Wall clock time and date at job start Wed Apr 1 2020 02:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47490 * 2 1 4 4 C 1.52995 * 109.46748 * 239.99793 * 2 1 3 5 5 N 1.46500 * 109.47361 * 185.00030 * 4 2 1 6 6 C 1.34776 * 120.00431 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99998 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00161 * 179.97438 * 6 5 4 9 9 S 1.80998 * 109.47126 * 180.02562 * 8 6 5 10 10 C 1.76199 * 100.00204 * 180.02562 * 9 8 6 11 11 H 1.08003 * 119.99630 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00264 * 180.02562 * 10 9 8 13 13 N 1.31629 * 119.99790 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99762 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47402 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.46802 * 120.00402 * 14 12 10 17 17 H 1.48506 * 109.47000 * 239.99767 * 14 12 10 18 18 N 1.46505 * 109.47125 * 120.00141 * 2 1 3 19 19 C 1.34773 * 120.00095 * 274.99839 * 18 2 1 20 20 O 1.21703 * 119.99823 * 359.97438 * 19 18 2 21 21 C 1.46660 * 120.00151 * 179.72491 * 19 18 2 22 22 C 1.37896 * 126.22489 * 180.27247 * 21 19 18 23 23 C 1.39884 * 107.09700 * 180.02562 * 22 21 19 24 24 Cl 1.73604 * 126.07616 * 179.97438 * 23 22 21 25 25 C 1.35520 * 107.85517 * 359.97438 * 23 22 21 26 26 N 1.35636 * 108.84710 * 359.73355 * 25 23 22 27 27 H 0.96998 * 125.67632 * 180.29514 * 26 25 23 28 28 H 1.08995 * 109.47220 * 59.99547 * 1 2 3 29 29 H 1.08998 * 109.47796 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46874 * 299.99999 * 1 2 3 31 31 H 1.09005 * 109.47349 * 305.00113 * 4 2 1 32 32 H 1.09002 * 109.47351 * 65.00284 * 4 2 1 33 33 H 0.96998 * 119.99598 * 0.02562 * 5 4 2 34 34 H 1.08997 * 109.47510 * 300.00693 * 8 6 5 35 35 H 1.08994 * 109.46713 * 60.00689 * 8 6 5 36 36 H 0.97003 * 119.99792 * 179.97438 * 13 12 10 37 37 H 0.97000 * 119.99792 * 94.99404 * 18 2 1 38 38 H 1.07998 * 126.45486 * 0.02562 * 22 21 19 39 39 H 1.07997 * 125.58083 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.4999 -0.8265 -1.1907 6 6 4.1728 -1.4293 -2.1908 7 8 3.5697 -1.8844 -3.1395 8 6 5.6748 -1.5370 -2.1308 9 16 6.2780 -2.3905 -3.6085 10 6 8.0098 -2.3777 -3.2838 11 1 8.3860 -1.9251 -2.3783 12 6 8.8904 -2.9492 -4.1918 13 7 8.4318 -3.5003 -5.2957 14 14 10.7262 -2.9362 -3.8471 15 1 10.9815 -2.2609 -2.5494 16 1 11.2283 -4.3325 -3.7864 17 1 11.4284 -2.2044 -4.9319 18 7 2.0183 -0.6907 1.1962 19 6 2.1471 -0.0184 2.3571 20 8 1.8581 1.1626 2.4117 21 6 2.6302 -0.7112 3.5561 22 6 2.8048 -0.1533 4.8050 23 6 3.2794 -1.1660 5.6452 24 17 3.6663 -0.9995 7.3293 25 6 3.3836 -2.3003 4.9109 26 7 2.9859 -2.0382 3.6409 27 1 2.9591 -2.6787 2.9130 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6052 -1.7199 -1.2951 32 1 1.7515 -0.1584 -2.1370 33 1 3.9823 -0.4629 -0.4317 34 1 6.1092 -0.5384 -2.0855 35 1 5.9635 -2.0993 -1.2428 36 1 9.0473 -3.8995 -5.9304 37 1 2.2489 -1.6318 1.1526 38 1 2.6116 0.8725 5.0823 39 1 3.7236 -3.2574 5.2779 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579327885.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:00 Heat of formation + Delta-G solvation = -67.772433 kcal Electronic energy + Delta-G solvation = -24193.294783 eV Core-core repulsion = 20287.474481 eV Total energy + Delta-G solvation = -3905.820302 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.45081 -40.92762 -40.18607 -37.51878 -37.33621 -34.92469 -34.58674 -32.77138 -31.89013 -30.91638 -29.96677 -27.74814 -26.85956 -24.58180 -22.41830 -21.77709 -21.55428 -21.31333 -20.29474 -19.77106 -17.87863 -17.64207 -17.44126 -16.88652 -16.66974 -16.46412 -16.30090 -15.83860 -15.56942 -15.15266 -14.93514 -14.86441 -14.56406 -14.43574 -14.17670 -13.91061 -13.85022 -13.66477 -13.27279 -13.16500 -12.99347 -12.91968 -12.80561 -12.59955 -12.10463 -11.81964 -11.71468 -11.33936 -11.16510 -11.01541 -10.39658 -10.27920 -10.19287 -9.94572 -9.31153 -8.66679 -8.35714 -6.13090 0.27969 1.22555 1.26355 1.40740 1.41562 1.46478 1.57245 1.58230 1.84592 2.17229 2.20824 2.26188 2.30851 2.98835 3.30815 3.50224 3.75396 3.93730 4.02751 4.06592 4.17560 4.22004 4.28401 4.49530 4.50302 4.57067 4.67245 4.74962 4.85355 4.94565 5.21468 5.28785 5.32832 5.37649 5.41828 5.52255 6.19340 6.23078 6.39531 6.41526 7.00176 7.06362 7.18323 8.73508 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.009837 B = 0.002331 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.710435 B =12010.904862 C =14391.302358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.090 0.910 4 C 0.115 3.885 5 N -0.714 5.714 6 C 0.538 3.462 7 O -0.560 6.560 8 C -0.132 4.132 9 S -0.147 6.147 10 C -0.545 4.545 11 H 0.081 0.919 12 C 0.014 3.986 13 N -0.910 5.910 14 Si 0.997 3.003 15 H -0.258 1.258 16 H -0.273 1.273 17 H -0.276 1.276 18 N -0.713 5.713 19 C 0.596 3.404 20 O -0.562 6.562 21 C -0.055 4.055 22 C -0.109 4.109 23 C -0.151 4.151 24 Cl -0.051 7.051 25 C 0.068 3.932 26 N -0.513 5.513 27 H 0.440 0.560 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.412 0.588 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.271 0.729 37 H 0.409 0.591 38 H 0.146 0.854 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.312 3.060 23.159 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 H 0.108 0.892 4 C -0.009 4.009 5 N -0.369 5.369 6 C 0.323 3.677 7 O -0.438 6.438 8 C -0.283 4.283 9 S 0.080 5.920 10 C -0.693 4.693 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.819 3.181 15 H -0.181 1.181 16 H -0.199 1.199 17 H -0.201 1.201 18 N -0.366 5.366 19 C 0.384 3.616 20 O -0.440 6.440 21 C -0.168 4.168 22 C -0.136 4.136 23 C -0.184 4.184 24 Cl -0.023 7.023 25 C -0.071 4.071 26 N -0.111 5.111 27 H 0.282 0.718 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.248 0.752 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.246 0.754 38 H 0.164 0.836 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -15.518 3.010 21.408 26.612 hybrid contribution 2.033 0.056 1.108 2.316 sum -13.484 3.065 22.516 26.423 Atomic orbital electron populations 1.22072 0.92622 1.03546 1.03294 1.21170 0.95822 0.97143 0.81990 0.89214 1.21758 0.79277 1.02038 0.97808 1.45734 1.07781 1.59946 1.23411 1.19967 0.88712 0.76970 0.82016 1.90712 1.70295 1.48362 1.34386 1.23381 0.94941 1.05645 1.04357 1.85545 1.05685 1.74857 1.25887 1.23222 0.91816 1.44248 1.10019 0.90048 1.26093 1.05066 0.93872 0.94060 1.70179 1.37285 1.36626 1.10587 0.84934 0.76110 0.78305 0.78783 1.18122 1.19857 1.20106 1.45861 1.67307 1.14394 1.09003 1.17031 0.76817 0.85712 0.82020 1.90865 1.51860 1.16390 1.84907 1.20064 1.15591 0.85481 0.95703 1.21254 1.01865 0.99828 0.90690 1.20114 1.14722 0.96138 0.87418 1.98336 1.93311 1.97950 1.12668 1.22317 1.01532 1.00312 0.82980 1.41901 1.49136 1.08794 1.11264 0.71815 0.89875 0.90814 0.92514 0.90040 0.89954 0.75202 0.87738 0.87033 0.91995 0.75423 0.83615 0.76759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.48 71.98 0.68 -1.14 16 2 C 0.14 1.91 2.73 44.99 0.12 2.03 16 3 H 0.09 1.48 7.58 -2.39 -0.02 1.46 16 4 C 0.12 1.90 5.23 86.38 0.45 2.35 16 5 N -0.71 -14.78 5.39 -463.06 -2.49 -17.27 16 6 C 0.54 17.60 7.85 87.66 0.69 18.28 16 7 O -0.56 -23.53 15.86 -3.04 -0.05 -23.57 16 8 C -0.13 -4.85 6.16 71.24 0.44 -4.41 16 9 S -0.15 -7.82 20.57 -56.49 -1.16 -8.98 16 10 C -0.55 -30.24 9.50 67.95 0.65 -29.60 16 11 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 12 C 0.01 0.78 5.49 84.86 0.47 1.24 16 13 N -0.91 -54.73 13.22 21.65 0.29 -54.44 16 14 Si 1.00 42.68 29.55 68.60 2.03 44.71 16 15 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 16 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 17 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 18 N -0.71 -8.29 4.51 -446.52 -2.02 -10.30 16 19 C 0.60 10.33 7.75 86.44 0.67 11.00 16 20 O -0.56 -14.28 16.54 -4.36 -0.07 -14.35 16 21 C -0.05 -0.82 7.05 40.35 0.28 -0.53 16 22 C -0.11 -1.91 10.65 22.59 0.24 -1.67 16 23 C -0.15 -2.21 6.66 22.04 0.15 -2.06 16 24 Cl -0.05 -0.77 29.30 -2.72 -0.08 -0.85 16 25 C 0.07 0.59 11.87 83.48 0.99 1.58 16 26 N -0.51 -4.01 6.00 -183.50 -1.10 -5.11 16 27 H 0.44 0.69 8.19 -92.71 -0.76 -0.07 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.41 6.70 8.14 -92.71 -0.75 5.95 16 34 H 0.10 3.55 8.14 -2.40 -0.02 3.53 16 35 H 0.11 3.58 8.14 -2.40 -0.02 3.56 16 36 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.41 2.80 7.73 -92.71 -0.72 2.09 16 38 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 39 H 0.22 0.39 8.06 -2.91 -0.02 0.36 16 Total: -1.00 -80.96 373.56 0.07 -80.90 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -1.10 Total: 12.18 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 5.83 Total: -2.91 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -5.32 Total: -87.13 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -0.12 Total: -37.92 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: -7.82 SS G_CDS: -1.16 Total: -8.98 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -80.96 0.07 -80.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579327885.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.125 kcal (2) G-P(sol) polarization free energy of solvation -80.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds