Wall clock time and date at job start Wed Apr 1 2020 04:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47376 * 2 1 4 4 O 1.42901 * 109.46829 * 240.00254 * 2 1 3 5 5 C 1.52998 * 109.47091 * 120.00170 * 2 1 3 6 6 N 1.46502 * 109.46986 * 184.99498 * 5 2 1 7 7 C 1.46501 * 120.00035 * 269.99908 * 6 5 2 8 8 C 1.34775 * 119.99706 * 90.00252 * 6 5 2 9 9 O 1.21573 * 120.00308 * 4.42316 * 8 6 5 10 10 C 1.47695 * 119.99785 * 184.42205 * 8 6 5 11 11 C 1.39649 * 120.16961 * 311.11608 * 10 8 6 12 12 C 1.37861 * 119.88028 * 180.02562 * 11 10 8 13 13 S 1.76205 * 119.88989 * 180.02562 * 12 11 10 14 14 O 1.42108 * 106.39919 * 203.53741 * 13 12 11 15 15 O 1.42098 * 106.40104 * 336.45860 * 13 12 11 16 16 C 1.76195 * 107.21800 * 90.00091 * 13 12 11 17 17 H 1.07999 * 120.00053 * 359.97438 * 16 13 12 18 18 C 1.37879 * 120.00061 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99687 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00348 * 180.02562 * 18 16 13 21 21 H 1.48504 * 109.47250 * 89.99303 * 20 18 16 22 22 H 1.48499 * 109.47202 * 209.99851 * 20 18 16 23 23 H 1.48504 * 109.46921 * 329.99653 * 20 18 16 24 24 C 1.38456 * 120.21846 * 359.97438 * 12 11 10 25 25 C 1.38213 * 120.33792 * 0.04080 * 24 12 11 26 26 C 1.38317 * 120.11541 * 359.95963 * 25 24 12 27 27 F 1.35100 * 120.10324 * 180.30025 * 26 25 24 28 28 H 1.09006 * 109.46501 * 300.00327 * 1 2 3 29 29 H 1.09006 * 109.47142 * 59.99429 * 1 2 3 30 30 H 1.08991 * 109.47427 * 180.02562 * 1 2 3 31 31 H 0.96701 * 114.00048 * 299.99801 * 4 2 1 32 32 H 1.09004 * 109.47104 * 65.00187 * 5 2 1 33 33 H 1.08997 * 109.47550 * 304.99592 * 5 2 1 34 34 H 1.08996 * 109.47226 * 272.86384 * 7 6 5 35 35 H 1.08998 * 109.47347 * 32.87098 * 7 6 5 36 36 H 1.09004 * 109.46496 * 152.86949 * 7 6 5 37 37 H 1.07998 * 120.06403 * 0.02562 * 11 10 8 38 38 H 0.97004 * 120.00134 * 180.02562 * 19 18 16 39 39 H 1.07993 * 119.83050 * 180.02562 * 24 12 11 40 40 H 1.07995 * 119.94018 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0062 -0.6736 -1.1668 5 6 2.0399 -0.7213 1.2492 6 7 3.5000 -0.6180 1.3108 7 6 4.3342 -1.6425 0.6778 8 6 4.0757 0.4195 1.9500 9 8 3.3864 1.2259 2.5438 10 6 5.5441 0.5768 1.9290 11 6 6.3705 -0.5069 2.2339 12 6 7.7404 -0.3532 2.2130 13 16 8.7833 -1.7206 2.5970 14 8 10.0201 -1.1722 3.0317 15 8 8.0057 -2.6084 3.3884 16 6 9.1163 -2.5630 1.0858 17 1 8.6933 -2.2001 0.1607 18 6 9.9162 -3.6861 1.0843 19 7 10.4309 -4.1282 2.2109 20 14 10.2699 -4.5788 -0.5179 21 1 11.4923 -4.0112 -1.1415 22 1 10.4790 -6.0233 -0.2441 23 1 9.1196 -4.4116 -1.4421 24 6 8.2994 0.8717 1.8904 25 6 7.4900 1.9504 1.5875 26 6 6.1139 1.8118 1.6041 27 9 5.3231 2.8647 1.3021 28 1 -0.3632 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.7209 -1.5952 -1.2330 32 1 1.7516 -1.7716 1.2055 33 1 1.6054 -0.2618 2.1370 34 1 4.5001 -2.4603 1.3790 35 1 3.8309 -2.0226 -0.2112 36 1 5.2924 -1.2067 0.3945 37 1 5.9373 -1.4636 2.4855 38 1 10.9939 -4.9181 2.2099 39 1 9.3732 0.9849 1.8755 40 1 7.9329 2.9030 1.3371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548662741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:56 Heat of formation + Delta-G solvation = -187.789960 kcal Electronic energy + Delta-G solvation = -28694.791689 eV Core-core repulsion = 24323.137910 eV Total energy + Delta-G solvation = -4371.653779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.99492 -40.39805 -38.52172 -37.60815 -35.44787 -35.25289 -34.13688 -33.23008 -32.15657 -31.03812 -30.63413 -27.57854 -26.35843 -26.28462 -23.63010 -22.99073 -22.10309 -20.22154 -18.80044 -17.88117 -17.50345 -17.09323 -16.73246 -16.69459 -16.20592 -15.94592 -15.68771 -15.43640 -15.24515 -14.98627 -14.25663 -14.10028 -13.98358 -13.86454 -13.62137 -13.14904 -13.06814 -12.83541 -12.74827 -12.62317 -12.36272 -12.20062 -12.04585 -11.79799 -11.45578 -11.34674 -11.29736 -11.25162 -10.68839 -10.67220 -10.44923 -10.35362 -10.14540 -9.79529 -9.37058 -9.09661 -9.05721 -8.83571 -8.69807 -6.84517 -5.49232 0.72859 1.03843 1.91565 2.53827 2.81396 2.99653 3.07248 3.12518 3.43593 3.96587 4.07600 4.09653 4.26646 4.50243 4.53452 4.68096 4.77302 4.82256 5.06983 5.08927 5.12753 5.19008 5.30010 5.35322 5.41852 5.50952 5.58025 5.67837 5.71214 5.73477 5.81017 5.82359 5.91593 6.07720 6.13537 6.32272 6.72364 6.75051 7.14205 7.17270 7.37407 7.79538 8.00182 8.73102 10.10312 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.003856 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.041146 B = 7259.237342 C = 8508.571516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.085 3.915 3 H 0.101 0.899 4 O -0.557 6.557 5 C 0.084 3.916 6 N -0.603 5.603 7 C 0.064 3.936 8 C 0.569 3.431 9 O -0.531 6.531 10 C -0.194 4.194 11 C 0.031 3.969 12 C -0.660 4.660 13 S 2.602 3.398 14 O -0.979 6.979 15 O -0.979 6.979 16 C -1.001 5.001 17 H 0.107 0.893 18 C 0.133 3.867 19 N -0.840 5.840 20 Si 0.924 3.076 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.261 1.261 24 C 0.024 3.976 25 C -0.183 4.183 26 C 0.180 3.820 27 F -0.125 7.125 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.371 0.629 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.155 0.845 38 H 0.293 0.707 39 H 0.157 0.843 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.454 4.677 -6.070 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.025 3.975 3 H 0.119 0.881 4 O -0.363 6.363 5 C -0.039 4.039 6 N -0.335 5.335 7 C -0.078 4.078 8 C 0.357 3.643 9 O -0.408 6.408 10 C -0.199 4.199 11 C 0.012 3.988 12 C -0.740 4.740 13 S 2.782 3.218 14 O -0.976 6.976 15 O -0.976 6.976 16 C -1.135 5.135 17 H 0.125 0.875 18 C -0.086 4.086 19 N -0.469 5.469 20 Si 0.747 3.253 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.185 1.185 24 C 0.005 3.995 25 C -0.202 4.202 26 C 0.160 3.840 27 F -0.103 7.103 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.218 0.782 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.173 0.827 38 H 0.104 0.896 39 H 0.175 0.825 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.256 5.473 -4.922 15.162 hybrid contribution -0.533 -0.499 -1.415 1.593 sum -13.788 4.974 -6.337 15.969 Atomic orbital electron populations 1.22425 0.95685 1.02653 1.03209 1.22381 0.93081 0.97476 0.84536 0.88117 1.86663 1.77079 1.28777 1.43741 1.22255 0.80114 1.01645 0.99898 1.47582 1.06522 1.24843 1.54515 1.22211 0.96191 0.91017 0.98393 1.18070 0.86970 0.80881 0.78374 1.90778 1.64176 1.42791 1.43017 1.19890 0.93902 0.94559 1.11545 1.21099 0.91596 0.97540 0.88567 1.31827 1.08837 1.18961 1.14391 1.01287 0.72149 0.71630 0.76743 1.93356 1.41629 1.79643 1.82946 1.93353 1.71857 1.61947 1.70483 1.30066 1.44227 1.24503 1.14686 0.87491 1.24767 0.90745 0.94461 0.98587 1.69892 1.26981 1.23027 1.26981 0.86102 0.79766 0.78370 0.81049 1.19022 1.19847 1.18452 1.21089 1.01208 0.89761 0.87414 1.21215 0.90923 1.01505 1.06549 1.17747 0.88532 0.82515 0.95223 1.91544 1.74118 1.54942 1.89686 0.91224 0.91493 0.92102 0.78183 0.89735 0.88628 0.91341 0.90187 0.89945 0.82735 0.89603 0.82549 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 9.53 37.16 0.35 -0.93 16 2 C 0.09 0.83 3.83 -26.73 -0.10 0.72 16 3 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 4 O -0.56 -5.46 12.12 -35.23 -0.43 -5.89 16 5 C 0.08 0.85 5.11 -4.04 -0.02 0.83 16 6 N -0.60 -7.94 2.84 -182.75 -0.52 -8.46 16 7 C 0.06 0.76 8.93 59.85 0.53 1.30 16 8 C 0.57 9.41 7.01 -12.40 -0.09 9.33 16 9 O -0.53 -9.98 16.20 5.30 0.09 -9.89 16 10 C -0.19 -3.30 4.91 -104.91 -0.51 -3.82 16 11 C 0.03 0.55 7.08 -39.19 -0.28 0.27 16 12 C -0.66 -12.72 5.81 -39.64 -0.23 -12.95 16 13 S 2.60 63.28 4.65 -107.50 -0.50 62.78 16 14 O -0.98 -26.13 17.15 -57.17 -0.98 -27.11 16 15 O -0.98 -25.98 17.15 -57.17 -0.98 -26.96 16 16 C -1.00 -24.89 9.58 30.60 0.29 -24.60 16 17 H 0.11 2.38 7.81 -52.49 -0.41 1.97 16 18 C 0.13 3.40 5.46 -17.82 -0.10 3.30 16 19 N -0.84 -22.87 13.19 55.43 0.73 -22.14 16 20 Si 0.92 18.86 29.54 -169.99 -5.02 13.84 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 23 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 24 C 0.02 0.40 9.51 -39.51 -0.38 0.02 16 25 C -0.18 -2.69 10.01 -39.56 -0.40 -3.09 16 26 C 0.18 2.95 7.26 -38.96 -0.28 2.67 16 27 F -0.12 -2.06 16.51 2.25 0.04 -2.03 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.37 2.13 9.04 45.56 0.41 2.55 16 32 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 33 H 0.10 1.05 7.36 -51.93 -0.38 0.66 16 34 H 0.07 0.77 7.54 -51.93 -0.39 0.38 16 35 H 0.08 0.75 7.07 -51.93 -0.37 0.39 16 36 H 0.08 1.08 5.68 -51.93 -0.29 0.79 16 37 H 0.16 2.60 6.09 -52.49 -0.32 2.28 16 38 H 0.29 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.16 2.40 7.60 -52.49 -0.40 2.00 16 40 H 0.15 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -34.62 359.91 -7.17 -41.79 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -3.82 Total: 5.59 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: -1.20 Total: -26.94 kcal Atomic # 7 Polarization: -30.82 SS G_CDS: 0.21 Total: -30.60 kcal Atomic # 8 Polarization: -67.55 SS G_CDS: -2.30 Total: -69.85 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.84 kcal Atomic # 16 Polarization: 63.28 SS G_CDS: -0.50 Total: 62.78 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.62 -7.17 -41.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548662741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.000 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds