Wall clock time and date at job start Wed Apr 1 2020 04:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47331 * 2 1 4 4 O 1.42898 * 109.47035 * 119.99769 * 2 1 3 5 5 C 1.52993 * 109.47294 * 240.00067 * 2 1 3 6 6 N 1.46507 * 109.47238 * 179.97438 * 5 2 1 7 7 C 1.46494 * 119.99905 * 269.99821 * 6 5 2 8 8 C 1.34777 * 119.99914 * 90.00078 * 6 5 2 9 9 O 1.21571 * 119.99889 * 4.62321 * 8 6 5 10 10 C 1.47694 * 119.99879 * 184.62460 * 8 6 5 11 11 C 1.39658 * 120.16421 * 310.82423 * 10 8 6 12 12 C 1.37855 * 119.87588 * 179.97438 * 11 10 8 13 13 S 1.76201 * 119.89142 * 179.97438 * 12 11 10 14 14 O 1.42099 * 106.39976 * 336.45786 * 13 12 11 15 15 O 1.42102 * 106.40219 * 203.53954 * 13 12 11 16 16 C 1.76198 * 107.21730 * 89.99895 * 13 12 11 17 17 H 1.08003 * 120.00171 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00006 * 179.72515 * 16 13 12 19 19 N 1.31515 * 119.99951 * 0.27762 * 18 16 13 20 20 Si 1.86801 * 120.00092 * 180.27144 * 18 16 13 21 21 H 1.48500 * 109.46972 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46719 * 120.00109 * 20 18 16 23 23 H 1.48497 * 109.47095 * 239.99852 * 20 18 16 24 24 C 1.38470 * 120.21751 * 0.25033 * 12 11 10 25 25 C 1.38200 * 120.33821 * 359.49051 * 24 12 11 26 26 C 1.38326 * 120.11765 * 0.50890 * 25 24 12 27 27 F 1.35099 * 120.10932 * 179.72188 * 26 25 24 28 28 H 1.08998 * 109.47257 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47561 * 300.00100 * 1 2 3 30 30 H 1.09000 * 109.46862 * 60.00074 * 1 2 3 31 31 H 0.96701 * 113.99885 * 60.00430 * 4 2 1 32 32 H 1.09000 * 109.47282 * 60.00115 * 5 2 1 33 33 H 1.09000 * 109.47539 * 299.99626 * 5 2 1 34 34 H 1.09000 * 109.47353 * 272.91268 * 7 6 5 35 35 H 1.09003 * 109.47279 * 32.91778 * 7 6 5 36 36 H 1.09008 * 109.46896 * 152.91143 * 7 6 5 37 37 H 1.07999 * 120.06086 * 359.97438 * 11 10 8 38 38 H 0.96996 * 120.00271 * 180.02562 * 19 18 16 39 39 H 1.07993 * 119.82740 * 179.72488 * 24 12 11 40 40 H 1.08001 * 119.94093 * 180.25621 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2492 6 7 3.5050 -0.7207 -1.2495 7 6 4.2370 0.3782 -1.8841 8 6 4.1794 -1.7312 -0.6659 9 8 3.5749 -2.6840 -0.2136 10 6 5.6527 -1.6808 -0.5758 11 6 6.4151 -1.3816 -1.7070 12 6 7.7899 -1.3356 -1.6161 13 16 8.7522 -0.9587 -3.0432 14 8 7.9519 -1.2972 -4.1676 15 8 10.0424 -1.5084 -2.8139 16 6 8.9573 0.7907 -3.0869 17 1 8.5187 1.4053 -2.3146 18 6 9.6819 1.3747 -4.1041 19 7 10.2155 0.6264 -5.0449 20 14 9.9057 3.2288 -4.1462 21 1 9.2127 3.8376 -2.9825 22 1 11.3535 3.5541 -4.0854 23 1 9.3296 3.7685 -5.4040 24 6 8.4174 -1.5903 -0.4083 25 6 7.6714 -1.8822 0.7179 26 6 6.2911 -1.9320 0.6425 27 9 5.5624 -2.2228 1.7423 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7210 -1.5952 1.2329 32 1 1.6767 -0.2074 -2.1392 33 1 1.6767 -1.7489 -1.2492 34 1 4.3733 0.1601 -2.9434 35 1 3.6712 1.3034 -1.7735 36 1 5.2111 0.4890 -1.4076 37 1 5.9285 -1.1864 -2.6513 38 1 10.7256 1.0372 -5.7603 39 1 9.4949 -1.5570 -0.3453 40 1 8.1673 -2.0757 1.6576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548662740.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:51 Heat of formation + Delta-G solvation = -214.308513 kcal Electronic energy + Delta-G solvation = -28805.949014 eV Core-core repulsion = 24433.145304 eV Total energy + Delta-G solvation = -4372.803710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -50.25560 -41.54070 -39.70853 -38.37046 -37.41592 -36.41501 -36.12884 -35.15522 -33.11971 -32.03362 -31.92454 -28.46515 -28.23952 -27.36882 -24.82501 -24.33939 -22.82363 -21.44699 -20.57657 -19.22610 -18.88293 -18.43604 -18.14038 -17.86930 -17.67813 -17.00229 -16.84460 -16.67230 -16.40929 -16.12073 -15.82649 -15.78653 -15.37721 -14.82505 -14.76829 -14.46666 -14.38902 -14.03367 -13.92864 -13.77928 -13.39453 -13.23113 -13.21146 -12.98114 -12.96243 -12.75993 -12.63884 -12.47309 -12.35536 -12.21604 -11.95842 -11.71178 -11.35833 -11.22479 -11.12479 -10.85454 -10.34703 -10.30750 -9.70301 -8.73679 -7.47548 -0.62343 -0.27637 0.09076 1.36396 1.39888 1.42173 1.59223 1.76985 2.12922 2.27042 2.61821 2.80832 3.11658 3.37304 3.43108 3.51374 3.76692 3.77845 3.80000 3.93985 4.06744 4.09428 4.17966 4.28786 4.42937 4.47845 4.55411 4.61395 4.64335 4.71658 4.79273 4.84545 4.86116 5.00933 5.09758 5.23003 5.30051 5.38373 5.45898 5.91900 6.07872 6.72842 6.79910 6.88249 8.23985 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.003747 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.539369 B = 7471.119070 C = 8556.991409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.083 3.917 3 H 0.100 0.900 4 O -0.579 6.579 5 C 0.077 3.923 6 N -0.598 5.598 7 C 0.053 3.947 8 C 0.569 3.431 9 O -0.556 6.556 10 C -0.198 4.198 11 C 0.029 3.971 12 C -0.667 4.667 13 S 2.597 3.403 14 O -1.017 7.017 15 O -1.016 7.016 16 C -1.014 5.014 17 H 0.129 0.871 18 C 0.074 3.926 19 N -0.889 5.889 20 Si 0.990 3.010 21 H -0.243 1.243 22 H -0.263 1.263 23 H -0.259 1.259 24 C 0.019 3.981 25 C -0.162 4.162 26 C 0.178 3.822 27 F -0.122 7.122 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.380 0.620 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.156 0.844 38 H 0.300 0.700 39 H 0.168 0.832 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.622 3.688 9.130 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.024 3.976 3 H 0.118 0.882 4 O -0.386 6.386 5 C -0.044 4.044 6 N -0.329 5.329 7 C -0.089 4.089 8 C 0.357 3.643 9 O -0.435 6.435 10 C -0.203 4.203 11 C 0.010 3.990 12 C -0.753 4.753 13 S 2.784 3.216 14 O -1.014 7.014 15 O -1.013 7.013 16 C -1.148 5.148 17 H 0.147 0.853 18 C -0.139 4.139 19 N -0.520 5.520 20 Si 0.808 3.192 21 H -0.165 1.165 22 H -0.187 1.187 23 H -0.184 1.184 24 C 0.000 4.000 25 C -0.182 4.182 26 C 0.158 3.842 27 F -0.100 7.100 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.229 0.771 32 H 0.139 0.861 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.088 0.912 37 H 0.174 0.826 38 H 0.110 0.890 39 H 0.186 0.814 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -14.343 3.073 8.785 17.098 hybrid contribution -0.297 0.268 0.244 0.469 sum -14.640 3.341 9.029 17.522 Atomic orbital electron populations 1.22357 0.93717 1.03275 1.03826 1.22451 0.94574 0.96604 0.84000 0.88181 1.86547 1.78013 1.29714 1.44338 1.22550 0.77899 1.03263 1.00724 1.47664 1.07567 1.22407 1.55283 1.22372 0.98009 0.90033 0.98449 1.17955 0.86099 0.82614 0.77639 1.90706 1.69830 1.33996 1.49002 1.20059 0.94658 1.11055 0.94516 1.21053 0.91574 0.88517 0.97868 1.30997 1.07256 1.17192 1.19869 1.00777 0.71910 0.77447 0.71452 1.93297 1.71341 1.86775 1.49977 1.93300 1.40383 1.81862 1.85761 1.30446 1.47120 1.16609 1.20643 0.85344 1.25989 0.89533 1.07056 0.91359 1.69994 1.29272 1.40574 1.12201 0.85093 0.79471 0.74383 0.80234 1.16545 1.18702 1.18372 1.21283 1.02012 0.87426 0.89264 1.21520 0.90460 1.04275 1.01896 1.17982 0.90002 0.94534 0.81694 1.91560 1.77746 1.89715 1.50990 0.91846 0.91659 0.89434 0.77143 0.86095 0.90093 0.90675 0.87496 0.91204 0.82635 0.88970 0.81438 0.79458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.53 71.98 0.69 -1.32 16 2 C 0.08 1.43 3.86 30.59 0.12 1.55 16 3 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 4 O -0.58 -14.10 12.25 -146.78 -1.80 -15.90 16 5 C 0.08 1.41 5.18 86.38 0.45 1.85 16 6 N -0.60 -14.79 2.83 -850.36 -2.40 -17.20 16 7 C 0.05 1.14 9.09 127.77 1.16 2.30 16 8 C 0.57 18.25 6.44 86.74 0.56 18.81 16 9 O -0.56 -20.04 15.33 -1.73 -0.03 -20.06 16 10 C -0.20 -6.58 4.90 -20.05 -0.10 -6.68 16 11 C 0.03 1.03 7.08 22.52 0.16 1.19 16 12 C -0.67 -25.75 5.81 22.23 0.13 -25.62 16 13 S 2.60 129.73 4.65 -56.49 -0.26 129.47 16 14 O -1.02 -56.11 17.15 -128.00 -2.20 -58.31 16 15 O -1.02 -56.12 17.14 -128.00 -2.19 -58.31 16 16 C -1.01 -50.57 9.58 67.73 0.65 -49.92 16 17 H 0.13 5.61 7.81 -2.91 -0.02 5.58 16 18 C 0.07 3.78 5.46 84.65 0.46 4.24 16 19 N -0.89 -49.52 13.19 21.45 0.28 -49.24 16 20 Si 0.99 37.54 29.54 68.60 2.03 39.56 16 21 H -0.24 -8.41 7.11 99.48 0.71 -7.70 16 22 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 23 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 24 C 0.02 0.61 9.51 22.32 0.21 0.82 16 25 C -0.16 -4.43 10.01 22.28 0.22 -4.21 16 26 C 0.18 5.58 7.26 22.67 0.16 5.75 16 27 F -0.12 -3.89 16.52 44.97 0.74 -3.15 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.38 8.50 8.60 -74.06 -0.64 7.86 16 32 H 0.12 1.42 8.07 -2.39 -0.02 1.40 16 33 H 0.08 1.64 7.36 -2.39 -0.02 1.63 16 34 H 0.07 1.56 7.56 -2.39 -0.02 1.54 16 35 H 0.11 1.57 8.09 -2.39 -0.02 1.55 16 36 H 0.07 1.71 5.67 -2.38 -0.01 1.70 16 37 H 0.16 5.32 6.12 -2.91 -0.02 5.30 16 38 H 0.30 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.17 5.00 7.60 -2.91 -0.02 4.98 16 40 H 0.19 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -76.06 359.47 -0.49 -76.55 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.46 Total: 27.82 kcal Atomic # 6 Polarization: -56.11 SS G_CDS: 4.87 Total: -51.24 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: -2.12 Total: -66.44 kcal Atomic # 8 Polarization: -146.37 SS G_CDS: -6.21 Total: -152.58 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.74 Total: -3.15 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.56 kcal Atomic # 16 Polarization: 129.73 SS G_CDS: -0.26 Total: 129.47 kcal Total: -76.06 -0.49 -76.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548662740.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.757 kcal (2) G-P(sol) polarization free energy of solvation -76.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds