Wall clock time and date at job start Wed Apr 1 2020 03:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00147 * 2 1 4 4 H 1.48507 * 109.46909 * 269.99704 * 3 2 1 5 5 H 1.48500 * 109.47280 * 29.99399 * 3 2 1 6 6 H 1.48498 * 109.47220 * 149.99633 * 3 2 1 7 7 C 1.38811 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99889 * 158.96628 * 7 2 1 9 9 N 1.36932 * 120.00379 * 338.96988 * 7 2 1 10 10 C 1.46499 * 119.99984 * 321.29700 * 9 7 2 11 11 C 1.52999 * 109.47527 * 275.00124 * 10 9 7 12 12 C 1.50695 * 109.47189 * 179.97438 * 11 10 9 13 13 O 1.20830 * 120.00166 * 359.97438 * 12 11 10 14 14 O 1.34233 * 119.99736 * 180.02562 * 12 11 10 15 15 S 1.65599 * 120.00164 * 141.29888 * 9 7 2 16 16 O 1.42106 * 104.27892 * 329.70819 * 15 9 7 17 17 O 1.42094 * 104.28084 * 201.84950 * 15 9 7 18 18 C 1.81401 * 104.45007 * 85.77738 * 15 9 7 19 19 C 1.52998 * 109.47488 * 180.02562 * 18 15 9 20 20 C 1.50701 * 109.47546 * 180.02562 * 19 18 15 21 21 C 1.38250 * 119.96995 * 270.32028 * 20 19 18 22 22 C 1.38201 * 120.01975 * 180.27447 * 21 20 19 23 23 C 1.38458 * 119.97355 * 359.42424 * 22 21 20 24 24 F 1.35102 * 120.02395 * 180.29868 * 23 22 21 25 25 C 1.38458 * 119.95389 * 0.27715 * 23 22 21 26 26 C 1.38203 * 119.97003 * 359.97438 * 25 23 22 27 27 H 0.97000 * 119.99855 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46952 * 35.00725 * 10 9 7 29 29 H 1.08999 * 109.46922 * 154.99631 * 10 9 7 30 30 H 1.09004 * 109.47041 * 300.00361 * 11 10 9 31 31 H 1.08998 * 109.46696 * 59.99650 * 11 10 9 32 32 H 0.96706 * 116.99675 * 180.02562 * 14 12 11 33 33 H 1.08996 * 109.47016 * 59.99974 * 18 15 9 34 34 H 1.09004 * 109.47177 * 299.99922 * 18 15 9 35 35 H 1.09004 * 109.47474 * 59.99764 * 19 18 15 36 36 H 1.09006 * 109.47129 * 300.00347 * 19 18 15 37 37 H 1.07997 * 119.99153 * 0.02562 * 21 20 19 38 38 H 1.08003 * 120.01164 * 179.69740 * 22 21 20 39 39 H 1.07994 * 120.01768 * 180.02562 * 25 23 22 40 40 H 1.08003 * 119.98416 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0363 -1.2335 -0.3352 9 7 1.3940 -2.3484 0.4266 10 6 0.4820 -2.3072 1.5724 11 6 1.2853 -2.4320 2.8685 12 6 0.3472 -2.3890 4.0470 13 8 -0.8419 -2.2703 3.8687 14 8 0.8328 -2.4816 5.2950 15 16 1.6797 -3.7811 -0.3532 16 8 1.9444 -3.4020 -1.6970 17 8 0.5561 -4.5876 -0.0274 18 6 3.1798 -4.4324 0.4317 19 6 3.5515 -5.7705 -0.2104 20 6 4.7974 -6.3119 0.4421 21 6 6.0411 -5.9803 -0.0624 22 6 7.1841 -6.4808 0.5316 23 6 7.0837 -7.3049 1.6397 24 9 8.2006 -7.7899 2.2249 25 6 5.8378 -7.6313 2.1479 26 6 4.6959 -7.1338 1.5490 27 1 -0.4850 0.8401 -0.0004 28 1 -0.0609 -1.3621 1.5708 29 1 -0.2261 -3.1330 1.5029 30 1 1.8282 -3.3772 2.8699 31 1 1.9934 -1.6062 2.9378 32 1 0.1922 -2.4496 6.0188 33 1 2.9987 -4.5778 1.4966 34 1 3.9977 -3.7248 0.2954 35 1 3.7327 -5.6247 -1.2753 36 1 2.7337 -6.4783 -0.0746 37 1 6.1193 -5.3333 -0.9235 38 1 8.1555 -6.2257 0.1344 39 1 5.7583 -8.2737 3.0124 40 1 3.7240 -7.3886 1.9450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:29 Heat of formation + Delta-G solvation = -183.309838 kcal Electronic energy + Delta-G solvation = -28083.714331 eV Core-core repulsion = 23712.254824 eV Total energy + Delta-G solvation = -4371.459506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -49.05667 -39.85110 -39.38681 -36.28159 -36.01306 -35.56470 -34.85582 -34.14282 -31.94458 -31.33089 -30.07429 -29.28304 -25.22919 -24.34314 -23.25033 -23.14625 -21.32167 -20.41189 -18.51231 -17.87229 -17.84671 -17.33494 -16.66432 -16.54782 -16.01828 -15.88838 -15.74641 -15.54662 -15.25253 -15.04961 -14.54777 -14.21718 -14.08249 -13.69754 -13.38415 -13.12067 -13.11689 -12.95498 -12.79170 -12.26076 -12.07738 -11.87987 -11.45978 -11.35312 -11.34444 -11.19603 -11.12190 -11.03421 -11.00034 -10.92131 -10.68030 -10.38011 -10.14769 -10.08145 -9.92523 -9.30938 -9.09229 -8.69274 -7.81190 -6.32609 -4.07418 0.90779 1.03376 1.20630 2.59497 3.16189 3.23586 3.25559 3.33688 3.37467 3.89837 4.07733 4.29124 4.48978 4.57925 4.68902 4.73911 4.78509 4.91906 5.08307 5.08900 5.11196 5.38819 5.43295 5.50371 5.58978 5.70578 5.82283 5.87106 5.91456 5.92524 6.01651 6.05476 6.19286 6.36942 6.51728 6.69771 6.77873 7.11160 7.32542 7.65928 8.23001 8.31813 8.93445 9.30210 10.70020 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010189 B = 0.003546 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.495992 B = 7894.306661 C = 8778.437787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.044 3.956 3 Si 0.912 3.088 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.298 4.298 8 H 0.090 0.910 9 N -0.841 5.841 10 C 0.131 3.869 11 C -0.132 4.132 12 C 0.480 3.520 13 O -0.511 6.511 14 O -0.526 6.526 15 S 2.553 3.447 16 O -0.960 6.960 17 O -0.990 6.990 18 C -0.631 4.631 19 C -0.073 4.073 20 C -0.077 4.077 21 C -0.087 4.087 22 C -0.151 4.151 23 C 0.088 3.912 24 F -0.143 7.143 25 C -0.151 4.151 26 C -0.088 4.088 27 H 0.269 0.731 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.402 0.598 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.311 -9.725 6.565 15.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.166 4.166 3 Si 0.738 3.262 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.433 4.433 8 H 0.108 0.892 9 N -0.671 5.671 10 C 0.003 3.997 11 C -0.172 4.172 12 C 0.322 3.678 13 O -0.398 6.398 14 O -0.338 6.338 15 S 2.652 3.348 16 O -0.950 6.950 17 O -0.980 6.980 18 C -0.756 4.756 19 C -0.111 4.111 20 C -0.078 4.078 21 C -0.105 4.105 22 C -0.169 4.169 23 C 0.069 3.931 24 F -0.122 7.122 25 C -0.170 4.170 26 C -0.106 4.106 27 H 0.080 0.920 28 H 0.137 0.863 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.131 0.869 32 H 0.259 0.741 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.651 -10.113 5.464 15.009 hybrid contribution 0.796 0.839 1.190 1.659 sum 10.446 -9.274 6.654 15.473 Atomic orbital electron populations 1.69993 1.06147 1.27681 1.44741 1.25455 0.95112 0.99835 0.96150 0.86188 0.79598 0.81686 0.78711 1.20120 1.20785 1.19317 1.18999 0.95153 0.84512 1.44670 0.89193 1.52524 1.56775 1.19739 1.38063 1.21107 0.91041 1.06957 0.80636 1.22078 0.99021 1.04858 0.91247 1.23801 0.88904 0.71467 0.83641 1.90721 1.18101 1.44979 1.85999 1.84590 1.46023 1.85747 1.17392 1.07706 0.75836 0.75580 0.75666 1.93481 1.86017 1.81221 1.34236 1.93446 1.46934 1.72315 1.85289 1.30845 1.25229 1.06164 1.13386 1.20322 0.96022 0.94714 1.00045 1.19840 0.94795 0.97121 0.96044 1.21014 0.90955 0.98611 0.99908 1.21143 1.00254 0.99308 0.96227 1.17734 0.82466 0.98293 0.94620 1.91489 1.50808 1.86489 1.83422 1.21129 0.91061 1.02860 1.01931 1.20990 0.98465 0.96351 0.94834 0.92024 0.86265 0.90686 0.89422 0.86876 0.74069 0.85864 0.85085 0.89369 0.89528 0.84577 0.84715 0.84748 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.41 11.47 55.49 0.64 -21.77 16 2 C 0.04 1.08 5.00 -17.43 -0.09 0.99 16 3 Si 0.91 19.00 29.60 -169.99 -5.03 13.97 16 4 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.30 -7.12 8.80 -15.06 -0.13 -7.25 16 8 H 0.09 2.02 7.91 -52.48 -0.42 1.60 16 9 N -0.84 -18.89 2.74 -59.91 -0.16 -19.05 16 10 C 0.13 2.83 4.55 -4.04 -0.02 2.81 16 11 C -0.13 -2.23 6.11 -27.89 -0.17 -2.40 16 12 C 0.48 7.94 8.33 36.00 0.30 8.24 16 13 O -0.51 -10.15 16.74 -18.75 -0.31 -10.47 16 14 O -0.53 -6.66 13.42 -39.27 -0.53 -7.19 16 15 S 2.55 52.41 5.38 -107.50 -0.58 51.83 16 16 O -0.96 -23.11 17.30 -57.54 -1.00 -24.11 16 17 O -0.99 -22.36 16.44 -57.54 -0.95 -23.31 16 18 C -0.63 -9.08 6.16 37.16 0.23 -8.85 16 19 C -0.07 -0.92 5.35 -27.88 -0.15 -1.06 16 20 C -0.08 -0.88 5.13 -104.62 -0.54 -1.41 16 21 C -0.09 -0.92 9.70 -39.59 -0.38 -1.31 16 22 C -0.15 -1.54 10.03 -39.51 -0.40 -1.94 16 23 C 0.09 0.96 7.30 -39.42 -0.29 0.68 16 24 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 25 C -0.15 -1.53 10.03 -39.51 -0.40 -1.92 16 26 C -0.09 -0.92 9.70 -39.59 -0.38 -1.30 16 27 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.12 2.93 5.52 -51.93 -0.29 2.65 16 29 H 0.07 1.69 6.73 -51.93 -0.35 1.34 16 30 H 0.09 1.23 7.27 -51.93 -0.38 0.86 16 31 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 32 H 0.40 3.27 9.10 45.56 0.41 3.69 16 33 H 0.12 1.54 7.26 -51.93 -0.38 1.17 16 34 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 35 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 36 H 0.09 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 364.65 15.07 5.50 5.50 Total: -1.00 -33.48 364.65 -8.70 -42.18 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -3.90 Total: 8.77 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -2.41 Total: -14.74 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.47 Total: -40.83 kcal Atomic # 8 Polarization: -62.29 SS G_CDS: -2.78 Total: -65.07 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Atomic # 16 Polarization: 52.41 SS G_CDS: -0.58 Total: 51.83 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.48 -8.70 -42.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.127 kcal (2) G-P(sol) polarization free energy of solvation -33.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds