Wall clock time and date at job start Wed Apr 1 2020 03:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1 5 5 N 1.40055 * 125.97582 * 180.14786 * 4 3 2 6 6 C 1.34773 * 119.99870 * 0.29543 * 5 4 3 7 7 O 1.21533 * 120.00121 * 359.97438 * 6 5 4 8 8 C 1.48174 * 120.00133 * 180.02562 * 6 5 4 9 9 C 1.39371 * 119.55333 * 179.73083 * 8 6 5 10 10 C 1.38349 * 119.23615 * 179.72650 * 9 8 6 11 11 C 1.39955 * 118.37303 * 0.52981 * 10 9 8 12 12 C 1.43203 * 120.47740 * 179.71094 * 11 10 9 13 13 N 9.67661 * 170.20201 * 181.13270 * 3 1 2 14 14 C 1.40029 * 119.04974 * 359.72975 * 11 10 9 15 15 Cl 1.73606 * 119.66710 * 179.97438 * 14 11 10 16 16 N 1.31486 * 120.66791 * 359.97438 * 14 11 10 17 17 N 1.31243 * 108.05209 * 0.42173 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46503 * 125.97339 * 359.97438 * 18 2 1 20 20 C 1.50704 * 109.47137 * 90.00057 * 19 18 2 21 21 H 1.07995 * 120.00113 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99953 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00086 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99848 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47238 * 90.00056 * 24 22 20 26 26 H 1.48499 * 109.47084 * 210.00260 * 24 22 20 27 27 H 1.48502 * 109.47152 * 329.99875 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.07999 * 126.06341 * 0.02562 * 3 2 1 32 32 H 0.96998 * 119.99973 * 180.30083 * 5 4 3 33 33 H 1.07995 * 120.38347 * 359.97438 * 9 8 6 34 34 H 1.08007 * 120.81404 * 180.26088 * 10 9 8 35 35 H 1.09000 * 109.47421 * 210.00106 * 19 18 2 36 36 H 1.09003 * 109.47298 * 330.00120 * 19 18 2 37 37 H 0.96998 * 120.00072 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7728 1.4742 0.0076 6 6 4.6360 2.8149 0.0144 7 8 3.5273 3.3127 0.0166 8 6 5.8374 3.6822 0.0182 9 6 5.6852 5.0676 0.0195 10 6 6.8113 5.8711 0.0288 11 6 8.0680 5.2550 0.0251 12 6 9.2634 6.0435 0.0281 13 7 10.2118 6.6690 0.0326 14 6 8.1396 3.8566 0.0180 15 17 9.6901 3.0756 0.0126 16 7 7.0445 3.1290 0.0153 17 7 3.6338 -0.6579 -0.0036 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0129 20 6 1.6945 -2.9552 -1.4362 21 1 1.9110 -2.2835 -2.2537 22 6 1.2759 -4.2432 -1.6946 23 7 1.0117 -5.0610 -0.6991 24 14 1.0826 -4.8262 -3.4587 25 1 2.3630 -5.4128 -3.9293 26 1 0.0129 -5.8540 -3.5260 27 1 0.7181 -3.6751 -4.3233 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9718 2.1210 0.0004 32 1 5.6577 1.0769 0.0054 33 1 4.6994 5.5088 0.0174 34 1 6.7229 6.9476 0.0343 35 1 2.5846 -3.1074 0.4974 36 1 0.8914 -2.5585 0.5008 37 1 0.7169 -5.9671 -0.8809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537418203.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:51 Heat of formation + Delta-G solvation = 90.953223 kcal Electronic energy + Delta-G solvation = -25373.225571 eV Core-core repulsion = 21371.136929 eV Total energy + Delta-G solvation = -4002.088642 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.073 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.47184 -41.86821 -40.30987 -37.99641 -37.85710 -36.46671 -35.36084 -34.24967 -33.10034 -32.77057 -32.49345 -28.79737 -27.86490 -27.16145 -25.06763 -24.93229 -23.22367 -21.28883 -21.14218 -20.58544 -19.03510 -18.74754 -18.57698 -17.57298 -17.00590 -16.89566 -16.73854 -16.25318 -16.04106 -15.75749 -15.53239 -15.11165 -14.78857 -14.55635 -14.50766 -14.30117 -14.24981 -13.78381 -13.62077 -13.59608 -13.55728 -13.15079 -12.98045 -12.82859 -12.68299 -12.60369 -12.24932 -12.11374 -11.70278 -11.45691 -11.36796 -11.30106 -10.97453 -10.72609 -10.38896 -9.59131 -9.15766 -8.31864 -6.49078 -1.22905 -0.26581 0.37082 0.79988 1.19636 1.27377 1.35136 1.38927 1.40491 1.51566 1.75824 2.11355 2.17824 2.33372 2.39834 2.53193 2.81949 2.98215 3.30244 3.49726 3.74184 3.86859 3.92551 4.16959 4.46649 4.51444 4.65127 4.75489 4.82081 4.88201 4.98055 5.00270 5.02942 5.14023 5.26637 5.54954 5.82175 5.89843 5.93697 6.16085 6.24028 6.27156 6.63232 6.80588 7.02785 7.21808 8.74194 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.017646 B = 0.002176 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.344611 B =12866.996892 C =13869.755566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.088 3.912 3 C -0.292 4.292 4 C 0.269 3.731 5 N -0.609 5.609 6 C 0.579 3.421 7 O -0.513 6.513 8 C 0.120 3.880 9 C -0.085 4.085 10 C 0.014 3.986 11 C -0.034 4.034 12 C 0.271 3.729 13 N -0.413 5.413 14 C 0.209 3.791 15 Cl -0.012 7.012 16 N -0.468 5.468 17 N -0.357 5.357 18 N -0.340 5.340 19 C 0.275 3.725 20 C -0.552 4.552 21 H 0.050 0.950 22 C 0.022 3.978 23 N -0.917 5.917 24 Si 0.970 3.030 25 H -0.276 1.276 26 H -0.271 1.271 27 H -0.268 1.268 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.177 0.823 32 H 0.427 0.573 33 H 0.195 0.805 34 H 0.214 0.786 35 H 0.023 0.977 36 H 0.054 0.946 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.844 24.147 2.330 25.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 C -0.323 4.323 4 C 0.015 3.985 5 N -0.257 5.257 6 C 0.364 3.636 7 O -0.387 6.387 8 C -0.018 4.018 9 C -0.106 4.106 10 C -0.013 4.013 11 C -0.041 4.041 12 C -0.045 4.045 13 N -0.088 5.088 14 C 0.038 3.962 15 Cl 0.017 6.983 16 N -0.182 5.182 17 N -0.188 5.188 18 N -0.123 5.123 19 C 0.156 3.844 20 C -0.590 4.590 21 H 0.068 0.932 22 C -0.179 4.179 23 N -0.556 5.556 24 Si 0.794 3.206 25 H -0.202 1.202 26 H -0.196 1.196 27 H -0.193 1.193 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.194 0.806 32 H 0.266 0.734 33 H 0.212 0.788 34 H 0.231 0.769 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.313 23.122 2.389 25.430 hybrid contribution 0.040 -0.335 -0.689 0.767 sum 10.354 22.788 1.701 25.087 Atomic orbital electron populations 1.20522 0.85178 1.04518 1.04196 1.21813 0.96775 0.86355 0.99274 1.21472 0.89289 1.00249 1.21282 1.19243 0.88475 0.89246 1.01513 1.42359 1.07657 1.05101 1.70572 1.18051 0.88388 0.80705 0.76453 1.90752 1.25391 1.74010 1.48502 1.20832 0.88548 0.93134 0.99250 1.22454 1.03074 0.90605 0.94444 1.22235 0.86743 1.03802 0.88518 1.16765 0.90367 0.89212 1.07775 1.24987 0.92459 0.93200 0.93862 1.81335 1.10119 1.09308 1.08064 1.21665 0.88763 0.87964 0.97763 1.98479 1.21735 1.82055 1.96036 1.66827 0.97634 1.41097 1.12617 1.77226 1.00242 1.10165 1.31162 1.48822 1.01659 1.07656 1.54162 1.19260 0.94957 0.72443 0.97773 1.21434 1.47410 0.98373 0.91783 0.93160 1.25724 0.94025 0.95947 1.02172 1.69999 1.45081 1.07417 1.33074 0.85371 0.78181 0.78240 0.78804 1.20191 1.19563 1.19280 0.88802 0.91590 0.87562 0.80600 0.73445 0.78816 0.76950 0.95853 0.92799 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.67 9.89 71.24 0.70 -1.97 16 2 C 0.09 3.53 6.92 41.38 0.29 3.81 16 3 C -0.29 -11.03 9.52 22.11 0.21 -10.82 16 4 C 0.27 10.53 8.10 133.36 1.08 11.61 16 5 N -0.61 -18.35 5.43 -309.85 -1.68 -20.03 16 6 C 0.58 14.28 7.78 86.88 0.68 14.96 16 7 O -0.51 -14.13 13.43 -3.82 -0.05 -14.18 16 8 C 0.12 2.00 6.75 41.92 0.28 2.28 16 9 C -0.09 -0.67 9.61 22.57 0.22 -0.45 16 10 C 0.01 0.05 9.89 22.71 0.22 0.28 16 11 C -0.03 -0.34 5.75 -21.18 -0.12 -0.46 16 12 C 0.27 3.47 14.41 88.33 1.27 4.74 16 13 N -0.41 -7.28 18.54 19.01 0.35 -6.92 16 14 C 0.21 3.15 7.31 85.18 0.62 3.77 16 15 Cl -0.01 -0.20 28.18 -2.72 -0.08 -0.27 16 16 N -0.47 -8.43 9.49 -174.83 -1.66 -10.09 16 17 N -0.36 -16.59 12.59 -54.49 -0.69 -17.28 16 18 N -0.34 -16.10 3.59 -338.43 -1.22 -17.31 16 19 C 0.27 14.31 5.81 85.63 0.50 14.81 16 20 C -0.55 -30.57 9.39 25.60 0.24 -30.32 16 21 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 22 C 0.02 1.21 5.46 84.66 0.46 1.68 16 23 N -0.92 -51.43 13.29 21.45 0.28 -51.15 16 24 Si 0.97 42.73 29.54 68.60 2.03 44.76 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.07 2.29 7.71 -2.39 -0.02 2.27 16 30 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 31 H 0.18 6.00 5.91 -2.91 -0.02 5.99 16 32 H 0.43 11.80 8.14 -92.71 -0.75 11.05 16 33 H 0.19 0.82 7.62 -2.91 -0.02 0.80 16 34 H 0.21 -1.10 8.06 -2.91 -0.02 -1.12 16 35 H 0.02 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 2.76 7.65 -2.39 -0.02 2.75 16 37 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -71.28 357.63 4.36 -66.92 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.41 Total: 11.65 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 6.66 Total: 13.91 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -4.61 Total: -122.79 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.05 Total: -14.18 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.08 Total: -0.27 kcal Total: -71.28 4.36 -66.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537418203.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.877 kcal (2) G-P(sol) polarization free energy of solvation -71.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds