Wall clock time and date at job start Wed Apr 1 2020 04:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47331 * 2 1 4 4 O 1.42898 * 109.47035 * 119.99769 * 2 1 3 5 5 C 1.52993 * 109.47294 * 240.00067 * 2 1 3 6 6 N 1.46507 * 109.47238 * 179.97438 * 5 2 1 7 7 C 1.46494 * 119.99905 * 269.99821 * 6 5 2 8 8 C 1.34777 * 119.99914 * 90.00078 * 6 5 2 9 9 O 1.21571 * 119.99889 * 4.62321 * 8 6 5 10 10 C 1.47694 * 119.99879 * 184.62460 * 8 6 5 11 11 C 1.39658 * 120.16421 * 310.82423 * 10 8 6 12 12 C 1.37855 * 119.87588 * 179.97438 * 11 10 8 13 13 S 1.76201 * 119.89142 * 179.97438 * 12 11 10 14 14 O 1.42099 * 106.39976 * 336.45786 * 13 12 11 15 15 O 1.42102 * 106.40219 * 203.53954 * 13 12 11 16 16 C 1.76198 * 107.21730 * 89.99895 * 13 12 11 17 17 H 1.08003 * 120.00171 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00006 * 179.72515 * 16 13 12 19 19 N 1.31515 * 119.99951 * 0.27762 * 18 16 13 20 20 Si 1.86801 * 120.00092 * 180.27144 * 18 16 13 21 21 H 1.48500 * 109.46972 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46719 * 120.00109 * 20 18 16 23 23 H 1.48497 * 109.47095 * 239.99852 * 20 18 16 24 24 C 1.38470 * 120.21751 * 0.25033 * 12 11 10 25 25 C 1.38200 * 120.33821 * 359.49051 * 24 12 11 26 26 C 1.38326 * 120.11765 * 0.50890 * 25 24 12 27 27 F 1.35099 * 120.10932 * 179.72188 * 26 25 24 28 28 H 1.08998 * 109.47257 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47561 * 300.00100 * 1 2 3 30 30 H 1.09000 * 109.46862 * 60.00074 * 1 2 3 31 31 H 0.96701 * 113.99885 * 60.00430 * 4 2 1 32 32 H 1.09000 * 109.47282 * 60.00115 * 5 2 1 33 33 H 1.09000 * 109.47539 * 299.99626 * 5 2 1 34 34 H 1.09000 * 109.47353 * 272.91268 * 7 6 5 35 35 H 1.09003 * 109.47279 * 32.91778 * 7 6 5 36 36 H 1.09008 * 109.46896 * 152.91143 * 7 6 5 37 37 H 1.07999 * 120.06086 * 359.97438 * 11 10 8 38 38 H 0.96996 * 120.00271 * 180.02562 * 19 18 16 39 39 H 1.07993 * 119.82740 * 179.72488 * 24 12 11 40 40 H 1.08001 * 119.94093 * 180.25621 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2492 6 7 3.5050 -0.7207 -1.2495 7 6 4.2370 0.3782 -1.8841 8 6 4.1794 -1.7312 -0.6659 9 8 3.5749 -2.6840 -0.2136 10 6 5.6527 -1.6808 -0.5758 11 6 6.4151 -1.3816 -1.7070 12 6 7.7899 -1.3356 -1.6161 13 16 8.7522 -0.9587 -3.0432 14 8 7.9519 -1.2972 -4.1676 15 8 10.0424 -1.5084 -2.8139 16 6 8.9573 0.7907 -3.0869 17 1 8.5187 1.4053 -2.3146 18 6 9.6819 1.3747 -4.1041 19 7 10.2155 0.6264 -5.0449 20 14 9.9057 3.2288 -4.1462 21 1 9.2127 3.8376 -2.9825 22 1 11.3535 3.5541 -4.0854 23 1 9.3296 3.7685 -5.4040 24 6 8.4174 -1.5903 -0.4083 25 6 7.6714 -1.8822 0.7179 26 6 6.2911 -1.9320 0.6425 27 9 5.5624 -2.2228 1.7423 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7210 -1.5952 1.2329 32 1 1.6767 -0.2074 -2.1392 33 1 1.6767 -1.7489 -1.2492 34 1 4.3733 0.1601 -2.9434 35 1 3.6712 1.3034 -1.7735 36 1 5.2111 0.4890 -1.4076 37 1 5.9285 -1.1864 -2.6513 38 1 10.7256 1.0372 -5.7603 39 1 9.4949 -1.5570 -0.3453 40 1 8.1673 -2.0757 1.6576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548662740.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:52 Heat of formation + Delta-G solvation = -187.478693 kcal Electronic energy + Delta-G solvation = -28804.785585 eV Core-core repulsion = 24433.145304 eV Total energy + Delta-G solvation = -4371.640282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.93179 -40.36241 -38.48226 -37.37217 -35.45718 -35.31407 -34.13296 -33.23189 -32.03138 -30.98738 -30.60690 -27.61986 -26.34573 -26.28697 -23.64342 -22.95720 -21.95511 -20.18416 -18.79774 -17.86530 -17.46753 -17.09974 -16.75795 -16.60783 -16.22848 -15.68017 -15.64759 -15.50098 -15.13463 -14.98650 -14.25933 -14.09496 -13.93320 -13.81526 -13.62714 -13.14316 -13.06264 -12.74200 -12.72736 -12.54351 -12.43510 -12.19411 -12.03784 -11.81949 -11.43139 -11.32911 -11.32094 -11.20590 -10.67381 -10.48290 -10.44593 -10.34787 -10.12044 -9.77113 -9.38481 -9.07749 -9.03171 -8.81842 -8.69079 -6.84821 -5.49275 0.76024 1.05831 1.92395 2.59038 2.84845 2.97759 3.06960 3.13149 3.46531 3.96330 4.12042 4.19426 4.35431 4.50681 4.53376 4.70015 4.80062 4.86608 5.05838 5.07851 5.12141 5.19864 5.31155 5.33329 5.40321 5.49974 5.55605 5.68209 5.70314 5.74010 5.77453 5.85984 5.93902 6.09643 6.15671 6.32157 6.73627 6.77031 7.17105 7.18272 7.55308 7.79783 8.06418 8.73023 10.10037 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.003747 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.539369 B = 7471.119070 C = 8556.991409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.085 3.915 3 H 0.098 0.902 4 O -0.555 6.555 5 C 0.082 3.918 6 N -0.605 5.605 7 C 0.062 3.938 8 C 0.578 3.422 9 O -0.530 6.530 10 C -0.195 4.195 11 C 0.029 3.971 12 C -0.661 4.661 13 S 2.602 3.398 14 O -0.980 6.980 15 O -0.979 6.979 16 C -1.001 5.001 17 H 0.107 0.893 18 C 0.133 3.867 19 N -0.840 5.840 20 Si 0.924 3.076 21 H -0.261 1.261 22 H -0.270 1.270 23 H -0.270 1.270 24 C 0.023 3.977 25 C -0.184 4.184 26 C 0.183 3.817 27 F -0.122 7.122 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.378 0.622 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.154 0.846 38 H 0.293 0.707 39 H 0.156 0.844 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.357 1.749 7.866 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.024 3.976 3 H 0.115 0.885 4 O -0.361 6.361 5 C -0.041 4.041 6 N -0.338 5.338 7 C -0.080 4.080 8 C 0.367 3.633 9 O -0.406 6.406 10 C -0.199 4.199 11 C 0.010 3.990 12 C -0.741 4.741 13 S 2.782 3.218 14 O -0.977 6.977 15 O -0.976 6.976 16 C -1.134 5.134 17 H 0.125 0.875 18 C -0.086 4.086 19 N -0.469 5.469 20 Si 0.747 3.253 21 H -0.184 1.184 22 H -0.194 1.194 23 H -0.195 1.195 24 C 0.005 3.995 25 C -0.203 4.203 26 C 0.162 3.838 27 F -0.100 7.100 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.226 0.774 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.172 0.828 38 H 0.103 0.897 39 H 0.174 0.826 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.086 1.113 7.576 15.162 hybrid contribution -0.598 0.920 0.557 1.231 sum -13.684 2.033 8.133 16.048 Atomic orbital electron populations 1.22441 0.95901 1.02793 1.02916 1.22316 0.92889 0.97054 0.85318 0.88458 1.86582 1.77299 1.29354 1.42852 1.22281 0.79809 1.03066 0.98941 1.47542 1.06242 1.23182 1.56796 1.22194 0.98096 0.89167 0.98592 1.17917 0.86311 0.82014 0.77100 1.90725 1.69593 1.32886 1.47431 1.19913 0.93938 1.11490 0.94584 1.21095 0.92188 0.88344 0.97356 1.31806 1.07193 1.14138 1.20967 1.01278 0.72320 0.77431 0.70771 1.93352 1.70911 1.86360 1.47058 1.93354 1.38141 1.81316 1.84783 1.30099 1.47196 1.16113 1.20039 0.87468 1.24769 0.90237 1.01553 0.92015 1.69897 1.27902 1.38072 1.10995 0.86076 0.78996 0.81004 0.79238 1.18426 1.19448 1.19462 1.21081 1.01207 0.87619 0.89626 1.21221 0.91316 1.06679 1.01118 1.17744 0.89302 0.94857 0.81869 1.91557 1.77589 1.89776 1.51090 0.92077 0.91530 0.91436 0.77380 0.89289 0.89259 0.91059 0.90758 0.89828 0.82805 0.89656 0.82599 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 9.53 37.16 0.35 -0.92 16 2 C 0.08 0.81 3.86 -26.74 -0.10 0.71 16 3 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 4 O -0.56 -7.01 12.25 -37.54 -0.46 -7.47 16 5 C 0.08 0.83 5.18 -4.04 -0.02 0.80 16 6 N -0.61 -7.90 2.83 -182.75 -0.52 -8.42 16 7 C 0.06 0.72 9.09 59.84 0.54 1.26 16 8 C 0.58 9.45 6.44 -12.40 -0.08 9.37 16 9 O -0.53 -9.60 15.33 3.00 0.05 -9.56 16 10 C -0.19 -3.31 4.90 -104.91 -0.51 -3.82 16 11 C 0.03 0.52 7.08 -39.19 -0.28 0.24 16 12 C -0.66 -12.76 5.81 -39.64 -0.23 -12.99 16 13 S 2.60 63.34 4.65 -107.50 -0.50 62.84 16 14 O -0.98 -26.02 17.15 -57.17 -0.98 -27.00 16 15 O -0.98 -26.17 17.14 -57.17 -0.98 -27.15 16 16 C -1.00 -24.88 9.58 30.60 0.29 -24.59 16 17 H 0.11 2.39 7.81 -52.48 -0.41 1.98 16 18 C 0.13 3.39 5.46 -17.82 -0.10 3.30 16 19 N -0.84 -22.87 13.19 55.43 0.73 -22.14 16 20 Si 0.92 18.84 29.54 -169.99 -5.02 13.82 16 21 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 C 0.02 0.39 9.51 -39.51 -0.38 0.02 16 25 C -0.18 -2.74 10.01 -39.56 -0.40 -3.13 16 26 C 0.18 3.01 7.26 -38.96 -0.28 2.73 16 27 F -0.12 -2.04 16.52 2.25 0.04 -2.01 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.38 4.27 8.60 45.56 0.39 4.66 16 32 H 0.09 0.66 8.07 -51.93 -0.42 0.25 16 33 H 0.09 0.96 7.36 -51.93 -0.38 0.58 16 34 H 0.07 0.78 7.56 -51.93 -0.39 0.39 16 35 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 36 H 0.08 1.07 5.67 -51.92 -0.29 0.77 16 37 H 0.15 2.58 6.12 -52.49 -0.32 2.26 16 38 H 0.29 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.16 2.41 7.60 -52.49 -0.40 2.01 16 40 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 359.47 15.07 5.42 5.42 Total: -1.00 -34.23 359.47 -7.31 -41.54 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -3.90 Total: 7.13 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: -1.19 Total: -27.01 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 0.21 Total: -30.55 kcal Atomic # 8 Polarization: -68.80 SS G_CDS: -2.37 Total: -71.17 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Atomic # 16 Polarization: 63.34 SS G_CDS: -0.50 Total: 62.84 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.23 -7.31 -41.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548662740.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.936 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds