Wall clock time and date at job start Wed Apr 1 2020 03:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37838 * 119.94149 * 2 1 4 4 C 1.39683 * 119.87615 * 180.27100 * 3 2 1 5 5 C 1.47596 * 120.12457 * 179.76130 * 4 3 2 6 6 O 1.21485 * 120.00171 * 179.97438 * 5 4 3 7 7 O 1.34732 * 119.99899 * 359.97438 * 5 4 3 8 8 C 1.39725 * 119.75295 * 359.74244 * 4 3 2 9 9 C 1.37798 * 119.87393 * 359.97438 * 8 4 3 10 10 S 1.76201 * 119.93582 * 179.97438 * 9 8 4 11 11 O 1.42108 * 106.40041 * 228.56663 * 10 9 8 12 12 O 1.42098 * 106.40463 * 1.48412 * 10 9 8 13 13 N 1.65595 * 107.21606 * 115.02570 * 10 9 8 14 14 C 1.46503 * 119.99990 * 65.00242 * 13 10 9 15 15 C 1.53003 * 109.46949 * 164.99725 * 14 13 10 16 16 C 1.52995 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47625 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99497 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00520 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99992 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00302 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.46958 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47278 * 119.99765 * 21 19 17 24 24 H 1.48493 * 109.47431 * 240.00161 * 21 19 17 25 25 C 1.38649 * 119.93750 * 179.75624 * 2 1 3 26 26 F 1.35104 * 119.87326 * 0.02562 * 25 2 1 27 27 H 1.08991 * 109.47648 * 270.24369 * 1 2 3 28 28 H 1.09006 * 109.46787 * 30.24445 * 1 2 3 29 29 H 1.09003 * 109.47091 * 150.23956 * 1 2 3 30 30 H 1.08002 * 120.06402 * 0.03071 * 3 2 1 31 31 H 0.96704 * 117.00005 * 180.02562 * 7 5 4 32 32 H 1.08007 * 120.06271 * 179.97438 * 8 4 3 33 33 H 0.96995 * 120.00068 * 244.99379 * 13 10 9 34 34 H 1.08996 * 109.46838 * 284.99206 * 14 13 10 35 35 H 1.08997 * 109.46984 * 44.99709 * 14 13 10 36 36 H 1.08993 * 109.47397 * 299.99634 * 15 14 13 37 37 H 1.09003 * 109.46878 * 60.00053 * 15 14 13 38 38 H 1.09002 * 109.47400 * 300.00503 * 16 15 14 39 39 H 1.09004 * 109.47083 * 60.00148 * 16 15 14 40 40 H 0.96998 * 120.00351 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1944 0.0000 4 6 3.5918 1.1928 -0.0057 5 6 4.3340 2.4686 -0.0111 6 8 5.5488 2.4646 -0.0156 7 8 3.6641 3.6376 -0.0110 8 6 4.2838 -0.0210 -0.0060 9 6 3.5857 -1.2091 0.0000 10 16 4.4568 -2.7407 -0.0010 11 8 3.8659 -3.5376 -1.0185 12 8 5.8398 -2.4159 0.0268 13 7 4.1244 -3.4945 1.4355 14 6 2.7585 -3.9317 1.7344 15 6 2.7817 -4.9073 2.9129 16 6 1.3552 -5.3634 3.2255 17 6 1.3780 -6.3248 4.3858 18 1 2.3162 -6.5841 4.8537 19 6 0.2013 -6.8732 4.8500 20 7 -0.9411 -6.5578 4.2798 21 14 0.2296 -8.0643 6.2887 22 1 1.6291 -8.2518 6.7486 23 1 -0.5873 -7.5163 7.4012 24 1 -0.3305 -9.3712 5.8605 25 6 2.1989 -1.2015 0.0051 26 9 1.5195 -2.3693 0.0096 27 1 -0.3634 0.0044 1.0275 28 1 -0.3633 0.8878 -0.5177 29 1 -0.3633 -0.8922 -0.5101 30 1 1.6550 2.1298 0.0005 31 1 4.1935 4.4469 -0.0150 32 1 5.3638 -0.0281 -0.0108 33 1 4.8341 -3.6466 2.0789 34 1 2.1480 -3.0661 1.9914 35 1 2.3363 -4.4277 0.8604 36 1 3.3922 -5.7729 2.6560 37 1 3.2039 -4.4113 3.7869 38 1 0.7449 -4.4976 3.4825 39 1 0.9325 -5.8593 2.3516 40 1 -1.7690 -6.9433 4.6066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600114959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:33 Heat of formation + Delta-G solvation = -222.701474 kcal Electronic energy + Delta-G solvation = -27993.449649 eV Core-core repulsion = 23620.281993 eV Total energy + Delta-G solvation = -4373.167656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.61445 -41.62818 -39.93504 -38.52750 -37.46955 -37.20737 -37.16632 -35.19543 -34.33040 -32.72648 -32.60785 -28.32206 -28.22561 -25.90454 -24.89993 -24.70119 -22.31546 -22.00316 -20.64093 -19.58740 -19.31092 -18.75825 -18.55874 -18.34968 -17.90956 -17.57930 -17.16618 -16.84726 -16.69467 -16.46717 -16.05254 -15.74507 -15.21021 -15.01114 -14.66876 -14.53743 -14.31070 -14.19282 -14.00220 -13.80905 -13.46718 -13.38920 -13.33126 -13.31365 -13.26249 -12.99414 -12.81550 -12.65868 -12.51926 -12.27787 -12.17095 -11.87563 -11.70908 -11.40679 -11.14296 -10.81959 -10.56172 -10.52194 -10.11218 -8.17587 -6.27646 -1.01096 -0.84271 -0.49933 1.06030 1.41887 1.43060 1.55359 1.75165 1.80881 2.13049 2.41927 2.43297 2.60475 3.04255 3.16321 3.33724 3.58876 3.63079 3.78026 3.96804 4.11505 4.20437 4.30743 4.41220 4.43876 4.51320 4.63753 4.71693 4.76757 4.94646 4.94868 5.04699 5.16346 5.21342 5.35378 5.46102 5.55339 5.75883 5.87913 5.97804 6.26915 6.85251 6.89211 7.41324 8.94347 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.002793 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.773018 B =10023.900259 C =10789.332415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.141 4.141 3 C 0.035 3.965 4 C -0.161 4.161 5 C 0.542 3.458 6 O -0.540 6.540 7 O -0.495 6.495 8 C 0.054 3.946 9 C -0.725 4.725 10 S 2.711 3.289 11 O -0.974 6.974 12 O -0.968 6.968 13 N -1.102 6.102 14 C 0.120 3.880 15 C -0.105 4.105 16 C 0.023 3.977 17 C -0.541 4.541 18 H 0.061 0.939 19 C 0.000 4.000 20 N -0.931 5.931 21 Si 0.962 3.038 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.281 1.281 25 C 0.205 3.795 26 F -0.117 7.117 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.196 0.804 31 H 0.439 0.561 32 H 0.165 0.835 33 H 0.430 0.570 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.001 0.999 39 H -0.005 1.005 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.779 22.552 -9.499 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.143 4.143 3 C 0.017 3.983 4 C -0.163 4.163 5 C 0.387 3.613 6 O -0.432 6.432 7 O -0.310 6.310 8 C 0.035 3.965 9 C -0.812 4.812 10 S 2.799 3.201 11 O -0.964 6.964 12 O -0.958 6.958 13 N -0.865 5.865 14 C -0.006 4.006 15 C -0.144 4.144 16 C -0.015 4.015 17 C -0.579 4.579 18 H 0.080 0.920 19 C -0.198 4.198 20 N -0.571 5.571 21 Si 0.787 3.213 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.207 1.207 25 C 0.184 3.816 26 F -0.095 7.095 27 H 0.108 0.892 28 H 0.129 0.871 29 H 0.088 0.912 30 H 0.213 0.787 31 H 0.303 0.697 32 H 0.182 0.818 33 H 0.268 0.732 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.020 0.980 39 H 0.013 0.987 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.041 21.866 -10.297 24.912 hybrid contribution -0.086 -0.234 1.158 1.184 sum 5.955 21.631 -9.139 24.226 Atomic orbital electron populations 1.20952 0.86665 1.05393 1.04689 1.20378 0.99443 0.90522 1.03921 1.21906 0.91723 0.99217 0.85429 1.19230 0.94533 0.90624 1.11912 1.20354 0.84781 0.84674 0.71485 1.90945 1.16220 1.88511 1.47504 1.84467 1.44824 1.16829 1.84835 1.20943 1.01489 0.88773 0.85317 1.30794 1.04170 1.22096 1.24152 1.01265 0.72664 0.73173 0.72950 1.93601 1.79125 1.67248 1.56461 1.93572 1.30758 1.84873 1.86611 1.55238 1.18004 1.74337 1.38965 1.21554 0.80732 0.98605 0.99733 1.21650 0.98711 0.97792 0.96273 1.18974 0.92165 0.95138 0.95213 1.21710 0.93353 1.26519 1.16296 0.92036 1.25929 0.95286 0.98636 0.99910 1.70090 0.98533 1.45507 1.43011 0.85443 0.78531 0.78424 0.78898 1.18666 1.20403 1.20669 1.17592 0.88158 0.82720 0.93112 1.91662 1.79859 1.45920 1.92083 0.89172 0.87111 0.91249 0.78698 0.69732 0.81803 0.73196 0.91217 0.91058 0.92023 0.91188 0.98031 0.98669 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 9.83 71.24 0.70 -0.83 16 2 C -0.14 -2.39 5.88 -19.86 -0.12 -2.51 16 3 C 0.04 0.45 9.26 22.52 0.21 0.66 16 4 C -0.16 -2.76 5.87 -20.10 -0.12 -2.88 16 5 C 0.54 8.62 8.27 70.29 0.58 9.20 16 6 O -0.54 -12.39 17.13 19.88 0.34 -12.05 16 7 O -0.50 -3.67 12.68 -56.42 -0.72 -4.38 16 8 C 0.05 1.17 9.09 22.53 0.20 1.38 16 9 C -0.73 -17.66 5.89 22.27 0.13 -17.53 16 10 S 2.71 76.33 5.48 -56.49 -0.31 76.02 16 11 O -0.97 -33.75 16.89 -128.00 -2.16 -35.91 16 12 O -0.97 -29.17 16.96 -128.00 -2.17 -31.34 16 13 N -1.10 -29.72 6.00 -187.49 -1.12 -30.84 16 14 C 0.12 3.88 4.56 86.38 0.39 4.28 16 15 C -0.11 -4.02 5.30 30.59 0.16 -3.86 16 16 C 0.02 1.17 4.97 29.85 0.15 1.31 16 17 C -0.54 -29.89 9.11 25.60 0.23 -29.65 16 18 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 19 C 0.00 0.01 5.46 84.65 0.46 0.48 16 20 N -0.93 -55.44 13.29 21.45 0.28 -55.15 16 21 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 25 C 0.21 4.87 6.75 22.47 0.15 5.03 16 26 F -0.12 -3.30 12.10 44.97 0.54 -2.75 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.11 0.70 8.09 -2.38 -0.02 0.68 16 29 H 0.07 1.07 7.63 -2.39 -0.02 1.05 16 30 H 0.20 0.98 7.61 -2.91 -0.02 0.96 16 31 H 0.44 -0.52 9.11 -74.05 -0.67 -1.19 16 32 H 0.16 3.61 6.91 -2.91 -0.02 3.59 16 33 H 0.43 9.66 8.65 -96.75 -0.84 8.82 16 34 H 0.07 2.12 6.74 -2.39 -0.02 2.11 16 35 H 0.07 2.49 7.24 -2.39 -0.02 2.47 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 39 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 40 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -78.01 360.34 -0.54 -78.54 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -0.39 Total: 7.26 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 3.14 Total: -34.92 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -0.84 Total: -86.00 kcal Atomic # 8 Polarization: -78.98 SS G_CDS: -4.71 Total: -83.69 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.54 Total: -2.75 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 76.33 SS G_CDS: -0.31 Total: 76.02 kcal Total: -78.01 -0.54 -78.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600114959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.157 kcal (2) G-P(sol) polarization free energy of solvation -78.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds