Wall clock time and date at job start Wed Apr 1 2020 04:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47353 * 2 1 4 4 C 1.52996 * 109.46944 * 239.99682 * 2 1 3 5 5 O 1.42902 * 109.47546 * 304.77201 * 4 2 1 6 6 N 1.46501 * 109.46825 * 120.00222 * 2 1 3 7 7 C 1.46506 * 120.00048 * 55.04798 * 6 2 1 8 8 C 1.34783 * 120.00073 * 235.04410 * 6 2 1 9 9 O 1.21564 * 119.99701 * 5.41722 * 8 6 2 10 10 C 1.47688 * 119.99761 * 185.41310 * 8 6 2 11 11 C 1.39661 * 120.16763 * 43.25499 * 10 8 6 12 12 C 1.37852 * 119.87584 * 179.97438 * 11 10 8 13 13 S 1.76201 * 119.89196 * 179.97438 * 12 11 10 14 14 O 1.42100 * 106.40319 * 336.46296 * 13 12 11 15 15 O 1.42092 * 106.40533 * 203.53908 * 13 12 11 16 16 C 1.76203 * 107.21951 * 89.99707 * 13 12 11 17 17 H 1.08004 * 119.99750 * 0.02562 * 16 13 12 18 18 C 1.37873 * 120.00205 * 179.72478 * 16 13 12 19 19 N 1.31519 * 120.00042 * 0.28004 * 18 16 13 20 20 Si 1.86805 * 119.99976 * 180.27741 * 18 16 13 21 21 H 1.48493 * 109.47160 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46953 * 120.00097 * 20 18 16 23 23 H 1.48498 * 109.47208 * 240.00016 * 20 18 16 24 24 C 1.38458 * 120.22235 * 0.25233 * 12 11 10 25 25 C 1.38213 * 120.33770 * 359.49156 * 24 12 11 26 26 C 1.38321 * 120.11270 * 0.50734 * 25 24 12 27 27 F 1.35094 * 120.10801 * 179.72485 * 26 25 24 28 28 H 1.09005 * 109.46791 * 59.99444 * 1 2 3 29 29 H 1.08995 * 109.47353 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46974 * 300.00122 * 1 2 3 31 31 H 1.09001 * 109.46985 * 64.77459 * 4 2 1 32 32 H 1.09001 * 109.47019 * 184.77091 * 4 2 1 33 33 H 0.96698 * 113.99895 * 179.97438 * 5 4 2 34 34 H 1.09003 * 109.46975 * 215.10469 * 7 6 2 35 35 H 1.08996 * 109.46829 * 335.09904 * 7 6 2 36 36 H 1.09002 * 109.47027 * 95.10189 * 7 6 2 37 37 H 1.07997 * 120.06455 * 359.97438 * 11 10 8 38 38 H 0.96999 * 119.99680 * 179.97438 * 19 18 16 39 39 H 1.07999 * 119.83720 * 179.72102 * 24 12 11 40 40 H 1.07993 * 119.93936 * 180.25605 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 1.4743 -2.0324 -1.3066 6 7 2.0183 -0.6907 1.1962 7 6 1.5771 -2.0577 1.4841 8 6 2.8734 -0.0685 2.0318 9 8 3.1628 1.0978 1.8475 10 6 3.4587 -0.8036 3.1712 11 6 3.9289 -2.1072 2.9983 12 6 4.4746 -2.7876 4.0658 13 16 5.0673 -4.4326 3.8483 14 8 4.3811 -4.9607 2.7216 15 8 5.0390 -5.0423 5.1315 16 6 6.7645 -4.3191 3.3887 17 1 7.2346 -3.3514 3.2935 18 6 7.4941 -5.4657 3.1567 19 7 6.9218 -6.6441 3.2730 20 14 9.2955 -5.3455 2.6770 21 1 9.6970 -3.9172 2.6150 22 1 10.1250 -6.0489 3.6881 23 1 9.4967 -5.9749 1.3471 24 6 4.5533 -2.1848 5.3098 25 6 4.0955 -0.8931 5.4898 26 6 3.5454 -0.1975 4.4283 27 9 3.0930 1.0630 4.6057 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7481 -0.1605 -2.1371 32 1 3.1266 -0.7959 -1.2075 33 1 1.7543 -2.5482 -2.0751 34 1 1.4807 -2.1890 2.5619 35 1 0.6126 -2.2359 1.0087 36 1 2.3098 -2.7653 1.0959 37 1 3.8651 -2.5814 2.0301 38 1 7.4351 -7.4508 3.1093 39 1 4.9778 -2.7252 6.1429 40 1 4.1638 -0.4277 6.4619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548702483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:29 Heat of formation + Delta-G solvation = -182.576578 kcal Electronic energy + Delta-G solvation = -28910.632028 eV Core-core repulsion = 24539.204318 eV Total energy + Delta-G solvation = -4371.427710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.96751 -40.39601 -38.45002 -37.36705 -35.43858 -35.32000 -34.12735 -33.20954 -32.47627 -30.64634 -30.47338 -27.20611 -26.29499 -26.25324 -24.24356 -22.99508 -21.61754 -19.61761 -18.80168 -18.09655 -17.55656 -17.34069 -16.81846 -16.55023 -16.32620 -15.93588 -15.60870 -15.31374 -15.01709 -14.66566 -14.25087 -14.07219 -13.99289 -13.87821 -13.52006 -13.10730 -13.03388 -12.90855 -12.69108 -12.49734 -12.35476 -12.13196 -11.93126 -11.51280 -11.44642 -11.30291 -11.29911 -11.09786 -10.64660 -10.44068 -10.34138 -10.25143 -10.07714 -9.72945 -9.36004 -9.07921 -9.07014 -8.80309 -8.69702 -6.82837 -5.46529 0.72552 1.05762 1.94229 2.61469 2.84545 3.00094 3.09100 3.16705 3.47908 3.98947 4.09617 4.11821 4.32706 4.52583 4.65971 4.76001 4.88447 5.08868 5.10662 5.20087 5.22061 5.25461 5.29689 5.39868 5.54917 5.59317 5.63541 5.68451 5.73385 5.80420 5.91912 6.02482 6.10238 6.10664 6.17884 6.46060 6.74502 6.77013 7.19839 7.25871 7.45749 7.83299 8.05729 8.75828 10.11923 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011733 B = 0.004093 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.792255 B = 6838.739955 C = 7993.266726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.137 3.863 3 H 0.111 0.889 4 C 0.066 3.934 5 O -0.565 6.565 6 N -0.600 5.600 7 C 0.075 3.925 8 C 0.568 3.432 9 O -0.533 6.533 10 C -0.196 4.196 11 C 0.033 3.967 12 C -0.662 4.662 13 S 2.604 3.396 14 O -0.978 6.978 15 O -0.979 6.979 16 C -1.002 5.002 17 H 0.106 0.894 18 C 0.133 3.867 19 N -0.840 5.840 20 Si 0.923 3.077 21 H -0.261 1.261 22 H -0.269 1.269 23 H -0.269 1.269 24 C 0.025 3.975 25 C -0.184 4.184 26 C 0.181 3.819 27 F -0.123 7.123 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.380 0.620 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.157 0.843 38 H 0.293 0.707 39 H 0.157 0.843 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.812 9.719 -5.190 14.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 H 0.129 0.871 4 C -0.013 4.013 5 O -0.371 6.371 6 N -0.333 5.333 7 C -0.067 4.067 8 C 0.356 3.644 9 O -0.411 6.411 10 C -0.200 4.200 11 C 0.014 3.986 12 C -0.742 4.742 13 S 2.783 3.217 14 O -0.976 6.976 15 O -0.976 6.976 16 C -1.135 5.135 17 H 0.125 0.875 18 C -0.085 4.085 19 N -0.469 5.469 20 Si 0.746 3.254 21 H -0.184 1.184 22 H -0.194 1.194 23 H -0.194 1.194 24 C 0.006 3.994 25 C -0.204 4.204 26 C 0.161 3.839 27 F -0.102 7.102 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.228 0.772 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.174 0.826 38 H 0.103 0.897 39 H 0.174 0.826 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.549 9.734 -4.614 14.395 hybrid contribution 1.498 0.826 -0.782 1.881 sum -8.051 10.560 -5.396 14.333 Atomic orbital electron populations 1.22038 0.94074 1.03303 1.02077 1.21216 0.95231 0.97129 0.83003 0.87078 1.22564 0.97331 0.84411 0.97028 1.86493 1.72953 1.26866 1.50790 1.47737 1.45394 1.16327 1.23878 1.22062 1.01946 0.81493 1.01180 1.18085 0.78453 0.85959 0.81882 1.90768 1.61007 1.15902 1.73394 1.19926 1.09734 0.96842 0.93522 1.21168 0.88205 0.90110 0.99069 1.31825 1.13966 1.29292 0.99085 1.01239 0.76757 0.69907 0.73781 1.93348 1.76816 1.75027 1.52361 1.93352 1.89066 1.72144 1.43025 1.30119 1.18916 1.00648 1.63843 0.87539 1.24760 1.01105 0.93309 0.89343 1.69896 1.38906 0.98810 1.39333 0.86080 0.80742 0.79661 0.78876 1.18445 1.19405 1.19442 1.21096 0.89605 0.92465 0.96245 1.21215 1.04102 0.96245 0.98827 1.17779 0.93853 0.79136 0.93149 1.91546 1.85927 1.36881 1.95805 0.91537 0.90908 0.92383 0.92617 0.93057 0.77249 0.91609 0.89707 0.90872 0.82603 0.89687 0.82581 0.83516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.89 37.16 0.33 -1.18 16 2 C 0.14 1.58 3.16 -67.93 -0.21 1.36 16 3 H 0.11 1.36 6.91 -51.93 -0.36 1.00 16 4 C 0.07 0.63 6.83 37.16 0.25 0.88 16 5 O -0.57 -5.38 10.80 -35.23 -0.38 -5.76 16 6 N -0.60 -8.40 2.76 -175.10 -0.48 -8.88 16 7 C 0.08 0.99 7.34 59.85 0.44 1.43 16 8 C 0.57 9.58 7.10 -12.40 -0.09 9.49 16 9 O -0.53 -10.19 15.75 5.31 0.08 -10.11 16 10 C -0.20 -3.36 4.91 -104.91 -0.52 -3.88 16 11 C 0.03 0.60 7.44 -39.19 -0.29 0.31 16 12 C -0.66 -12.90 5.81 -39.64 -0.23 -13.13 16 13 S 2.60 63.78 4.65 -107.50 -0.50 63.28 16 14 O -0.98 -25.74 17.15 -57.17 -0.98 -26.72 16 15 O -0.98 -26.07 17.14 -57.17 -0.98 -27.05 16 16 C -1.00 -25.83 9.58 30.60 0.29 -25.53 16 17 H 0.11 2.53 7.81 -52.48 -0.41 2.12 16 18 C 0.13 3.49 5.46 -17.82 -0.10 3.40 16 19 N -0.84 -23.16 13.19 55.43 0.73 -22.43 16 20 Si 0.92 19.50 29.54 -169.99 -5.02 14.48 16 21 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 C 0.02 0.41 9.51 -39.51 -0.38 0.04 16 25 C -0.18 -2.74 10.02 -39.56 -0.40 -3.13 16 26 C 0.18 2.98 7.25 -38.96 -0.28 2.70 16 27 F -0.12 -2.05 16.34 2.25 0.04 -2.02 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.72 5.91 -51.93 -0.31 0.41 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.38 2.22 9.12 45.56 0.42 2.63 16 34 H 0.07 0.87 6.77 -51.93 -0.35 0.52 16 35 H 0.08 0.97 5.69 -51.93 -0.30 0.68 16 36 H 0.07 1.03 6.61 -51.93 -0.34 0.68 16 37 H 0.16 2.72 5.61 -52.49 -0.29 2.42 16 38 H 0.29 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.16 2.42 7.60 -52.49 -0.40 2.02 16 40 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 352.90 15.07 5.32 5.32 Total: -1.00 -34.32 352.90 -6.94 -41.26 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -3.59 Total: 5.86 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: -1.17 Total: -27.23 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: 0.25 Total: -31.30 kcal Atomic # 8 Polarization: -67.39 SS G_CDS: -2.26 Total: -69.64 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Atomic # 16 Polarization: 63.78 SS G_CDS: -0.50 Total: 63.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.32 -6.94 -41.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548702483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.316 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds