Wall clock time and date at job start Wed Apr 1 2020 04:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47353 * 2 1 4 4 C 1.52996 * 109.46944 * 239.99682 * 2 1 3 5 5 O 1.42902 * 109.47546 * 304.77201 * 4 2 1 6 6 N 1.46501 * 109.46825 * 120.00222 * 2 1 3 7 7 C 1.46506 * 120.00048 * 55.04798 * 6 2 1 8 8 C 1.34783 * 120.00073 * 235.04410 * 6 2 1 9 9 O 1.21564 * 119.99701 * 5.41722 * 8 6 2 10 10 C 1.47688 * 119.99761 * 185.41310 * 8 6 2 11 11 C 1.39661 * 120.16763 * 43.25499 * 10 8 6 12 12 C 1.37852 * 119.87584 * 179.97438 * 11 10 8 13 13 S 1.76201 * 119.89196 * 179.97438 * 12 11 10 14 14 O 1.42100 * 106.40319 * 336.46296 * 13 12 11 15 15 O 1.42092 * 106.40533 * 203.53908 * 13 12 11 16 16 C 1.76203 * 107.21951 * 89.99707 * 13 12 11 17 17 H 1.08004 * 119.99750 * 0.02562 * 16 13 12 18 18 C 1.37873 * 120.00205 * 179.72478 * 16 13 12 19 19 N 1.31519 * 120.00042 * 0.28004 * 18 16 13 20 20 Si 1.86805 * 119.99976 * 180.27741 * 18 16 13 21 21 H 1.48493 * 109.47160 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46953 * 120.00097 * 20 18 16 23 23 H 1.48498 * 109.47208 * 240.00016 * 20 18 16 24 24 C 1.38458 * 120.22235 * 0.25233 * 12 11 10 25 25 C 1.38213 * 120.33770 * 359.49156 * 24 12 11 26 26 C 1.38321 * 120.11270 * 0.50734 * 25 24 12 27 27 F 1.35094 * 120.10801 * 179.72485 * 26 25 24 28 28 H 1.09005 * 109.46791 * 59.99444 * 1 2 3 29 29 H 1.08995 * 109.47353 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46974 * 300.00122 * 1 2 3 31 31 H 1.09001 * 109.46985 * 64.77459 * 4 2 1 32 32 H 1.09001 * 109.47019 * 184.77091 * 4 2 1 33 33 H 0.96698 * 113.99895 * 179.97438 * 5 4 2 34 34 H 1.09003 * 109.46975 * 215.10469 * 7 6 2 35 35 H 1.08996 * 109.46829 * 335.09904 * 7 6 2 36 36 H 1.09002 * 109.47027 * 95.10189 * 7 6 2 37 37 H 1.07997 * 120.06455 * 359.97438 * 11 10 8 38 38 H 0.96999 * 119.99680 * 179.97438 * 19 18 16 39 39 H 1.07999 * 119.83720 * 179.72102 * 24 12 11 40 40 H 1.07993 * 119.93936 * 180.25605 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 1.4743 -2.0324 -1.3066 6 7 2.0183 -0.6907 1.1962 7 6 1.5771 -2.0577 1.4841 8 6 2.8734 -0.0685 2.0318 9 8 3.1628 1.0978 1.8475 10 6 3.4587 -0.8036 3.1712 11 6 3.9289 -2.1072 2.9983 12 6 4.4746 -2.7876 4.0658 13 16 5.0673 -4.4326 3.8483 14 8 4.3811 -4.9607 2.7216 15 8 5.0390 -5.0423 5.1315 16 6 6.7645 -4.3191 3.3887 17 1 7.2346 -3.3514 3.2935 18 6 7.4941 -5.4657 3.1567 19 7 6.9218 -6.6441 3.2730 20 14 9.2955 -5.3455 2.6770 21 1 9.6970 -3.9172 2.6150 22 1 10.1250 -6.0489 3.6881 23 1 9.4967 -5.9749 1.3471 24 6 4.5533 -2.1848 5.3098 25 6 4.0955 -0.8931 5.4898 26 6 3.5454 -0.1975 4.4283 27 9 3.0930 1.0630 4.6057 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7481 -0.1605 -2.1371 32 1 3.1266 -0.7959 -1.2075 33 1 1.7543 -2.5482 -2.0751 34 1 1.4807 -2.1890 2.5619 35 1 0.6126 -2.2359 1.0087 36 1 2.3098 -2.7653 1.0959 37 1 3.8651 -2.5814 2.0301 38 1 7.4351 -7.4508 3.1093 39 1 4.9778 -2.7252 6.1429 40 1 4.1638 -0.4277 6.4619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548702483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:27 Heat of formation + Delta-G solvation = -209.575497 kcal Electronic energy + Delta-G solvation = -28911.802789 eV Core-core repulsion = 24539.204318 eV Total energy + Delta-G solvation = -4372.598471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -50.29239 -41.63717 -39.72534 -38.38145 -37.41339 -36.35685 -36.13164 -35.18078 -33.59049 -32.03940 -31.64514 -28.27001 -28.21966 -27.18035 -25.49977 -24.38968 -22.81123 -20.93404 -20.46562 -19.31961 -18.93320 -18.72318 -18.19014 -18.00186 -17.64105 -17.31811 -16.88955 -16.80672 -16.42698 -15.85532 -15.79485 -15.71724 -15.35755 -14.98803 -14.64017 -14.51802 -14.39193 -14.04777 -13.95428 -13.80262 -13.65182 -13.31230 -13.23693 -13.01682 -13.00609 -12.77756 -12.47059 -12.38177 -12.35227 -12.26981 -11.99534 -11.71906 -11.24799 -11.22294 -10.91069 -10.87518 -10.40068 -10.33331 -9.82807 -8.76717 -7.50098 -0.67107 -0.30349 0.08834 1.30078 1.35715 1.38244 1.54873 1.71245 2.10847 2.23724 2.58149 2.77631 3.08244 3.35997 3.38922 3.43363 3.74077 3.76156 3.82492 3.93412 4.05559 4.14765 4.19848 4.34445 4.44420 4.51251 4.55788 4.58058 4.61667 4.66074 4.76517 4.79578 4.92318 5.00032 5.03340 5.26949 5.28641 5.40690 5.45035 5.87649 6.07663 6.77404 6.79514 6.90938 8.20851 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011733 B = 0.004093 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.792255 B = 6838.739955 C = 7993.266726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.126 3.874 3 H 0.103 0.897 4 C 0.071 3.929 5 O -0.578 6.578 6 N -0.592 5.592 7 C 0.076 3.924 8 C 0.562 3.438 9 O -0.562 6.562 10 C -0.200 4.200 11 C 0.032 3.968 12 C -0.669 4.669 13 S 2.603 3.397 14 O -1.011 7.011 15 O -1.011 7.011 16 C -1.024 5.024 17 H 0.120 0.880 18 C 0.076 3.924 19 N -0.885 5.885 20 Si 0.986 3.014 21 H -0.251 1.251 22 H -0.257 1.257 23 H -0.258 1.258 24 C 0.022 3.978 25 C -0.161 4.161 26 C 0.180 3.820 27 F -0.122 7.122 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.396 0.604 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.154 0.846 38 H 0.301 0.699 39 H 0.170 0.830 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.653 11.230 -5.445 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.024 3.976 3 H 0.120 0.880 4 C -0.008 4.008 5 O -0.386 6.386 6 N -0.324 5.324 7 C -0.066 4.066 8 C 0.351 3.649 9 O -0.442 6.442 10 C -0.205 4.205 11 C 0.013 3.987 12 C -0.755 4.755 13 S 2.790 3.210 14 O -1.008 7.008 15 O -1.009 7.009 16 C -1.157 5.157 17 H 0.138 0.862 18 C -0.137 4.137 19 N -0.516 5.516 20 Si 0.805 3.195 21 H -0.174 1.174 22 H -0.181 1.181 23 H -0.182 1.182 24 C 0.003 3.997 25 C -0.180 4.180 26 C 0.160 3.840 27 F -0.100 7.100 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.247 0.753 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.172 0.828 38 H 0.111 0.889 39 H 0.187 0.813 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -9.400 11.168 -4.901 15.398 hybrid contribution 1.331 0.447 -0.709 1.573 sum -8.069 11.615 -5.610 15.215 Atomic orbital electron populations 1.21981 0.92313 1.03419 1.02901 1.21511 0.96623 0.96770 0.82696 0.87951 1.22480 0.96374 0.84834 0.97108 1.86440 1.73022 1.27028 1.52151 1.47863 1.44167 1.16395 1.23952 1.22092 1.02515 0.80837 1.01182 1.18123 0.78907 0.85711 0.82206 1.90747 1.62335 1.16903 1.74227 1.20017 1.09690 0.96381 0.94376 1.21080 0.88417 0.90521 0.98680 1.31026 1.16400 1.26965 1.01101 1.00620 0.76404 0.71296 0.72726 1.93297 1.77121 1.77183 1.53192 1.93301 1.89325 1.74408 1.43822 1.30522 1.19981 1.01467 1.63779 0.86236 1.25919 1.06126 0.92803 0.88900 1.69972 1.41079 0.99885 1.40664 0.85148 0.74790 0.80355 0.79249 1.17385 1.18079 1.18217 1.21320 0.89562 0.93396 0.95441 1.21535 1.01523 0.94831 1.00086 1.17988 0.93539 0.79196 0.93296 1.91555 1.85850 1.36812 1.95755 0.89246 0.91023 0.93056 0.89640 0.94511 0.75349 0.91913 0.87782 0.91961 0.82836 0.88863 0.81272 0.79191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.89 71.98 0.64 -1.93 16 2 C 0.13 2.76 3.16 44.99 0.14 2.91 16 3 H 0.10 2.45 6.91 -2.39 -0.02 2.43 16 4 C 0.07 1.26 6.83 71.98 0.49 1.75 16 5 O -0.58 -10.13 10.80 -148.98 -1.61 -11.74 16 6 N -0.59 -16.30 2.76 -826.17 -2.28 -18.58 16 7 C 0.08 1.97 7.34 127.77 0.94 2.91 16 8 C 0.56 18.79 7.10 86.74 0.62 19.41 16 9 O -0.56 -21.34 15.75 -3.92 -0.06 -21.40 16 10 C -0.20 -6.74 4.91 -20.05 -0.10 -6.84 16 11 C 0.03 1.16 7.44 22.52 0.17 1.33 16 12 C -0.67 -26.08 5.81 22.23 0.13 -25.95 16 13 S 2.60 130.88 4.65 -56.49 -0.26 130.62 16 14 O -1.01 -55.25 17.15 -128.00 -2.20 -57.45 16 15 O -1.01 -55.38 17.14 -128.00 -2.19 -57.57 16 16 C -1.02 -53.44 9.58 67.73 0.65 -52.79 16 17 H 0.12 5.68 7.81 -2.91 -0.02 5.66 16 18 C 0.08 4.02 5.46 84.65 0.46 4.48 16 19 N -0.89 -49.80 13.19 21.45 0.28 -49.52 16 20 Si 0.99 39.27 29.54 68.60 2.03 41.30 16 21 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 22 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 23 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 24 C 0.02 0.69 9.51 22.32 0.21 0.91 16 25 C -0.16 -4.31 10.02 22.28 0.22 -4.08 16 26 C 0.18 5.59 7.25 22.67 0.16 5.76 16 27 F -0.12 -3.80 16.34 44.97 0.73 -3.06 16 28 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.07 1.27 5.91 -2.39 -0.01 1.26 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.40 4.01 9.12 -74.06 -0.68 3.34 16 34 H 0.06 1.66 6.77 -2.39 -0.02 1.64 16 35 H 0.10 2.28 5.69 -2.39 -0.01 2.27 16 36 H 0.06 1.78 6.61 -2.39 -0.02 1.76 16 37 H 0.15 5.53 5.61 -2.91 -0.02 5.52 16 38 H 0.30 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.17 4.99 7.60 -2.91 -0.02 4.97 16 40 H 0.19 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -75.40 352.90 -0.39 -75.79 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.44 Total: 23.77 kcal Atomic # 6 Polarization: -56.88 SS G_CDS: 4.74 Total: -52.15 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: -2.00 Total: -68.10 kcal Atomic # 8 Polarization: -142.11 SS G_CDS: -6.06 Total: -148.17 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.73 Total: -3.06 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Atomic # 16 Polarization: 130.88 SS G_CDS: -0.26 Total: 130.62 kcal Total: -75.40 -0.39 -75.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548702483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.786 kcal (2) G-P(sol) polarization free energy of solvation -75.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds