Wall clock time and date at job start Wed Apr 1 2020 04:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46786 * 2 1 4 4 C 1.50696 * 109.47060 * 240.00404 * 2 1 3 5 5 H 1.07994 * 120.00065 * 243.43146 * 4 2 1 6 6 C 1.37881 * 120.00068 * 63.42872 * 4 2 1 7 7 N 1.31514 * 120.00029 * 192.03484 * 6 4 2 8 8 Si 1.86793 * 119.99932 * 12.04316 * 6 4 2 9 9 H 1.48502 * 109.47417 * 84.77409 * 8 6 4 10 10 H 1.48497 * 109.47400 * 204.77771 * 8 6 4 11 11 H 1.48506 * 109.47157 * 324.77819 * 8 6 4 12 12 C 1.52997 * 109.47318 * 120.00117 * 2 1 3 13 13 N 1.46497 * 109.47055 * 300.00466 * 12 2 1 14 14 S 1.65601 * 120.00032 * 164.48264 * 13 12 2 15 15 O 1.42106 * 106.40053 * 311.18157 * 14 13 12 16 16 O 1.42101 * 106.40524 * 178.25859 * 14 13 12 17 17 C 1.76205 * 107.21852 * 64.71754 * 14 13 12 18 18 C 1.37882 * 120.06333 * 244.25186 * 17 14 13 19 19 C 1.38433 * 120.22470 * 180.30402 * 18 17 14 20 20 C 1.38244 * 120.34834 * 359.66713 * 19 18 17 21 21 C 1.38278 * 120.12286 * 0.02645 * 20 19 18 22 22 F 1.35107 * 120.11329 * 179.97438 * 21 20 19 23 23 C 1.39673 * 120.06397 * 63.94825 * 17 14 13 24 24 C 1.47561 * 120.17162 * 359.97438 * 23 17 14 25 25 O 1.21489 * 120.00463 * 270.27006 * 24 23 17 26 26 O 1.34728 * 120.00055 * 90.26712 * 24 23 17 27 27 H 1.08996 * 109.47164 * 310.06507 * 1 2 3 28 28 H 1.08999 * 109.47133 * 70.07169 * 1 2 3 29 29 H 1.08998 * 109.47186 * 190.06736 * 1 2 3 30 30 H 1.09005 * 109.46719 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47162 * 300.00278 * 3 2 1 32 32 H 1.09003 * 109.46936 * 60.00569 * 3 2 1 33 33 H 0.96996 * 119.99820 * 179.97438 * 7 6 4 34 34 H 1.08993 * 109.47315 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.46964 * 60.00226 * 12 2 1 36 36 H 0.96994 * 120.00462 * 344.47503 * 13 12 2 37 37 H 1.08001 * 119.89213 * 359.97438 * 18 17 14 38 38 H 1.07990 * 119.82644 * 179.69668 * 19 18 17 39 39 H 1.08004 * 119.94182 * 180.02562 * 20 19 18 40 40 H 0.96702 * 117.00482 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6067 -1.6196 -1.1324 6 6 1.7586 -0.1994 -2.4815 7 7 1.9842 -0.9277 -3.5531 8 14 1.0674 1.5274 -2.6544 9 1 2.1814 2.5094 -2.6482 10 1 0.3193 1.6355 -3.9326 11 1 0.1521 1.8101 -1.5196 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 16 1.6139 -0.7832 3.9192 15 8 1.0574 -2.0774 3.7328 16 8 1.1127 0.1491 4.8673 17 6 3.3149 -1.0247 4.3102 18 6 3.8232 -2.3015 4.4230 19 6 5.1577 -2.4951 4.7362 20 6 5.9936 -1.4115 4.9318 21 6 5.5005 -0.1249 4.8160 22 9 6.3175 0.9340 5.0077 23 6 4.1525 0.0768 4.5002 24 6 3.6171 1.4460 4.3739 25 8 3.6279 2.0055 3.2956 26 8 3.1161 2.0758 5.4545 27 1 -0.3633 0.6614 0.7865 28 1 -0.3633 0.3503 -0.9661 29 1 -0.3633 -1.0118 0.1796 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.7912 -0.5683 -4.4331 34 1 3.1300 -0.7217 1.2490 35 1 1.6768 -1.7490 1.2491 36 1 1.1920 0.8672 2.3742 37 1 3.1769 -3.1534 4.2717 38 1 5.5479 -3.4979 4.8278 39 1 7.0338 -1.5702 5.1755 40 1 2.7772 2.9718 5.3226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603575934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:54 Heat of formation + Delta-G solvation = -181.121167 kcal Electronic energy + Delta-G solvation = -29710.399815 eV Core-core repulsion = 25339.035217 eV Total energy + Delta-G solvation = -4371.364599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.31767 -41.63155 -39.84089 -39.00368 -38.39415 -37.28020 -37.11525 -34.98774 -33.24093 -33.01246 -32.08387 -28.02076 -27.36925 -26.55959 -26.28579 -24.66509 -22.84405 -21.05470 -20.88669 -19.78912 -19.37217 -18.82591 -18.40299 -18.26860 -17.96549 -17.18887 -17.02931 -16.94030 -16.87253 -16.29127 -16.16868 -15.80843 -15.42884 -14.79837 -14.75658 -14.63585 -14.49281 -14.18733 -13.87244 -13.75695 -13.63607 -13.44885 -13.40061 -13.25200 -13.19405 -13.14611 -12.71398 -12.36992 -12.32455 -12.01609 -11.94980 -11.88524 -11.71416 -11.01085 -10.75113 -10.61834 -10.53193 -10.31320 -10.20284 -8.27621 -6.27546 -0.93891 -0.67258 -0.34832 0.62551 1.35518 1.38756 1.48788 1.65375 1.73042 2.04575 2.35453 2.47661 2.72176 3.09440 3.18802 3.55351 3.62208 3.85023 3.96120 3.98874 4.15495 4.34519 4.40589 4.44906 4.49623 4.60649 4.82305 4.84114 4.86250 4.93835 4.95566 5.02410 5.10125 5.22840 5.28078 5.44556 5.49936 5.73548 5.81451 5.96459 6.34507 6.65305 6.76982 7.37601 8.88644 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013895 B = 0.004224 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.613389 B = 6627.412555 C = 6752.986951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.030 3.970 3 C -0.144 4.144 4 C -0.507 4.507 5 H 0.045 0.955 6 C 0.022 3.978 7 N -0.943 5.943 8 Si 0.937 3.063 9 H -0.288 1.288 10 H -0.316 1.316 11 H -0.216 1.216 12 C 0.150 3.850 13 N -1.104 6.104 14 S 2.693 3.307 15 O -0.964 6.964 16 O -0.965 6.965 17 C -0.631 4.631 18 C -0.034 4.034 19 C -0.071 4.071 20 C -0.086 4.086 21 C 0.103 3.897 22 F -0.132 7.132 23 C -0.069 4.069 24 C 0.506 3.494 25 O -0.495 6.495 26 O -0.485 6.485 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.029 0.971 32 H 0.062 0.938 33 H 0.263 0.737 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.421 0.579 37 H 0.175 0.825 38 H 0.200 0.800 39 H 0.193 0.807 40 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.724 0.136 22.151 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 C -0.200 4.200 4 C -0.545 4.545 5 H 0.063 0.937 6 C -0.176 4.176 7 N -0.583 5.583 8 Si 0.768 3.232 9 H -0.216 1.216 10 H -0.246 1.246 11 H -0.140 1.140 12 C 0.024 3.976 13 N -0.867 5.867 14 S 2.782 3.218 15 O -0.954 6.954 16 O -0.955 6.955 17 C -0.717 4.717 18 C -0.053 4.053 19 C -0.089 4.089 20 C -0.104 4.104 21 C 0.083 3.917 22 F -0.111 7.111 23 C -0.073 4.073 24 C 0.346 3.654 25 O -0.383 6.383 26 O -0.298 6.298 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.258 0.742 37 H 0.193 0.807 38 H 0.217 0.783 39 H 0.210 0.790 40 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 6.262 -0.486 22.295 23.163 hybrid contribution 0.401 2.146 -1.115 2.451 sum 6.662 1.660 21.180 22.265 Atomic orbital electron populations 1.22232 0.96665 1.00900 1.00333 1.18620 0.93458 0.92728 0.92467 1.22260 1.00958 0.97461 0.99356 1.21052 1.33891 1.09607 0.89986 0.93708 1.25691 0.95508 1.00829 0.95547 1.70063 1.51129 1.38241 0.98830 0.86427 0.79421 0.81086 0.76254 1.21555 1.24617 1.13990 1.21194 0.97955 0.95543 0.82899 1.55350 1.78438 1.30355 1.22602 1.01824 0.74029 0.73561 0.72400 1.93582 1.75335 1.40659 1.85790 1.93613 1.78453 1.63321 1.60132 1.30945 1.25483 0.99272 1.16040 1.21523 0.97980 0.94518 0.91290 1.21963 0.91460 1.01565 0.93899 1.21951 1.03770 0.88634 0.96051 1.17895 0.86064 0.85862 1.01914 1.91553 1.71378 1.55660 1.92499 1.18616 0.94158 0.90188 1.04298 1.20977 0.75095 0.86809 0.82505 1.91034 1.52340 1.66298 1.28600 1.84639 1.71659 1.36301 1.37219 0.92642 0.93942 0.93210 0.93367 0.95232 0.91926 0.92801 0.92050 0.90599 0.74166 0.80744 0.78318 0.79003 0.70193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.79 7.54 71.98 0.54 -5.25 16 2 C 0.03 1.27 0.51 -52.93 -0.03 1.25 16 3 C -0.14 -5.86 7.48 71.98 0.54 -5.32 16 4 C -0.51 -27.21 8.62 25.60 0.22 -26.99 16 5 H 0.04 2.62 7.99 -2.91 -0.02 2.60 16 6 C 0.02 1.24 5.34 84.66 0.45 1.69 16 7 N -0.94 -57.78 13.96 21.45 0.30 -57.48 16 8 Si 0.94 44.44 22.76 68.60 1.56 46.01 16 9 H -0.29 -13.58 7.09 99.48 0.71 -12.87 16 10 H -0.32 -15.39 7.11 99.48 0.71 -14.68 16 11 H -0.22 -9.02 4.67 99.48 0.47 -8.56 16 12 C 0.15 5.46 5.04 86.38 0.43 5.90 16 13 N -1.10 -34.48 5.06 -187.50 -0.95 -35.43 16 14 S 2.69 78.09 5.08 -56.49 -0.29 77.80 16 15 O -0.96 -30.96 16.44 -128.00 -2.10 -33.07 16 16 O -0.97 -30.17 16.33 -123.33 -2.01 -32.18 16 17 C -0.63 -15.58 5.91 22.53 0.13 -15.45 16 18 C -0.03 -0.61 9.54 22.23 0.21 -0.40 16 19 C -0.07 -0.78 10.04 22.32 0.22 -0.56 16 20 C -0.09 -1.10 10.01 22.28 0.22 -0.87 16 21 C 0.10 2.19 7.29 22.69 0.17 2.36 16 22 F -0.13 -3.03 16.83 44.97 0.76 -2.28 16 23 C -0.07 -1.79 5.75 -20.07 -0.12 -1.91 16 24 C 0.51 14.08 5.45 70.28 0.38 14.46 16 25 O -0.49 -15.88 17.70 19.87 0.35 -15.52 16 26 O -0.48 -11.01 12.82 -52.68 -0.68 -11.68 16 27 H 0.05 1.87 7.50 -2.39 -0.02 1.85 16 28 H 0.04 1.80 4.44 -2.39 -0.01 1.79 16 29 H 0.05 1.96 8.11 -2.39 -0.02 1.95 16 30 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.03 1.26 2.12 -2.39 -0.01 1.26 16 32 H 0.06 2.17 6.60 -2.39 -0.02 2.16 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.08 2.77 7.75 -2.38 -0.02 2.75 16 36 H 0.42 12.42 6.55 -96.75 -0.63 11.79 16 37 H 0.18 2.62 7.33 -2.91 -0.02 2.60 16 38 H 0.20 0.36 8.06 -2.92 -0.02 0.33 16 39 H 0.19 0.94 8.06 -2.91 -0.02 0.92 16 40 H 0.44 5.72 9.11 -74.06 -0.67 5.05 16 Total: -1.00 -77.18 342.55 -0.09 -77.27 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -0.42 Total: 17.66 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 3.39 Total: -31.09 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -0.65 Total: -92.91 kcal Atomic # 8 Polarization: -88.01 SS G_CDS: -4.44 Total: -92.45 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.76 Total: -2.28 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.56 Total: 46.01 kcal Atomic # 16 Polarization: 78.09 SS G_CDS: -0.29 Total: 77.80 kcal Total: -77.18 -0.09 -77.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603575934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.852 kcal (2) G-P(sol) polarization free energy of solvation -77.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds