Wall clock time and date at job start Wed Apr 1 2020 03:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99956 * 2 1 4 4 H 1.48500 * 109.47200 * 274.45393 * 3 2 1 5 5 H 1.48492 * 109.47242 * 34.45547 * 3 2 1 6 6 H 1.48505 * 109.47184 * 154.45782 * 3 2 1 7 7 C 1.38812 * 120.00206 * 180.27339 * 2 1 3 8 8 H 1.08001 * 119.99731 * 353.93937 * 7 2 1 9 9 N 1.36938 * 120.00177 * 173.93125 * 7 2 1 10 10 C 1.46501 * 119.99979 * 184.81125 * 9 7 2 11 11 C 1.53001 * 109.47152 * 174.88413 * 10 9 7 12 12 N 1.46500 * 110.01325 * 53.32342 * 11 10 9 13 13 C 1.34772 * 119.99871 * 62.42451 * 12 11 10 14 14 O 1.21714 * 120.00151 * 5.01916 * 13 12 11 15 15 C 1.46544 * 119.99684 * 185.02730 * 13 12 11 16 16 C 1.37963 * 126.22234 * 179.68798 * 15 13 12 17 17 C 1.39792 * 107.12822 * 179.90434 * 16 15 13 18 18 Cl 1.73597 * 126.06282 * 180.11462 * 17 16 15 19 19 C 1.35720 * 107.87452 * 0.35609 * 17 16 15 20 20 Cl 1.73599 * 125.58268 * 179.75723 * 19 17 16 21 21 N 1.35662 * 108.83163 * 359.77781 * 19 17 16 22 22 H 0.96996 * 125.69547 * 180.02562 * 21 19 17 23 23 C 1.54265 * 110.02969 * 291.93439 * 11 10 9 24 24 C 1.54973 * 104.15622 * 217.13321 * 23 11 10 25 25 C 1.54889 * 102.77873 * 37.89176 * 24 23 11 26 26 C 1.53873 * 110.03307 * 174.71455 * 11 10 9 27 27 H 0.96995 * 119.99870 * 359.72705 * 1 2 3 28 28 H 0.96993 * 120.00036 * 4.82218 * 9 7 2 29 29 H 1.09000 * 109.47272 * 294.88959 * 10 9 7 30 30 H 1.09006 * 109.47115 * 54.88683 * 10 9 7 31 31 H 0.97002 * 119.99963 * 242.41059 * 12 11 10 32 32 H 1.07997 * 126.43641 * 0.02562 * 16 15 13 33 33 H 1.08996 * 110.48826 * 335.77746 * 23 11 10 34 34 H 1.08996 * 110.48819 * 98.42956 * 23 11 10 35 35 H 1.08998 * 110.72097 * 279.57475 * 24 23 11 36 36 H 1.09004 * 110.76062 * 156.22130 * 24 23 11 37 37 H 1.08994 * 110.48604 * 203.40320 * 25 24 23 38 38 H 1.09001 * 110.48945 * 80.75553 * 25 24 23 39 39 H 1.08992 * 110.03351 * 238.57043 * 26 11 10 40 40 H 1.08997 * 110.03125 * 0.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4035 2.1008 -1.3958 5 1 1.4980 2.6236 0.7921 6 1 3.5917 1.4148 0.6037 7 6 2.0103 -1.2021 -0.0057 8 1 1.4748 -2.1353 0.0886 9 7 3.3739 -1.2048 -0.1311 10 6 4.0967 -2.4742 -0.2432 11 6 5.5793 -2.1961 -0.4987 12 7 6.1024 -1.2868 0.5240 13 6 6.1098 -1.6615 1.8186 14 8 5.7678 -2.7879 2.1281 15 6 6.5295 -0.7127 2.8535 16 6 6.5804 -0.9562 4.2105 17 6 7.0359 0.2153 4.8223 18 17 7.2847 0.4491 6.5243 19 6 7.2439 1.1391 3.8501 20 17 7.8067 2.7619 4.1024 21 7 6.9396 0.5869 2.6489 22 1 7.0009 1.0323 1.7894 23 6 5.7674 -1.5794 -1.9002 24 6 7.0910 -2.2010 -2.4133 25 6 7.0153 -3.6542 -1.8828 26 6 6.3726 -3.5145 -0.4873 27 1 -0.4850 0.8400 0.0040 28 1 3.8613 -0.3664 -0.1456 29 1 3.9870 -3.0378 0.6833 30 1 3.6877 -3.0533 -1.0713 31 1 6.4435 -0.4152 0.2694 32 1 6.3194 -1.8793 4.7068 33 1 4.9388 -1.8548 -2.5525 34 1 5.8559 -0.4952 -1.8312 35 1 7.9506 -1.6801 -1.9915 36 1 7.1268 -2.1888 -3.5026 37 1 8.0139 -4.0833 -1.8017 38 1 6.3882 -4.2652 -2.5321 39 1 7.1472 -3.4776 0.2785 40 1 5.7012 -4.3525 -0.3002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568003751.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:32 Heat of formation + Delta-G solvation = -14.445662 kcal Electronic energy + Delta-G solvation = -26235.425426 eV Core-core repulsion = 22329.873840 eV Total energy + Delta-G solvation = -3905.551586 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.71973 -41.19844 -38.79971 -37.93836 -37.55407 -36.33677 -34.78267 -33.42012 -32.32572 -30.85242 -29.75591 -29.44142 -26.37160 -24.45425 -23.70199 -22.22845 -21.81642 -21.55761 -20.68262 -20.16354 -19.60555 -17.52612 -17.36431 -16.72925 -16.51685 -16.26914 -15.98757 -15.60050 -15.42834 -15.32494 -15.05426 -14.77021 -14.63489 -14.46550 -14.09412 -13.76355 -13.67280 -13.03589 -12.95553 -12.90307 -12.67816 -12.53268 -12.31480 -12.18035 -12.01638 -11.96286 -11.94467 -11.86859 -11.77357 -11.40132 -11.20909 -10.91906 -10.24472 -10.14313 -9.41629 -9.29663 -8.04795 -5.37727 0.01325 0.27408 0.97750 1.03807 1.26054 1.36138 1.43075 1.83786 2.16240 2.20520 2.44641 3.24294 3.41257 3.57488 3.65601 3.70886 3.81532 3.95735 4.18008 4.36011 4.43523 4.47427 4.55236 4.65822 4.76482 4.81543 4.89169 4.96354 5.06450 5.11589 5.16129 5.19335 5.25651 5.34448 5.49889 5.57071 5.74020 5.83118 6.17930 6.40985 7.05587 7.06182 7.79234 8.03351 9.17237 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.008725 B = 0.004370 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.446486 B = 6406.023618 C = 8043.256650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.300 1.300 6 H -0.249 1.249 7 C -0.234 4.234 8 H 0.046 0.954 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.172 3.828 12 N -0.704 5.704 13 C 0.594 3.406 14 O -0.544 6.544 15 C -0.021 4.021 16 C -0.097 4.097 17 C -0.110 4.110 18 Cl -0.023 7.023 19 C 0.104 3.896 20 Cl 0.021 6.979 21 N -0.508 5.508 22 H 0.440 0.560 23 C -0.121 4.121 24 C -0.112 4.112 25 C -0.120 4.120 26 C -0.112 4.112 27 H 0.257 0.743 28 H 0.366 0.634 29 H 0.013 0.987 30 H 0.035 0.965 31 H 0.405 0.595 32 H 0.165 0.835 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.801 3.159 1.896 25.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.783 3.217 4 H -0.196 1.196 5 H -0.227 1.227 6 H -0.174 1.174 7 C -0.365 4.365 8 H 0.065 0.935 9 N -0.389 5.389 10 C 0.023 3.977 11 C 0.086 3.914 12 N -0.356 5.356 13 C 0.380 3.620 14 O -0.421 6.421 15 C -0.135 4.135 16 C -0.124 4.124 17 C -0.144 4.144 18 Cl 0.005 6.995 19 C -0.042 4.042 20 Cl 0.049 6.951 21 N -0.110 5.110 22 H 0.282 0.718 23 C -0.159 4.159 24 C -0.150 4.150 25 C -0.157 4.157 26 C -0.151 4.151 27 H 0.066 0.934 28 H 0.199 0.801 29 H 0.031 0.969 30 H 0.053 0.947 31 H 0.241 0.759 32 H 0.183 0.817 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 24.406 2.447 2.077 24.616 hybrid contribution -0.380 1.635 0.120 1.683 sum 24.026 4.082 2.197 24.469 Atomic orbital electron populations 1.69914 1.07327 1.26680 1.59494 1.25536 0.96103 1.01369 1.02518 0.85370 0.78787 0.79331 0.78196 1.19593 1.22676 1.17381 1.18978 0.83265 0.93385 1.40918 0.93543 1.42404 1.02833 1.03717 1.89969 1.21193 0.90538 0.87901 0.98104 1.21298 0.91305 0.90813 0.87966 1.45890 1.63594 1.20417 1.05709 1.16899 0.77193 0.85964 0.81895 1.90853 1.48730 1.20606 1.81941 1.20320 1.12810 0.85062 0.95340 1.21256 1.01554 0.98808 0.90751 1.19647 1.13396 0.94897 0.86509 1.98344 1.95640 1.96841 1.08661 1.20645 1.08290 0.89190 0.86055 1.98435 1.86854 1.14274 1.95521 1.41786 1.50448 1.10337 1.08428 0.71806 1.22671 0.99784 1.00705 0.92768 1.22512 0.96001 0.95053 1.01414 1.22391 1.01141 0.97667 0.94527 1.22347 0.98803 0.95168 0.98822 0.93370 0.80062 0.96875 0.94745 0.75893 0.81718 0.90527 0.90105 0.90142 0.89663 0.90041 0.91182 0.91474 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.67 13.97 21.65 0.30 -63.37 16 2 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.96 44.10 27.77 68.60 1.91 46.01 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.25 -9.90 6.49 99.48 0.65 -9.25 16 7 C -0.23 -13.62 10.47 84.03 0.88 -12.74 16 8 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 9 N -0.74 -34.21 5.10 -343.44 -1.75 -35.96 16 10 C 0.15 5.93 4.59 86.38 0.40 6.33 16 11 C 0.17 4.75 0.58 4.33 0.00 4.75 16 12 N -0.70 -17.69 4.39 -423.68 -1.86 -19.55 16 13 C 0.59 17.81 6.93 86.41 0.60 18.41 16 14 O -0.54 -20.35 14.10 -4.39 -0.06 -20.41 16 15 C -0.02 -0.54 7.05 40.31 0.28 -0.26 16 16 C -0.10 -2.54 10.64 22.58 0.24 -2.30 16 17 C -0.11 -2.58 6.66 22.06 0.15 -2.44 16 18 Cl -0.02 -0.50 29.12 -2.72 -0.08 -0.58 16 19 C 0.10 2.16 7.75 83.52 0.65 2.80 16 20 Cl 0.02 0.35 29.13 -2.72 -0.08 0.27 16 21 N -0.51 -9.95 6.01 -174.51 -1.05 -10.99 16 22 H 0.44 5.83 8.20 -92.71 -0.76 5.07 16 23 C -0.12 -2.67 5.82 31.70 0.18 -2.48 16 24 C -0.11 -1.74 6.91 31.91 0.22 -1.52 16 25 C -0.12 -2.13 6.83 31.67 0.22 -1.91 16 26 C -0.11 -2.81 5.17 31.32 0.16 -2.64 16 27 H 0.26 15.82 8.31 -92.71 -0.77 15.04 16 28 H 0.37 15.30 5.04 -92.71 -0.47 14.84 16 29 H 0.01 0.61 6.75 -2.39 -0.02 0.59 16 30 H 0.03 1.40 8.00 -2.38 -0.02 1.38 16 31 H 0.40 7.31 7.37 -92.71 -0.68 6.63 16 32 H 0.17 4.28 8.06 -2.91 -0.02 4.26 16 33 H 0.08 1.95 7.76 -2.39 -0.02 1.93 16 34 H 0.08 1.56 7.71 -2.39 -0.02 1.54 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.74 6.96 -2.39 -0.02 1.72 16 40 H 0.06 1.64 7.67 -2.39 -0.02 1.63 16 Total: -1.00 -74.63 357.65 0.92 -73.71 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: -0.85 Total: 28.18 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 4.45 Total: 2.70 kcal Atomic # 7 Polarization: -125.52 SS G_CDS: -4.36 Total: -129.87 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.06 Total: -20.41 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.91 Total: 46.01 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.16 Total: -0.31 kcal Total: -74.63 0.92 -73.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568003751.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.265 kcal (2) G-P(sol) polarization free energy of solvation -74.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds