Wall clock time and date at job start Wed Apr 1 2020 04:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47036 * 2 1 4 4 H 1.09003 * 109.47035 * 305.44518 * 3 2 1 5 5 C 1.50691 * 109.47420 * 185.44037 * 3 2 1 6 6 H 1.08007 * 119.99996 * 240.00616 * 5 3 2 7 7 C 1.37878 * 120.00442 * 60.00008 * 5 3 2 8 8 N 1.31517 * 119.99409 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00382 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47137 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46966 * 120.00372 * 9 7 5 12 12 H 1.48503 * 109.47085 * 239.99909 * 9 7 5 13 13 N 1.46508 * 109.46760 * 65.43711 * 3 2 1 14 14 S 1.65599 * 120.00072 * 240.82812 * 13 3 2 15 15 O 1.42099 * 106.39860 * 182.11497 * 14 13 3 16 16 O 1.42099 * 106.40291 * 49.19985 * 14 13 3 17 17 C 1.76197 * 107.21814 * 295.65866 * 14 13 3 18 18 C 1.37874 * 119.88600 * 115.12074 * 17 14 13 19 19 C 1.39684 * 119.86846 * 179.74205 * 18 17 14 20 20 C 1.47569 * 120.16859 * 180.25052 * 19 18 17 21 21 O 1.21491 * 119.99891 * 180.24961 * 20 19 18 22 22 O 1.34732 * 120.00225 * 0.25712 * 20 19 18 23 23 C 1.39907 * 119.66027 * 0.50496 * 19 18 17 24 24 F 1.35100 * 120.11893 * 179.74314 * 23 19 18 25 25 C 1.38284 * 119.77146 * 359.46953 * 23 19 18 26 26 C 1.38248 * 120.12234 * 0.27916 * 25 23 19 27 27 C 1.50688 * 119.82665 * 180.02562 * 26 25 23 28 28 H 1.09002 * 109.46843 * 299.78115 * 1 2 3 29 29 H 1.08992 * 109.47524 * 59.78244 * 1 2 3 30 30 H 1.09004 * 109.46873 * 179.78789 * 1 2 3 31 31 H 1.09006 * 109.46758 * 240.00687 * 2 1 3 32 32 H 1.08990 * 109.47722 * 120.00126 * 2 1 3 33 33 H 0.97002 * 119.99937 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99694 * 60.83306 * 13 3 2 35 35 H 1.07996 * 120.06647 * 359.97220 * 18 17 14 36 36 H 0.96699 * 117.00022 * 179.97438 * 22 20 19 37 37 H 1.07998 * 119.93839 * 180.25375 * 25 23 19 38 38 H 1.08997 * 109.47556 * 86.78788 * 27 26 25 39 39 H 1.09007 * 109.47459 * 206.78657 * 27 26 25 40 40 H 1.09002 * 109.47582 * 326.78628 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5992 1.9837 -0.8372 5 6 3.5409 1.4448 -0.1347 6 1 4.1518 1.8873 0.6383 7 6 4.1343 0.8818 -1.2446 8 7 3.3904 0.3432 -2.1860 9 14 5.9949 0.8839 -1.4112 10 1 6.5972 1.5450 -0.2258 11 1 6.4855 -0.5149 -1.5000 12 1 6.3810 1.6227 -2.6402 13 7 1.6614 2.0943 1.2563 14 16 0.6846 3.4313 1.2339 15 8 0.5460 3.8495 2.5849 16 8 -0.4218 3.1062 0.4036 17 6 1.5696 4.7100 0.4055 18 6 1.1033 5.2014 -0.7953 19 6 1.8023 6.2188 -1.4491 20 6 1.3061 6.7535 -2.7319 21 8 1.9189 7.6353 -3.3002 22 8 0.1734 6.2640 -3.2729 23 6 2.9781 6.7246 -0.8842 24 9 3.6643 7.7050 -1.5112 25 6 3.4324 6.2215 0.3210 26 6 2.7305 5.2181 0.9628 27 6 3.2314 4.6752 2.2762 28 1 -0.3633 0.5104 0.8920 29 1 -0.3634 0.5172 -0.8879 30 1 -0.3633 -1.0277 -0.0038 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.8078 -0.0526 -2.9670 34 1 1.9829 1.7426 2.1012 35 1 0.1974 4.8031 -1.2278 36 1 -0.1121 6.6460 -4.1141 37 1 4.3375 6.6128 0.7616 38 1 2.8466 5.2863 3.0926 39 1 2.8888 3.6476 2.3990 40 1 4.3211 4.6986 2.2873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604981014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:57 Heat of formation + Delta-G solvation = -211.518770 kcal Electronic energy + Delta-G solvation = -29574.203695 eV Core-core repulsion = 25201.520957 eV Total energy + Delta-G solvation = -4372.682738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.34545 -41.52006 -40.10004 -38.37537 -37.66716 -37.24777 -36.88921 -34.36140 -34.03388 -32.32048 -32.12817 -29.15148 -28.48099 -24.85619 -24.72455 -24.56049 -22.79904 -21.88142 -20.52907 -19.56070 -19.05597 -18.81117 -18.37014 -18.19919 -17.70424 -17.30264 -16.99356 -16.94601 -16.46618 -16.23894 -15.56291 -15.42372 -14.92845 -14.86341 -14.70199 -14.58409 -14.42434 -14.29811 -13.53422 -13.48064 -13.26959 -13.13773 -13.10814 -13.01821 -12.88393 -12.86542 -12.71559 -12.63612 -12.59893 -12.20887 -12.01412 -11.81847 -11.69736 -11.45571 -11.27546 -10.48325 -10.42867 -10.27723 -9.94900 -8.06610 -6.19748 -0.87601 -0.54053 -0.34948 1.11802 1.43757 1.49134 1.55952 1.77695 1.99401 2.19374 2.48226 2.68778 2.75738 3.18119 3.22712 3.44246 3.56125 3.87344 4.00326 4.09850 4.28490 4.43948 4.52505 4.56930 4.65457 4.68152 4.71849 4.75376 4.96071 4.99877 5.08191 5.18989 5.35427 5.41806 5.43799 5.51719 5.73709 5.85894 6.13004 6.21421 6.50065 6.78590 6.91459 7.49974 8.96801 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.008999 B = 0.005613 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.617568 B = 4987.619953 C = 5939.585398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.286 3.714 4 H 0.023 0.977 5 C -0.530 4.530 6 H 0.075 0.925 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.942 3.058 10 H -0.258 1.258 11 H -0.285 1.285 12 H -0.294 1.294 13 N -1.092 6.092 14 S 2.710 3.290 15 O -0.975 6.975 16 O -0.981 6.981 17 C -0.709 4.709 18 C 0.066 3.934 19 C -0.215 4.215 20 C 0.537 3.463 21 O -0.534 6.534 22 O -0.499 6.499 23 C 0.205 3.795 24 F -0.115 7.115 25 C -0.181 4.181 26 C 0.092 3.908 27 C -0.154 4.154 28 H 0.046 0.954 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.261 0.739 34 H 0.421 0.579 35 H 0.167 0.833 36 H 0.438 0.562 37 H 0.189 0.811 38 H 0.121 0.879 39 H 0.072 0.928 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.986 8.832 6.060 10.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C 0.180 3.820 4 H 0.041 0.959 5 C -0.569 4.569 6 H 0.094 0.906 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.769 3.231 10 H -0.182 1.182 11 H -0.211 1.211 12 H -0.220 1.220 13 N -0.854 5.854 14 S 2.798 3.202 15 O -0.965 6.965 16 O -0.971 6.971 17 C -0.795 4.795 18 C 0.047 3.953 19 C -0.218 4.218 20 C 0.382 3.618 21 O -0.426 6.426 22 O -0.313 6.313 23 C 0.185 3.815 24 F -0.093 7.093 25 C -0.200 4.200 26 C 0.091 3.909 27 C -0.210 4.210 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.257 0.743 35 H 0.184 0.816 36 H 0.301 0.699 37 H 0.207 0.793 38 H 0.139 0.861 39 H 0.091 0.909 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.574 8.998 6.238 11.247 hybrid contribution 1.530 0.443 -1.592 2.252 sum -1.044 9.441 4.646 10.574 Atomic orbital electron populations 1.21753 0.97064 1.00406 1.00679 1.21803 0.93770 0.98957 1.02090 1.18304 0.93971 0.90425 0.79261 0.95919 1.21805 0.92202 1.37457 1.05468 0.90644 1.25548 1.01368 0.95169 0.95794 1.69990 1.36143 1.39169 1.09823 0.85742 0.81811 0.77518 0.78007 1.18170 1.21130 1.22046 1.55326 1.70199 1.43760 1.16158 1.01291 0.73267 0.72892 0.72737 1.93550 1.86311 1.82565 1.34118 1.93543 1.49909 1.83374 1.70300 1.31029 1.13752 1.23970 1.10768 1.21196 0.96634 0.87946 0.89534 1.19212 0.99776 1.05435 0.97330 1.20372 0.78526 0.78635 0.84265 1.90918 1.58111 1.30871 1.62729 1.84538 1.39453 1.63854 1.43457 1.18045 0.88005 0.84592 0.90869 1.91598 1.77664 1.58434 1.81572 1.21393 1.04267 1.00156 0.94219 1.19952 0.88009 0.88379 0.94576 1.21552 1.05050 1.02271 0.92079 0.93515 0.94472 0.92840 0.90547 0.93226 0.92959 0.74279 0.81606 0.69915 0.79335 0.86119 0.90898 0.86591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 9.52 71.98 0.69 -4.69 16 2 C -0.13 -5.33 5.45 30.60 0.17 -5.17 16 3 C 0.29 12.18 2.26 44.24 0.10 12.28 16 4 H 0.02 1.10 7.70 -2.39 -0.02 1.08 16 5 C -0.53 -24.31 8.84 25.60 0.23 -24.08 16 6 H 0.08 3.23 7.81 -2.91 -0.02 3.21 16 7 C 0.02 1.05 5.29 84.65 0.45 1.49 16 8 N -0.91 -47.69 11.29 21.45 0.24 -47.45 16 9 Si 0.94 39.50 29.54 68.60 2.03 41.53 16 10 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 11 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 13 N -1.09 -37.23 3.73 -172.51 -0.64 -37.87 16 14 S 2.71 90.54 4.79 -56.49 -0.27 90.27 16 15 O -0.98 -32.30 16.38 -128.00 -2.10 -34.40 16 16 O -0.98 -37.67 15.98 -128.00 -2.05 -39.72 16 17 C -0.71 -22.52 5.86 22.23 0.13 -22.39 16 18 C 0.07 2.13 9.11 22.53 0.21 2.34 16 19 C -0.21 -6.80 5.88 -20.06 -0.12 -6.92 16 20 C 0.54 16.42 8.27 70.28 0.58 17.00 16 21 O -0.53 -18.57 16.13 19.87 0.32 -18.25 16 22 O -0.50 -11.81 12.68 -56.42 -0.72 -12.53 16 23 C 0.21 6.12 7.29 22.69 0.17 6.28 16 24 F -0.11 -3.56 15.55 44.97 0.70 -2.86 16 25 C -0.18 -4.52 9.67 22.28 0.22 -4.31 16 26 C 0.09 2.50 5.88 -19.82 -0.12 2.39 16 27 C -0.15 -3.31 8.82 71.23 0.63 -2.68 16 28 H 0.05 1.66 7.46 -2.39 -0.02 1.64 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.08 3.70 5.94 -2.38 -0.01 3.69 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.26 13.23 8.31 -92.71 -0.77 12.46 16 34 H 0.42 12.11 8.55 -96.74 -0.83 11.28 16 35 H 0.17 5.18 6.87 -2.91 -0.02 5.16 16 36 H 0.44 5.63 9.11 -74.06 -0.67 4.95 16 37 H 0.19 3.21 8.06 -2.91 -0.02 3.19 16 38 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.07 1.73 4.85 -2.38 -0.01 1.71 16 40 H 0.12 1.90 8.10 -2.39 -0.02 1.88 16 Total: -1.00 -65.35 354.87 0.46 -64.89 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: -0.38 Total: 24.85 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 3.32 Total: -28.46 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -0.40 Total: -85.32 kcal Atomic # 8 Polarization: -100.36 SS G_CDS: -4.54 Total: -104.90 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.70 Total: -2.86 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Atomic # 16 Polarization: 90.54 SS G_CDS: -0.27 Total: 90.27 kcal Total: -65.35 0.46 -64.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604981014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.628 kcal (2) G-P(sol) polarization free energy of solvation -65.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds