Wall clock time and date at job start Wed Apr 1 2020 03:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38217 * 120.01036 * 2 1 4 4 C 1.38229 * 120.02357 * 179.72012 * 3 2 1 5 5 C 1.50701 * 119.97490 * 180.25719 * 4 3 2 6 6 C 1.38268 * 120.04770 * 0.51831 * 4 3 2 7 7 S 1.76196 * 119.98467 * 179.76652 * 6 4 3 8 8 O 1.42106 * 106.40209 * 342.07852 * 7 6 4 9 9 O 1.42100 * 106.40586 * 209.16010 * 7 6 4 10 10 N 1.65602 * 107.22081 * 95.61810 * 7 6 4 11 11 C 1.36939 * 119.99768 * 90.00066 * 10 7 6 12 12 H 1.07997 * 120.00153 * 323.11584 * 11 10 7 13 13 C 1.38812 * 119.99839 * 143.12058 * 11 10 7 14 14 N 1.31615 * 119.99982 * 346.57690 * 13 11 10 15 15 Si 1.86799 * 119.99822 * 166.58061 * 13 11 10 16 16 H 1.48494 * 109.47550 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47289 * 120.00133 * 15 13 11 18 18 H 1.48505 * 109.47214 * 239.99573 * 15 13 11 19 19 C 1.46501 * 120.00157 * 270.00073 * 10 7 6 20 20 C 1.50700 * 109.47251 * 95.16903 * 19 10 7 21 21 O 1.20822 * 119.99642 * 359.97438 * 20 19 10 22 22 O 1.34226 * 119.99962 * 180.02562 * 20 19 10 23 23 C 1.38173 * 120.02760 * 359.48496 * 6 4 3 24 24 C 1.50697 * 120.01423 * 180.28025 * 23 6 4 25 25 C 1.38440 * 120.01274 * 179.97438 * 2 1 3 26 26 F 1.35096 * 120.02288 * 0.02562 * 25 2 1 27 27 H 1.08999 * 109.47368 * 270.01748 * 1 2 3 28 28 H 1.09006 * 109.47266 * 30.02212 * 1 2 3 29 29 H 1.09003 * 109.46899 * 150.01627 * 1 2 3 30 30 H 1.08002 * 119.98822 * 359.97438 * 3 2 1 31 31 H 1.08994 * 109.47235 * 263.39457 * 5 4 3 32 32 H 1.09002 * 109.46815 * 23.39765 * 5 4 3 33 33 H 1.08999 * 109.46871 * 143.39495 * 5 4 3 34 34 H 0.97004 * 120.00107 * 179.97438 * 14 13 11 35 35 H 1.08996 * 109.47247 * 215.17073 * 19 10 7 36 36 H 1.09005 * 109.46758 * 335.16975 * 19 10 7 37 37 H 0.96706 * 116.99940 * 179.97438 * 22 20 19 38 38 H 1.09006 * 109.47576 * 81.08524 * 24 23 6 39 39 H 1.08994 * 109.47242 * 201.08300 * 24 23 6 40 40 H 1.09001 * 109.47111 * 321.08960 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5806 1.1972 0.0058 5 6 4.3332 2.5028 0.0117 6 6 4.2732 0.0005 0.0009 7 16 6.0352 0.0029 0.0021 8 8 6.4350 1.3024 -0.4112 9 8 6.4386 -1.1839 -0.6672 10 7 6.5246 -0.1585 1.5759 11 6 6.7286 -1.4049 2.1051 12 1 6.0819 -2.2231 1.8247 13 6 7.7667 -1.6167 3.0020 14 7 8.7084 -0.7084 3.1451 15 14 7.8270 -3.1909 4.0058 16 1 6.6600 -4.0423 3.6622 17 1 9.0820 -3.9242 3.7016 18 1 7.7870 -2.8574 5.4524 19 6 6.7392 1.0322 2.4021 20 6 5.4939 1.3213 3.1999 21 8 4.5262 0.6063 3.0894 22 8 5.4594 2.3735 4.0325 23 6 3.5843 -1.1972 0.0008 24 6 4.3395 -2.5012 0.0018 25 6 2.1995 -1.1988 0.0005 26 9 1.5247 -2.3692 0.0005 27 1 -0.3634 0.0003 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5136 30 1 1.6583 2.1322 -0.0004 31 1 4.6214 2.7606 -1.0073 32 1 3.6958 3.2878 0.4187 33 1 5.2268 2.4043 0.6281 34 1 9.4336 -0.8562 3.7721 35 1 7.5735 0.8575 3.0814 36 1 6.9654 1.8838 1.7602 37 1 4.6386 2.5188 4.5227 38 1 4.6587 -2.7356 1.0173 39 1 3.6921 -3.2963 -0.3681 40 1 5.2140 -2.4151 -0.6431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600163926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:54 Heat of formation + Delta-G solvation = -163.741299 kcal Electronic energy + Delta-G solvation = -30696.352970 eV Core-core repulsion = 26325.742019 eV Total energy + Delta-G solvation = -4370.610951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -48.64917 -39.45244 -39.17552 -36.75191 -35.96445 -35.08670 -34.94320 -33.59755 -32.79445 -31.51049 -27.90169 -27.73968 -26.83628 -26.20546 -24.26637 -21.46529 -21.01150 -20.69412 -18.89517 -18.06691 -17.40537 -17.04553 -16.91725 -16.72097 -15.63350 -15.51576 -15.06678 -14.86475 -14.70056 -14.46717 -14.39255 -13.59638 -13.57102 -13.37688 -13.29280 -13.10775 -12.86031 -12.75950 -12.56187 -12.11166 -12.06437 -11.94550 -11.80626 -11.46877 -11.36222 -11.16077 -11.12027 -11.01838 -10.89786 -10.74368 -10.57515 -10.29697 -10.14923 -9.83020 -9.75900 -9.28275 -8.73661 -8.15764 -7.98111 -6.38498 -4.19802 0.94969 1.34344 1.42124 3.03461 3.14499 3.23409 3.27943 3.45717 3.64030 4.10871 4.33030 4.46216 4.54285 4.70756 4.75855 4.95264 5.01210 5.18480 5.39491 5.46849 5.49250 5.61145 5.74340 5.82075 5.90606 5.93255 5.99020 6.05121 6.10236 6.24242 6.32249 6.43198 6.48165 6.57535 6.71117 6.92409 7.07807 7.14946 7.21335 7.54907 8.22658 8.67879 8.78278 9.18955 10.62818 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.005967 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.236471 B = 4691.312177 C = 5288.353008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.067 4.067 3 C -0.134 4.134 4 C 0.020 3.980 5 C -0.135 4.135 6 C -0.644 4.644 7 S 2.658 3.342 8 O -0.984 6.984 9 O -0.953 6.953 10 N -0.821 5.821 11 C -0.288 4.288 12 H 0.099 0.901 13 C 0.037 3.963 14 N -0.873 5.873 15 Si 0.922 3.078 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.281 1.281 19 C 0.111 3.889 20 C 0.447 3.553 21 O -0.506 6.506 22 O -0.528 6.528 23 C 0.017 3.983 24 C -0.190 4.190 25 C 0.054 3.946 26 F -0.140 7.140 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.131 0.869 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.272 0.728 35 H 0.170 0.830 36 H 0.104 0.896 37 H 0.392 0.608 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.843 5.019 -1.974 11.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.068 4.068 3 C -0.153 4.153 4 C 0.018 3.982 5 C -0.191 4.191 6 C -0.728 4.728 7 S 2.754 3.246 8 O -0.974 6.974 9 O -0.943 6.943 10 N -0.650 5.650 11 C -0.420 4.420 12 H 0.117 0.883 13 C -0.168 4.168 14 N -0.513 5.513 15 Si 0.748 3.252 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.207 1.207 19 C -0.018 4.018 20 C 0.287 3.713 21 O -0.392 6.392 22 O -0.339 6.339 23 C 0.014 3.986 24 C -0.245 4.245 25 C 0.034 3.966 26 F -0.119 7.119 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.149 0.851 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.186 0.814 36 H 0.121 0.879 37 H 0.249 0.751 38 H 0.115 0.885 39 H 0.087 0.913 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.134 4.813 -2.959 10.740 hybrid contribution -1.652 -0.865 1.432 2.351 sum -10.786 3.949 -1.527 11.587 Atomic orbital electron populations 1.20784 0.90291 1.03223 1.02940 1.20016 0.96618 0.92127 0.98021 1.20733 0.93355 0.96828 1.04337 1.19578 0.93802 0.93969 0.90847 1.21346 1.00272 0.92666 1.04844 1.30814 1.28493 0.96973 1.16544 1.03531 0.73485 0.72917 0.74674 1.93472 1.81246 1.40607 1.82049 1.93284 1.80191 1.47441 1.73408 1.52332 1.78870 1.09975 1.23859 1.19343 1.11708 0.85427 1.25555 0.88340 1.25386 0.93607 0.98604 0.99189 1.69552 1.10902 1.34568 1.36319 0.85940 0.78658 0.81407 0.79209 1.19079 1.20368 1.20653 1.21319 0.94732 0.88767 0.96999 1.25430 0.91518 0.76574 0.77775 1.90660 1.37147 1.47333 1.64060 1.84633 1.44620 1.49127 1.55508 1.19536 0.91763 0.95627 0.91625 1.22119 1.03485 0.92214 1.06726 1.17318 0.89634 0.80908 1.08748 1.91419 1.80043 1.45980 1.94413 0.90511 0.90887 0.91082 0.85079 0.89136 0.91779 0.89150 0.91764 0.81444 0.87851 0.75112 0.88518 0.91339 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 9.84 36.01 0.35 -0.98 16 2 C -0.07 -1.04 5.89 -104.55 -0.62 -1.66 16 3 C -0.13 -2.06 9.33 -39.59 -0.37 -2.43 16 4 C 0.02 0.35 5.88 -104.61 -0.62 -0.27 16 5 C -0.13 -2.15 8.32 36.01 0.30 -1.86 16 6 C -0.64 -12.94 5.65 -39.59 -0.22 -13.17 16 7 S 2.66 58.62 5.07 -107.50 -0.55 58.07 16 8 O -0.98 -21.38 12.56 -57.17 -0.72 -22.10 16 9 O -0.95 -22.58 13.40 -57.17 -0.77 -23.34 16 10 N -0.82 -19.05 2.36 -61.09 -0.14 -19.19 16 11 C -0.29 -7.12 8.80 -15.06 -0.13 -7.25 16 12 H 0.10 2.39 5.05 -52.49 -0.27 2.12 16 13 C 0.04 0.91 5.19 -17.43 -0.09 0.82 16 14 N -0.87 -21.67 10.89 55.49 0.60 -21.07 16 15 Si 0.92 19.68 29.57 -169.99 -5.03 14.65 16 16 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 17 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 C 0.11 2.37 5.39 -5.19 -0.03 2.35 16 20 C 0.45 8.83 8.01 36.01 0.29 9.12 16 21 O -0.51 -11.03 16.77 -18.75 -0.31 -11.35 16 22 O -0.53 -8.38 13.42 -39.25 -0.53 -8.91 16 23 C 0.02 0.33 5.88 -104.56 -0.61 -0.29 16 24 C -0.19 -3.67 8.77 36.00 0.32 -3.36 16 25 C 0.05 0.97 7.18 -39.42 -0.28 0.69 16 26 F -0.14 -2.42 15.55 2.25 0.04 -2.39 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.07 0.79 7.64 -51.93 -0.40 0.40 16 30 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.09 1.38 7.87 -51.93 -0.41 0.97 16 32 H 0.06 0.82 8.04 -51.93 -0.42 0.41 16 33 H 0.09 1.59 4.26 -51.93 -0.22 1.37 16 34 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 35 H 0.17 3.84 5.10 -51.93 -0.27 3.57 16 36 H 0.10 2.02 6.25 -51.93 -0.32 1.69 16 37 H 0.39 4.42 9.10 45.56 0.41 4.83 16 38 H 0.10 1.94 5.80 -51.93 -0.30 1.64 16 39 H 0.07 1.16 7.40 -51.93 -0.38 0.78 16 40 H 0.14 2.92 4.58 -53.02 -0.24 2.68 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -29.59 338.76 -7.23 -36.81 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -3.21 Total: 11.99 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -1.71 Total: -18.28 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.46 Total: -40.26 kcal Atomic # 8 Polarization: -63.37 SS G_CDS: -2.33 Total: -65.70 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Atomic # 16 Polarization: 58.62 SS G_CDS: -0.55 Total: 58.07 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.59 -7.23 -36.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600163926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.928 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds