Wall clock time and date at job start Wed Apr 1 2020 02:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47490 * 2 1 4 4 C 1.52995 * 109.46748 * 239.99793 * 2 1 3 5 5 N 1.46500 * 109.47361 * 185.00030 * 4 2 1 6 6 C 1.34776 * 120.00431 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99998 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00161 * 179.97438 * 6 5 4 9 9 S 1.80998 * 109.47126 * 180.02562 * 8 6 5 10 10 C 1.76199 * 100.00204 * 180.02562 * 9 8 6 11 11 H 1.08003 * 119.99630 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00264 * 180.02562 * 10 9 8 13 13 N 1.31629 * 119.99790 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99762 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47402 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.46802 * 120.00402 * 14 12 10 17 17 H 1.48506 * 109.47000 * 239.99767 * 14 12 10 18 18 N 1.46505 * 109.47125 * 120.00141 * 2 1 3 19 19 C 1.34773 * 120.00095 * 274.99839 * 18 2 1 20 20 O 1.21703 * 119.99823 * 359.97438 * 19 18 2 21 21 C 1.46660 * 120.00151 * 179.72491 * 19 18 2 22 22 C 1.37896 * 126.22489 * 180.27247 * 21 19 18 23 23 C 1.39884 * 107.09700 * 180.02562 * 22 21 19 24 24 Cl 1.73604 * 126.07616 * 179.97438 * 23 22 21 25 25 C 1.35520 * 107.85517 * 359.97438 * 23 22 21 26 26 N 1.35636 * 108.84710 * 359.73355 * 25 23 22 27 27 H 0.96998 * 125.67632 * 180.29514 * 26 25 23 28 28 H 1.08995 * 109.47220 * 59.99547 * 1 2 3 29 29 H 1.08998 * 109.47796 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46874 * 299.99999 * 1 2 3 31 31 H 1.09005 * 109.47349 * 305.00113 * 4 2 1 32 32 H 1.09002 * 109.47351 * 65.00284 * 4 2 1 33 33 H 0.96998 * 119.99598 * 0.02562 * 5 4 2 34 34 H 1.08997 * 109.47510 * 300.00693 * 8 6 5 35 35 H 1.08994 * 109.46713 * 60.00689 * 8 6 5 36 36 H 0.97003 * 119.99792 * 179.97438 * 13 12 10 37 37 H 0.97000 * 119.99792 * 94.99404 * 18 2 1 38 38 H 1.07998 * 126.45486 * 0.02562 * 22 21 19 39 39 H 1.07997 * 125.58083 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.4999 -0.8265 -1.1907 6 6 4.1728 -1.4293 -2.1908 7 8 3.5697 -1.8844 -3.1395 8 6 5.6748 -1.5370 -2.1308 9 16 6.2780 -2.3905 -3.6085 10 6 8.0098 -2.3777 -3.2838 11 1 8.3860 -1.9251 -2.3783 12 6 8.8904 -2.9492 -4.1918 13 7 8.4318 -3.5003 -5.2957 14 14 10.7262 -2.9362 -3.8471 15 1 10.9815 -2.2609 -2.5494 16 1 11.2283 -4.3325 -3.7864 17 1 11.4284 -2.2044 -4.9319 18 7 2.0183 -0.6907 1.1962 19 6 2.1471 -0.0184 2.3571 20 8 1.8581 1.1626 2.4117 21 6 2.6302 -0.7112 3.5561 22 6 2.8048 -0.1533 4.8050 23 6 3.2794 -1.1660 5.6452 24 17 3.6663 -0.9995 7.3293 25 6 3.3836 -2.3003 4.9109 26 7 2.9859 -2.0382 3.6409 27 1 2.9591 -2.6787 2.9130 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6052 -1.7199 -1.2951 32 1 1.7515 -0.1584 -2.1370 33 1 3.9823 -0.4629 -0.4317 34 1 6.1092 -0.5384 -2.0855 35 1 5.9635 -2.0993 -1.2428 36 1 9.0473 -3.8995 -5.9304 37 1 2.2489 -1.6318 1.1526 38 1 2.6116 0.8725 5.0823 39 1 3.7236 -3.2574 5.2779 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579327885.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:01 Heat of formation + Delta-G solvation = -40.787665 kcal Electronic energy + Delta-G solvation = -24192.124636 eV Core-core repulsion = 20287.474481 eV Total energy + Delta-G solvation = -3904.650155 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.070 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.88096 -40.00489 -39.08878 -36.76149 -36.61965 -33.86943 -32.48593 -32.00352 -31.29194 -29.66702 -29.29342 -26.13752 -25.45486 -23.90983 -21.77981 -20.95402 -20.71748 -20.47214 -19.61348 -17.92861 -16.89360 -16.62495 -16.37460 -15.80473 -15.66185 -15.17817 -14.92749 -14.85589 -14.56715 -14.22388 -14.13086 -13.91322 -13.50182 -13.34232 -13.20418 -13.01801 -12.96518 -12.63003 -12.33833 -12.22417 -11.91125 -11.41469 -11.22187 -11.11393 -11.07973 -10.80666 -10.56034 -9.87287 -9.72327 -9.53188 -9.36539 -9.14539 -9.07231 -8.76275 -8.31049 -6.57198 -6.27604 -3.98766 0.89057 1.76608 1.98050 2.47342 2.74354 2.87225 2.93025 2.97375 3.17623 3.24072 3.28381 3.60432 4.14700 4.19560 4.36884 4.46603 4.70523 4.70688 4.85454 5.03629 5.07922 5.08214 5.23315 5.27107 5.41236 5.42658 5.56011 5.65073 5.78329 5.81129 5.90322 5.95730 6.04588 6.12313 6.41518 6.65638 6.96529 7.51977 7.54772 7.67229 8.29683 8.45830 9.18129 10.79833 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.009837 B = 0.002331 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.710435 B =12010.904862 C =14391.302358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.133 3.867 3 H 0.100 0.900 4 C 0.112 3.888 5 N -0.741 5.741 6 C 0.532 3.468 7 O -0.515 6.515 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.279 1.279 18 N -0.727 5.727 19 C 0.593 3.407 20 O -0.521 6.521 21 C -0.043 4.043 22 C -0.091 4.091 23 C -0.129 4.129 24 Cl -0.046 7.046 25 C 0.047 3.953 26 N -0.530 5.530 27 H 0.425 0.575 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.398 0.602 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.397 0.603 38 H 0.158 0.842 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.842 3.641 21.530 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 H 0.118 0.882 4 C -0.012 4.012 5 N -0.397 5.397 6 C 0.318 3.682 7 O -0.388 6.388 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.205 1.205 18 N -0.379 5.379 19 C 0.380 3.620 20 O -0.396 6.396 21 C -0.157 4.157 22 C -0.118 4.118 23 C -0.162 4.162 24 Cl -0.017 7.017 25 C -0.091 4.091 26 N -0.127 5.127 27 H 0.264 0.736 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.233 0.767 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.231 0.769 38 H 0.176 0.824 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -16.031 3.601 19.754 25.694 hybrid contribution 2.304 -0.157 1.519 2.764 sum -13.727 3.444 21.273 25.551 Atomic orbital electron populations 1.22114 0.93719 1.02786 1.03382 1.21311 0.95150 0.97973 0.82696 0.88181 1.21633 0.81181 1.01346 0.97087 1.46023 1.06761 1.62149 1.24750 1.20342 0.89555 0.76711 0.81570 1.90717 1.69845 1.45936 1.32342 1.23531 0.93411 1.05804 1.07702 1.85400 1.04755 1.72919 1.20209 1.22897 0.91445 1.44351 1.09699 0.90880 1.24998 0.99658 0.94502 0.94436 1.70024 1.35370 1.35490 1.09355 0.86110 0.82887 0.78009 0.78459 1.19596 1.20542 1.20512 1.46005 1.68101 1.13943 1.09838 1.16931 0.77423 0.86222 0.81432 1.90883 1.49896 1.14576 1.84257 1.20331 1.14556 0.84322 0.96454 1.21189 1.01087 0.99750 0.89734 1.19982 1.13335 0.95469 0.87392 1.98343 1.93234 1.97875 1.12287 1.21815 1.03895 0.99886 0.83512 1.41937 1.50318 1.09618 1.10790 0.73622 0.90771 0.92000 0.91414 0.90883 0.89666 0.76748 0.89161 0.89351 0.92187 0.76891 0.82442 0.80032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.48 37.16 0.35 -0.73 16 2 C 0.13 1.01 2.73 -67.93 -0.19 0.83 16 3 H 0.10 0.89 7.58 -51.93 -0.39 0.50 16 4 C 0.11 1.05 5.23 -4.04 -0.02 1.03 16 5 N -0.74 -8.53 5.39 -60.29 -0.32 -8.86 16 6 C 0.53 9.09 7.85 -10.99 -0.09 9.00 16 7 O -0.51 -10.88 15.86 5.55 0.09 -10.79 16 8 C -0.15 -2.94 6.16 36.01 0.22 -2.71 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.54 -14.92 9.50 30.94 0.29 -14.63 16 11 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 12 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 13 N -0.87 -25.70 13.22 55.49 0.73 -24.96 16 14 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 N -0.73 -4.99 4.51 -55.12 -0.25 -5.24 16 19 C 0.59 5.48 7.75 -12.86 -0.10 5.38 16 20 O -0.52 -6.65 16.54 5.19 0.09 -6.56 16 21 C -0.04 -0.35 7.05 -81.98 -0.58 -0.93 16 22 C -0.09 -0.81 10.65 -39.09 -0.42 -1.23 16 23 C -0.13 -1.03 6.66 -39.94 -0.27 -1.29 16 24 Cl -0.05 -0.36 29.30 -51.86 -1.52 -1.88 16 25 C 0.05 0.27 11.87 -16.84 -0.20 0.07 16 26 N -0.53 -2.80 6.00 -9.35 -0.06 -2.86 16 27 H 0.42 1.08 8.19 -40.82 -0.33 0.75 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.40 3.84 8.14 -40.82 -0.33 3.51 16 34 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 35 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.40 1.96 7.73 -40.82 -0.32 1.64 16 38 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.18 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -36.17 373.56 -8.65 -44.82 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.72 Total: 1.71 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -1.08 Total: -3.26 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.10 Total: -41.92 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.17 Total: -17.35 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.52 Total: -1.88 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.17 -8.65 -44.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579327885.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.036 kcal (2) G-P(sol) polarization free energy of solvation -36.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds