.56 Total: 21.20 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -6.96 Total: -122.24 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -0.11 Total: -55.00 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -1.30 Total: 1.29 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.46 kcal Total: -78.70 -0.22 -78.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493720666.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.449 kcal (2) G-P(sol) polarization free energy of solvation -78.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds