Wall clock time and date at job start Wed Apr 1 2020 04:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47376 * 2 1 4 4 O 1.42901 * 109.46829 * 240.00254 * 2 1 3 5 5 C 1.52998 * 109.47091 * 120.00170 * 2 1 3 6 6 N 1.46502 * 109.46986 * 184.99498 * 5 2 1 7 7 C 1.46501 * 120.00035 * 269.99908 * 6 5 2 8 8 C 1.34775 * 119.99706 * 90.00252 * 6 5 2 9 9 O 1.21573 * 120.00308 * 4.42316 * 8 6 5 10 10 C 1.47695 * 119.99785 * 184.42205 * 8 6 5 11 11 C 1.39649 * 120.16961 * 311.11608 * 10 8 6 12 12 C 1.37861 * 119.88028 * 180.02562 * 11 10 8 13 13 S 1.76205 * 119.88989 * 180.02562 * 12 11 10 14 14 O 1.42108 * 106.39919 * 203.53741 * 13 12 11 15 15 O 1.42098 * 106.40104 * 336.45860 * 13 12 11 16 16 C 1.76195 * 107.21800 * 90.00091 * 13 12 11 17 17 H 1.07999 * 120.00053 * 359.97438 * 16 13 12 18 18 C 1.37879 * 120.00061 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99687 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00348 * 180.02562 * 18 16 13 21 21 H 1.48504 * 109.47250 * 89.99303 * 20 18 16 22 22 H 1.48499 * 109.47202 * 209.99851 * 20 18 16 23 23 H 1.48504 * 109.46921 * 329.99653 * 20 18 16 24 24 C 1.38456 * 120.21846 * 359.97438 * 12 11 10 25 25 C 1.38213 * 120.33792 * 0.04080 * 24 12 11 26 26 C 1.38317 * 120.11541 * 359.95963 * 25 24 12 27 27 F 1.35100 * 120.10324 * 180.30025 * 26 25 24 28 28 H 1.09006 * 109.46501 * 300.00327 * 1 2 3 29 29 H 1.09006 * 109.47142 * 59.99429 * 1 2 3 30 30 H 1.08991 * 109.47427 * 180.02562 * 1 2 3 31 31 H 0.96701 * 114.00048 * 299.99801 * 4 2 1 32 32 H 1.09004 * 109.47104 * 65.00187 * 5 2 1 33 33 H 1.08997 * 109.47550 * 304.99592 * 5 2 1 34 34 H 1.08996 * 109.47226 * 272.86384 * 7 6 5 35 35 H 1.08998 * 109.47347 * 32.87098 * 7 6 5 36 36 H 1.09004 * 109.46496 * 152.86949 * 7 6 5 37 37 H 1.07998 * 120.06403 * 0.02562 * 11 10 8 38 38 H 0.97004 * 120.00134 * 180.02562 * 19 18 16 39 39 H 1.07993 * 119.83050 * 180.02562 * 24 12 11 40 40 H 1.07995 * 119.94018 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0062 -0.6736 -1.1668 5 6 2.0399 -0.7213 1.2492 6 7 3.5000 -0.6180 1.3108 7 6 4.3342 -1.6425 0.6778 8 6 4.0757 0.4195 1.9500 9 8 3.3864 1.2259 2.5438 10 6 5.5441 0.5768 1.9290 11 6 6.3705 -0.5069 2.2339 12 6 7.7404 -0.3532 2.2130 13 16 8.7833 -1.7206 2.5970 14 8 10.0201 -1.1722 3.0317 15 8 8.0057 -2.6084 3.3884 16 6 9.1163 -2.5630 1.0858 17 1 8.6933 -2.2001 0.1607 18 6 9.9162 -3.6861 1.0843 19 7 10.4309 -4.1282 2.2109 20 14 10.2699 -4.5788 -0.5179 21 1 11.4923 -4.0112 -1.1415 22 1 10.4790 -6.0233 -0.2441 23 1 9.1196 -4.4116 -1.4421 24 6 8.2994 0.8717 1.8904 25 6 7.4900 1.9504 1.5875 26 6 6.1139 1.8118 1.6041 27 9 5.3231 2.8647 1.3021 28 1 -0.3632 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.7209 -1.5952 -1.2330 32 1 1.7516 -1.7716 1.2055 33 1 1.6054 -0.2618 2.1370 34 1 4.5001 -2.4603 1.3790 35 1 3.8309 -2.0226 -0.2112 36 1 5.2924 -1.2067 0.3945 37 1 5.9373 -1.4636 2.4855 38 1 10.9939 -4.9181 2.2099 39 1 9.3732 0.9849 1.8755 40 1 7.9329 2.9030 1.3371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548662741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:55 Heat of formation + Delta-G solvation = -215.307457 kcal Electronic energy + Delta-G solvation = -28695.984937 eV Core-core repulsion = 24323.137910 eV Total energy + Delta-G solvation = -4372.847027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -50.31237 -41.59740 -39.72953 -38.57539 -37.41844 -36.34327 -36.13050 -35.15277 -33.19127 -32.06764 -31.97554 -28.43225 -28.23593 -27.42134 -24.82448 -24.36712 -22.94541 -21.49929 -20.58597 -19.23994 -18.91990 -18.44076 -18.15921 -17.88492 -17.66001 -17.04378 -16.85205 -16.82093 -16.37064 -16.25999 -15.82698 -15.79513 -15.37439 -14.92846 -14.77305 -14.51245 -14.38467 -14.01499 -13.93504 -13.77764 -13.51464 -13.25935 -13.22206 -12.95958 -12.89817 -12.79110 -12.63735 -12.47289 -12.36102 -12.23452 -11.99663 -11.73633 -11.47899 -11.20411 -11.17255 -10.87125 -10.37389 -10.33374 -9.72102 -8.73345 -7.47447 -0.65333 -0.29767 0.08435 1.27908 1.41612 1.42638 1.58412 1.72822 2.09269 2.27087 2.62237 2.76905 3.08232 3.36758 3.42754 3.43523 3.74331 3.76248 3.78635 3.93149 3.97554 4.11729 4.15341 4.24073 4.43965 4.48248 4.56326 4.58891 4.63283 4.70192 4.77165 4.82253 4.89788 4.99951 5.07472 5.18204 5.30074 5.37549 5.43495 5.91779 6.02052 6.78835 6.80071 6.86275 8.24065 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.003856 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.041146 B = 7259.237342 C = 8508.571516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.093 3.907 3 H 0.067 0.933 4 O -0.573 6.573 5 C 0.079 3.921 6 N -0.594 5.594 7 C 0.057 3.943 8 C 0.560 3.440 9 O -0.563 6.563 10 C -0.198 4.198 11 C 0.031 3.969 12 C -0.667 4.667 13 S 2.598 3.402 14 O -1.015 7.015 15 O -1.016 7.016 16 C -1.015 5.015 17 H 0.129 0.871 18 C 0.075 3.925 19 N -0.889 5.889 20 Si 0.989 3.011 21 H -0.256 1.256 22 H -0.265 1.265 23 H -0.242 1.242 24 C 0.020 3.980 25 C -0.160 4.160 26 C 0.176 3.824 27 F -0.124 7.124 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.390 0.610 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.068 0.932 37 H 0.157 0.843 38 H 0.300 0.700 39 H 0.169 0.831 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.611 4.641 -8.437 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.033 3.967 3 H 0.085 0.915 4 O -0.381 6.381 5 C -0.043 4.043 6 N -0.325 5.325 7 C -0.085 4.085 8 C 0.348 3.652 9 O -0.443 6.443 10 C -0.203 4.203 11 C 0.012 3.988 12 C -0.752 4.752 13 S 2.784 3.216 14 O -1.013 7.013 15 O -1.013 7.013 16 C -1.149 5.149 17 H 0.147 0.853 18 C -0.139 4.139 19 N -0.520 5.520 20 Si 0.807 3.193 21 H -0.180 1.180 22 H -0.190 1.190 23 H -0.165 1.165 24 C 0.001 3.999 25 C -0.179 4.179 26 C 0.156 3.844 27 F -0.102 7.102 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.240 0.760 32 H 0.138 0.862 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.087 0.913 37 H 0.174 0.826 38 H 0.110 0.890 39 H 0.187 0.813 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -14.403 5.368 -7.285 17.010 hybrid contribution -0.266 -0.406 -0.696 0.848 sum -14.669 4.961 -7.981 17.421 Atomic orbital electron populations 1.22347 0.93455 1.04193 1.03150 1.22171 0.94629 0.95705 0.84229 0.91462 1.86621 1.77516 1.30414 1.43527 1.22541 0.78088 1.03875 0.99824 1.47715 1.08026 1.23748 1.52981 1.22376 0.95867 0.90586 0.99627 1.18131 0.86716 0.81568 0.78774 1.90755 1.64569 1.44202 1.44734 1.20012 0.94383 0.94647 1.11278 1.21051 0.91032 0.98060 0.88687 1.31019 1.08578 1.18167 1.17483 1.00778 0.71882 0.72169 0.76738 1.93302 1.43856 1.80379 1.83725 1.93297 1.72323 1.64005 1.71707 1.30422 1.44184 1.24746 1.15544 0.85340 1.25982 0.90203 0.95344 1.02359 1.69992 1.28303 1.24125 1.29608 0.85133 0.80422 0.77302 0.76430 1.18048 1.18954 1.16509 1.21301 1.02166 0.89288 0.87106 1.21522 0.89852 1.02374 1.04193 1.17988 0.89261 0.82291 0.94876 1.91549 1.74281 1.54805 1.89600 0.91232 0.91613 0.89750 0.75978 0.86168 0.89582 0.90773 0.87300 0.91345 0.82567 0.88963 0.81326 0.79321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 9.53 71.98 0.69 -1.40 16 2 C 0.09 1.66 3.83 30.59 0.12 1.78 16 3 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 4 O -0.57 -9.88 12.12 -148.98 -1.81 -11.69 16 5 C 0.08 1.46 5.11 86.38 0.44 1.90 16 6 N -0.59 -15.01 2.84 -850.36 -2.41 -17.42 16 7 C 0.06 1.26 8.93 127.77 1.14 2.40 16 8 C 0.56 18.38 7.01 86.74 0.61 18.99 16 9 O -0.56 -21.28 16.20 -3.94 -0.06 -21.35 16 10 C -0.20 -6.63 4.91 -20.05 -0.10 -6.73 16 11 C 0.03 1.09 7.08 22.52 0.16 1.25 16 12 C -0.67 -25.68 5.81 22.23 0.13 -25.55 16 13 S 2.60 129.53 4.65 -56.49 -0.26 129.26 16 14 O -1.02 -55.97 17.15 -128.00 -2.20 -58.16 16 15 O -1.02 -55.98 17.15 -128.00 -2.20 -58.18 16 16 C -1.02 -50.58 9.58 67.73 0.65 -49.93 16 17 H 0.13 5.60 7.81 -2.91 -0.02 5.57 16 18 C 0.07 3.81 5.46 84.65 0.46 4.27 16 19 N -0.89 -49.50 13.19 21.45 0.28 -49.21 16 20 Si 0.99 37.51 29.54 68.60 2.03 39.54 16 21 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 22 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 23 H -0.24 -8.38 7.11 99.48 0.71 -7.67 16 24 C 0.02 0.65 9.51 22.32 0.21 0.86 16 25 C -0.16 -4.34 10.01 22.28 0.22 -4.11 16 26 C 0.18 5.51 7.26 22.67 0.16 5.67 16 27 F -0.12 -3.93 16.51 44.97 0.74 -3.19 16 28 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.39 3.18 9.04 -74.06 -0.67 2.51 16 32 H 0.12 1.36 8.07 -2.38 -0.02 1.34 16 33 H 0.09 1.81 7.36 -2.39 -0.02 1.79 16 34 H 0.07 1.57 7.54 -2.39 -0.02 1.55 16 35 H 0.11 1.75 7.07 -2.39 -0.02 1.73 16 36 H 0.07 1.73 5.68 -2.39 -0.01 1.71 16 37 H 0.16 5.35 6.09 -2.91 -0.02 5.33 16 38 H 0.30 14.99 8.31 -92.71 -0.77 14.22 16 39 H 0.17 4.99 7.60 -2.91 -0.02 4.96 16 40 H 0.19 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -77.47 359.91 -0.56 -78.03 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.43 Total: 22.97 kcal Atomic # 6 Polarization: -55.50 SS G_CDS: 4.90 Total: -50.60 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: -2.13 Total: -66.64 kcal Atomic # 8 Polarization: -143.11 SS G_CDS: -6.26 Total: -149.37 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.74 Total: -3.19 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Atomic # 16 Polarization: 129.53 SS G_CDS: -0.26 Total: 129.26 kcal Total: -77.47 -0.56 -78.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548662741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.278 kcal (2) G-P(sol) polarization free energy of solvation -77.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds