Wall clock time and date at job start Wed Apr 1 2020 03:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86799 * 120.00059 * 2 1 4 4 H 1.48495 * 109.47167 * 239.99916 * 3 2 1 5 5 H 1.48503 * 109.47177 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47157 * 119.99783 * 3 2 1 7 7 C 1.40307 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99974 * 189.79831 * 7 2 1 9 9 C 1.40539 * 120.00064 * 9.79080 * 7 2 1 10 10 C 1.44186 * 123.71257 * 23.63543 * 9 7 2 11 11 C 1.32762 * 114.42960 * 180.26715 * 10 9 7 12 12 S 1.75474 * 111.36311 * 359.75287 * 11 10 9 13 13 C 1.39549 * 123.71483 * 203.44012 * 9 7 2 14 14 C 1.46234 * 125.22965 * 0.02562 * 13 9 7 15 15 O 1.21759 * 120.00290 * 359.72561 * 14 13 9 16 16 N 1.34780 * 120.00020 * 179.71877 * 14 13 9 17 17 C 1.46494 * 120.00121 * 180.02562 * 16 14 13 18 18 H 1.08997 * 109.47190 * 325.00513 * 17 16 14 19 19 C 1.52995 * 109.47245 * 205.00104 * 17 16 14 20 20 C 1.50703 * 109.47084 * 65.00388 * 19 17 16 21 21 C 1.38241 * 119.99543 * 269.72531 * 20 19 17 22 22 C 1.38230 * 119.99406 * 179.76535 * 21 20 19 23 23 C 1.38234 * 120.00307 * 0.50782 * 22 21 20 24 24 C 1.38239 * 120.00010 * 359.74710 * 23 22 21 25 25 C 1.38227 * 119.99757 * 359.97438 * 24 23 22 26 26 C 1.50708 * 109.47039 * 84.99883 * 17 16 14 27 27 O 1.20823 * 119.99660 * 359.73072 * 26 17 16 28 28 O 1.34228 * 120.00045 * 179.97438 * 26 17 16 29 29 H 0.96995 * 119.99967 * 0.02562 * 1 2 3 30 30 H 1.07998 * 122.78794 * 0.02562 * 10 9 7 31 31 H 1.08000 * 124.32146 * 179.75638 * 11 10 9 32 32 H 0.97001 * 119.99628 * 0.02562 * 16 14 13 33 33 H 1.09004 * 109.47073 * 184.99638 * 19 17 16 34 34 H 1.08994 * 109.47362 * 304.99747 * 19 17 16 35 35 H 1.08001 * 119.99844 * 359.97438 * 21 20 19 36 36 H 1.08005 * 119.99426 * 180.23139 * 22 21 20 37 37 H 1.07998 * 120.00005 * 179.72644 * 23 22 21 38 38 H 1.07999 * 119.99632 * 179.97438 * 24 23 22 39 39 H 1.08002 * 119.99907 * 179.97438 * 25 24 23 40 40 H 0.96698 * 117.00162 * 180.02562 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0941 1.6964 -1.2124 5 1 1.2754 2.7465 -0.0006 6 1 3.0941 1.6964 1.2126 7 6 2.0079 -1.2151 0.0005 8 1 3.0761 -1.2218 0.1597 9 6 1.3206 -2.4234 -0.2059 10 6 0.0554 -2.5175 -0.8910 11 6 -0.4320 -3.7494 -0.9772 12 16 0.6391 -4.9151 -0.2202 13 6 1.7894 -3.6648 0.2262 14 6 3.0426 -3.8894 0.9455 15 8 3.7713 -2.9497 1.2073 16 7 3.3910 -5.1367 1.3190 17 6 4.6462 -5.3617 2.0401 18 1 5.4037 -4.6675 1.6763 19 6 5.1174 -6.7986 1.8076 20 6 5.4553 -6.9870 0.3511 21 6 4.4831 -7.4137 -0.5343 22 6 4.7917 -7.5819 -1.8711 23 6 6.0751 -7.3335 -2.3208 24 6 7.0486 -6.9120 -1.4344 25 6 6.7385 -6.7383 -0.0987 26 6 4.4259 -5.1375 3.5140 27 8 3.3337 -4.8174 3.9197 28 8 5.4441 -5.2887 4.3755 29 1 -0.4850 0.8400 -0.0004 30 1 -0.4554 -1.6568 -1.2967 31 1 -1.3683 -4.0019 -1.4526 32 1 2.8107 -5.8854 1.1102 33 1 6.0021 -6.9934 2.4139 34 1 4.3243 -7.4912 2.0892 35 1 3.4816 -7.6123 -0.1820 36 1 4.0312 -7.9116 -2.5635 37 1 6.3173 -7.4692 -3.3645 38 1 8.0513 -6.7184 -1.7857 39 1 7.4991 -6.4093 0.5939 40 1 5.2542 -5.1344 5.3110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601078990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:36 Heat of formation + Delta-G solvation = -85.249173 kcal Electronic energy + Delta-G solvation = -27403.722334 eV Core-core repulsion = 23467.284282 eV Total energy + Delta-G solvation = -3936.438052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.34672 -39.15024 -38.14217 -36.19588 -35.75075 -34.83296 -33.05691 -32.02891 -30.81811 -29.48261 -28.64855 -26.11897 -24.87351 -22.61425 -22.39332 -21.43011 -20.83770 -19.90464 -18.77285 -17.90632 -17.64736 -16.84435 -16.46742 -15.99050 -15.50963 -15.33356 -15.18260 -14.96192 -14.54164 -14.22966 -13.65990 -13.57468 -13.35258 -13.15039 -12.91113 -12.57193 -12.45609 -12.26240 -12.05728 -11.79732 -11.62574 -11.42465 -11.23080 -11.12830 -11.11277 -10.97575 -10.92565 -10.45776 -10.29851 -10.14707 -9.63272 -9.25183 -8.84448 -8.67946 -8.59138 -8.41536 -7.48675 -7.12764 -7.04147 -4.52305 1.38058 1.48851 2.15731 2.48980 2.98634 3.00263 3.04165 3.08041 3.14767 3.64096 3.81167 3.85017 3.85627 3.96434 4.47684 4.73061 4.84711 4.91592 5.06486 5.14695 5.24541 5.27270 5.46978 5.54223 5.59888 5.70021 5.81879 6.04811 6.07122 6.10593 6.51453 6.58203 6.59529 6.64808 6.69751 6.83783 7.06189 7.08301 7.16545 7.21244 7.46724 7.69730 8.14308 8.32902 8.38950 8.59169 8.75368 9.51841 9.86843 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.009882 B = 0.004029 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.744092 B = 6947.684060 C = 7642.485369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.067 3.933 3 Si 0.925 3.075 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.375 4.375 8 H 0.111 0.889 9 C 0.142 3.858 10 C -0.099 4.099 11 C -0.204 4.204 12 S -0.050 6.050 13 C -0.425 4.425 14 C 0.608 3.392 15 O -0.562 6.562 16 N -0.724 5.724 17 C 0.173 3.827 18 H 0.123 0.877 19 C -0.082 4.082 20 C -0.080 4.080 21 C -0.102 4.102 22 C -0.114 4.114 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.113 4.113 26 C 0.459 3.541 27 O -0.493 6.493 28 O -0.523 6.523 29 H 0.289 0.711 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.395 0.605 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.667 -11.713 -0.586 14.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.154 4.154 3 Si 0.749 3.251 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.406 4.406 8 H 0.129 0.871 9 C 0.130 3.870 10 C -0.131 4.131 11 C -0.338 4.338 12 S 0.204 5.796 13 C -0.543 4.543 14 C 0.407 3.593 15 O -0.445 6.445 16 N -0.378 5.378 17 C 0.064 3.936 18 H 0.141 0.859 19 C -0.119 4.119 20 C -0.080 4.080 21 C -0.120 4.120 22 C -0.132 4.132 23 C -0.141 4.141 24 C -0.139 4.139 25 C -0.131 4.131 26 C 0.297 3.703 27 O -0.378 6.378 28 O -0.334 6.334 29 H 0.100 0.900 30 H 0.163 0.837 31 H 0.155 0.845 32 H 0.230 0.770 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 8.668 -12.392 -0.509 15.131 hybrid contribution -0.426 2.031 0.432 2.120 sum 8.242 -10.361 -0.077 13.239 Atomic orbital electron populations 1.69663 1.08070 1.30483 1.31863 1.26380 0.94951 1.02581 0.91538 0.86051 0.79973 0.78366 0.80734 1.18327 1.20078 1.18264 1.20008 0.97740 0.88831 1.34023 0.87147 1.17914 0.89531 0.91751 0.87765 1.21712 0.96329 0.96063 0.99001 1.24932 1.03313 0.96996 1.08598 1.82630 1.18001 1.14122 1.64821 1.22415 1.04620 0.95699 1.31611 1.16824 0.84621 0.80748 0.77127 1.90651 1.53625 1.41356 1.58817 1.45653 1.22064 1.10360 1.59721 1.20141 0.90679 0.98525 0.84243 0.85906 1.20819 1.02962 0.94112 0.94042 1.19607 0.93961 0.99691 0.94736 1.21045 0.98652 0.98864 0.93431 1.21131 0.96554 0.99883 0.95664 1.21134 0.93569 0.99926 0.99456 1.21085 0.99343 0.99990 0.93492 1.21019 0.96037 1.00074 0.96002 1.24493 0.81978 0.73339 0.90464 1.90751 1.26281 1.41676 1.79098 1.84528 1.42931 1.83323 1.22636 0.90018 0.83733 0.84490 0.77042 0.88336 0.90018 0.86152 0.86019 0.86368 0.86271 0.86001 0.73814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.04 10.82 55.57 0.60 -18.44 16 2 C 0.07 1.67 5.39 -17.28 -0.09 1.57 16 3 Si 0.93 18.83 29.57 -169.99 -5.03 13.81 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.38 -10.27 8.52 -37.94 -0.32 -10.59 16 8 H 0.11 3.16 6.04 -52.49 -0.32 2.84 16 9 C 0.14 3.83 5.67 -106.21 -0.60 3.22 16 10 C -0.10 -2.42 9.04 -39.12 -0.35 -2.78 16 11 C -0.20 -4.48 11.07 28.86 0.32 -4.16 16 12 S -0.05 -1.09 22.25 -107.50 -2.39 -3.48 16 13 C -0.42 -10.89 6.51 -35.88 -0.23 -11.13 16 14 C 0.61 15.08 7.59 -13.05 -0.10 14.98 16 15 O -0.56 -15.48 14.11 5.14 0.07 -15.41 16 16 N -0.72 -14.09 4.06 -56.38 -0.23 -14.32 16 17 C 0.17 2.79 2.47 -69.08 -0.17 2.62 16 18 H 0.12 2.12 7.57 -51.93 -0.39 1.73 16 19 C -0.08 -0.96 4.86 -27.88 -0.14 -1.09 16 20 C -0.08 -1.00 4.95 -104.62 -0.52 -1.52 16 21 C -0.10 -1.31 9.11 -39.58 -0.36 -1.67 16 22 C -0.11 -1.39 10.05 -39.59 -0.40 -1.79 16 23 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 24 C -0.12 -1.36 10.05 -39.59 -0.40 -1.76 16 25 C -0.11 -1.33 9.70 -39.59 -0.38 -1.71 16 26 C 0.46 7.70 7.66 36.01 0.28 7.98 16 27 O -0.49 -10.43 17.07 -18.75 -0.32 -10.75 16 28 O -0.52 -6.47 13.23 -39.25 -0.52 -6.99 16 29 H 0.29 6.35 8.29 -40.82 -0.34 6.01 16 30 H 0.15 3.52 6.41 -52.49 -0.34 3.18 16 31 H 0.14 2.53 8.06 -52.49 -0.42 2.11 16 32 H 0.39 7.08 6.93 -40.82 -0.28 6.80 16 33 H 0.10 0.95 7.94 -51.93 -0.41 0.54 16 34 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.12 1.46 7.60 -52.49 -0.40 1.06 16 36 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 40 H 0.40 3.38 9.10 45.56 0.41 3.79 16 LS Contribution 363.35 15.07 5.48 5.48 Total: -1.00 -33.31 363.35 -9.60 -42.91 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -3.39 Total: 16.80 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -3.87 Total: -9.61 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.37 Total: -32.75 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.77 Total: -33.15 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.81 kcal Atomic # 16 Polarization: -1.09 SS G_CDS: -2.39 Total: -3.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.31 -9.60 -42.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.339 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds