Wall clock time and date at job start Wed Apr 1 2020 03:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37838 * 119.94149 * 2 1 4 4 C 1.39683 * 119.87615 * 180.27100 * 3 2 1 5 5 C 1.47596 * 120.12457 * 179.76130 * 4 3 2 6 6 O 1.21485 * 120.00171 * 179.97438 * 5 4 3 7 7 O 1.34732 * 119.99899 * 359.97438 * 5 4 3 8 8 C 1.39725 * 119.75295 * 359.74244 * 4 3 2 9 9 C 1.37798 * 119.87393 * 359.97438 * 8 4 3 10 10 S 1.76201 * 119.93582 * 179.97438 * 9 8 4 11 11 O 1.42108 * 106.40041 * 228.56663 * 10 9 8 12 12 O 1.42098 * 106.40463 * 1.48412 * 10 9 8 13 13 N 1.65595 * 107.21606 * 115.02570 * 10 9 8 14 14 C 1.46503 * 119.99990 * 65.00242 * 13 10 9 15 15 C 1.53003 * 109.46949 * 164.99725 * 14 13 10 16 16 C 1.52995 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47625 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99497 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00520 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99992 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00302 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.46958 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47278 * 119.99765 * 21 19 17 24 24 H 1.48493 * 109.47431 * 240.00161 * 21 19 17 25 25 C 1.38649 * 119.93750 * 179.75624 * 2 1 3 26 26 F 1.35104 * 119.87326 * 0.02562 * 25 2 1 27 27 H 1.08991 * 109.47648 * 270.24369 * 1 2 3 28 28 H 1.09006 * 109.46787 * 30.24445 * 1 2 3 29 29 H 1.09003 * 109.47091 * 150.23956 * 1 2 3 30 30 H 1.08002 * 120.06402 * 0.03071 * 3 2 1 31 31 H 0.96704 * 117.00005 * 180.02562 * 7 5 4 32 32 H 1.08007 * 120.06271 * 179.97438 * 8 4 3 33 33 H 0.96995 * 120.00068 * 244.99379 * 13 10 9 34 34 H 1.08996 * 109.46838 * 284.99206 * 14 13 10 35 35 H 1.08997 * 109.46984 * 44.99709 * 14 13 10 36 36 H 1.08993 * 109.47397 * 299.99634 * 15 14 13 37 37 H 1.09003 * 109.46878 * 60.00053 * 15 14 13 38 38 H 1.09002 * 109.47400 * 300.00503 * 16 15 14 39 39 H 1.09004 * 109.47083 * 60.00148 * 16 15 14 40 40 H 0.96998 * 120.00351 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1944 0.0000 4 6 3.5918 1.1928 -0.0057 5 6 4.3340 2.4686 -0.0111 6 8 5.5488 2.4646 -0.0156 7 8 3.6641 3.6376 -0.0110 8 6 4.2838 -0.0210 -0.0060 9 6 3.5857 -1.2091 0.0000 10 16 4.4568 -2.7407 -0.0010 11 8 3.8659 -3.5376 -1.0185 12 8 5.8398 -2.4159 0.0268 13 7 4.1244 -3.4945 1.4355 14 6 2.7585 -3.9317 1.7344 15 6 2.7817 -4.9073 2.9129 16 6 1.3552 -5.3634 3.2255 17 6 1.3780 -6.3248 4.3858 18 1 2.3162 -6.5841 4.8537 19 6 0.2013 -6.8732 4.8500 20 7 -0.9411 -6.5578 4.2798 21 14 0.2296 -8.0643 6.2887 22 1 1.6291 -8.2518 6.7486 23 1 -0.5873 -7.5163 7.4012 24 1 -0.3305 -9.3712 5.8605 25 6 2.1989 -1.2015 0.0051 26 9 1.5195 -2.3693 0.0096 27 1 -0.3634 0.0044 1.0275 28 1 -0.3633 0.8878 -0.5177 29 1 -0.3633 -0.8922 -0.5101 30 1 1.6550 2.1298 0.0005 31 1 4.1935 4.4469 -0.0150 32 1 5.3638 -0.0281 -0.0108 33 1 4.8341 -3.6466 2.0789 34 1 2.1480 -3.0661 1.9914 35 1 2.3363 -4.4277 0.8604 36 1 3.3922 -5.7729 2.6560 37 1 3.2039 -4.4113 3.7869 38 1 0.7449 -4.4976 3.4825 39 1 0.9325 -5.8593 2.3516 40 1 -1.7690 -6.9433 4.6066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600114959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:34 Heat of formation + Delta-G solvation = -195.967249 kcal Electronic energy + Delta-G solvation = -27992.290366 eV Core-core repulsion = 23620.281993 eV Total energy + Delta-G solvation = -4372.008373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.66439 -40.91822 -39.18892 -37.32779 -36.58441 -36.06571 -35.95420 -33.58355 -33.28033 -31.84963 -30.90812 -27.61880 -26.44241 -25.16291 -23.94478 -23.05502 -21.33593 -20.63655 -19.55597 -18.69273 -18.51155 -17.79732 -17.45362 -17.00794 -16.71941 -16.38802 -16.22388 -16.05954 -15.59098 -14.62644 -14.61485 -14.43718 -14.34033 -14.20224 -13.90533 -13.80907 -13.49161 -12.75572 -12.61014 -12.54513 -12.36115 -12.29659 -12.24284 -12.13871 -12.04613 -12.00564 -11.57259 -11.29679 -11.07050 -10.95760 -10.75247 -10.54642 -10.04324 -9.94637 -9.50072 -9.34710 -9.29985 -9.11169 -8.39298 -6.04233 -4.06712 -0.16938 0.18310 0.35649 1.80237 2.42661 2.76758 2.98331 3.28826 3.36674 3.40221 3.40534 3.53665 3.91187 4.17694 4.32613 4.37115 4.43020 4.60821 4.86961 5.01830 5.14296 5.26170 5.27509 5.28758 5.32046 5.44116 5.55903 5.59652 5.67408 5.85173 5.95303 6.03731 6.07495 6.53164 6.72519 6.91179 7.07854 7.36815 7.61086 7.73330 7.94760 8.36393 9.00024 9.57696 11.07084 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.002793 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.773018 B =10023.900259 C =10789.332415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.146 4.146 3 C 0.014 3.986 4 C -0.159 4.159 5 C 0.532 3.468 6 O -0.505 6.505 7 O -0.511 6.511 8 C 0.065 3.935 9 C -0.722 4.722 10 S 2.695 3.305 11 O -0.940 6.940 12 O -0.955 6.955 13 N -1.108 6.108 14 C 0.109 3.891 15 C -0.116 4.116 16 C 0.022 3.978 17 C -0.521 4.521 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.232 3.768 26 F -0.101 7.101 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.157 0.843 31 H 0.418 0.582 32 H 0.168 0.832 33 H 0.420 0.580 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.018 0.982 39 H 0.021 0.979 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.888 20.531 -10.204 23.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.147 4.147 3 C -0.004 4.004 4 C -0.162 4.162 5 C 0.376 3.624 6 O -0.394 6.394 7 O -0.324 6.324 8 C 0.045 3.955 9 C -0.805 4.805 10 S 2.780 3.220 11 O -0.930 6.930 12 O -0.945 6.945 13 N -0.870 5.870 14 C -0.016 4.016 15 C -0.155 4.155 16 C -0.016 4.016 17 C -0.559 4.559 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 C 0.211 3.789 26 F -0.078 7.078 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.175 0.825 31 H 0.278 0.722 32 H 0.185 0.815 33 H 0.256 0.744 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.039 0.961 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.117 19.848 -11.009 23.506 hybrid contribution -0.081 0.229 1.416 1.437 sum 6.036 20.077 -9.592 23.055 Atomic orbital electron populations 1.20840 0.88204 1.04371 1.04091 1.20077 0.98335 0.91152 1.05158 1.21518 0.92480 0.98352 0.88079 1.19084 0.93707 0.90782 1.12582 1.20532 0.85467 0.84032 0.72352 1.90946 1.14728 1.87972 1.45740 1.84524 1.45104 1.16902 1.85852 1.20905 1.01473 0.88325 0.84765 1.31251 1.04057 1.23012 1.22215 1.02075 0.73168 0.73069 0.73665 1.93644 1.78625 1.65573 1.55165 1.93595 1.29836 1.84560 1.86552 1.55480 1.18759 1.73964 1.38828 1.21842 0.79399 0.98930 1.01434 1.21871 1.02256 0.96885 0.94497 1.19075 0.89171 0.96390 0.96969 1.21246 0.93048 1.26065 1.15555 0.92548 1.25019 0.95620 0.96774 0.97046 1.69967 0.97834 1.44185 1.41359 0.86533 0.78077 0.80947 0.82409 1.19745 1.21051 1.20985 1.17260 0.88071 0.82221 0.91356 1.91705 1.79625 1.44836 1.91661 0.89649 0.90255 0.90090 0.82528 0.72233 0.81455 0.74387 0.92269 0.89946 0.92213 0.92547 0.96345 0.96085 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.83 36.01 0.35 -0.53 16 2 C -0.15 -1.38 5.88 -104.62 -0.62 -1.99 16 3 C 0.01 0.11 9.26 -39.19 -0.36 -0.25 16 4 C -0.16 -1.54 5.87 -104.98 -0.62 -2.15 16 5 C 0.53 4.87 8.27 34.55 0.29 5.15 16 6 O -0.51 -6.12 17.13 -19.25 -0.33 -6.45 16 7 O -0.51 -2.86 12.68 -40.58 -0.51 -3.37 16 8 C 0.06 0.72 9.09 -39.19 -0.36 0.36 16 9 C -0.72 -8.80 5.89 -39.58 -0.23 -9.03 16 10 S 2.70 37.14 5.48 -107.50 -0.59 36.55 16 11 O -0.94 -15.71 16.89 -57.17 -0.97 -16.68 16 12 O -0.96 -14.22 16.96 -57.17 -0.97 -15.19 16 13 N -1.11 -14.87 6.00 -10.61 -0.06 -14.93 16 14 C 0.11 1.74 4.56 -4.04 -0.02 1.72 16 15 C -0.12 -2.20 5.30 -26.73 -0.14 -2.35 16 16 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 17 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 18 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 21 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 25 C 0.23 2.79 6.75 -39.27 -0.27 2.53 16 26 F -0.10 -1.37 12.10 2.25 0.03 -1.35 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.08 0.66 7.63 -51.93 -0.40 0.26 16 30 H 0.16 0.81 7.61 -52.49 -0.40 0.41 16 31 H 0.42 0.52 9.11 45.56 0.42 0.94 16 32 H 0.17 1.83 6.91 -52.48 -0.36 1.47 16 33 H 0.42 4.80 8.65 -34.46 -0.30 4.50 16 34 H 0.06 0.89 6.74 -51.93 -0.35 0.54 16 35 H 0.08 1.38 7.24 -51.93 -0.38 1.01 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -35.73 360.34 -8.62 -44.35 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -3.84 Total: 0.13 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -2.52 Total: -19.25 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.67 Total: -40.41 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -2.78 Total: -41.69 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.03 Total: -1.35 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 37.14 SS G_CDS: -0.59 Total: 36.55 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.73 -8.62 -44.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600114959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.619 kcal (2) G-P(sol) polarization free energy of solvation -35.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds