Wall clock time and date at job start Wed Apr 1 2020 04:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47225 * 2 1 4 4 H 1.08999 * 109.47009 * 56.70141 * 3 2 1 5 5 C 1.50705 * 109.46726 * 176.69941 * 3 2 1 6 6 H 1.08000 * 119.99404 * 120.00765 * 5 3 2 7 7 C 1.37871 * 120.00307 * 299.99684 * 5 3 2 8 8 N 1.31519 * 119.99912 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00363 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46980 * 90.00365 * 9 7 5 11 11 H 1.48492 * 109.47544 * 210.00273 * 9 7 5 12 12 H 1.48502 * 109.47058 * 330.00755 * 9 7 5 13 13 N 1.46492 * 109.47127 * 296.70022 * 3 2 1 14 14 S 1.65605 * 119.99963 * 119.41435 * 13 3 2 15 15 O 1.42103 * 106.39872 * 310.76855 * 14 13 3 16 16 O 1.42099 * 106.40093 * 177.85303 * 14 13 3 17 17 C 1.76198 * 107.21924 * 64.31095 * 14 13 3 18 18 C 1.37878 * 119.88467 * 244.29428 * 17 14 13 19 19 C 1.39678 * 119.87262 * 179.69937 * 18 17 14 20 20 C 1.47563 * 120.17704 * 180.30463 * 19 18 17 21 21 O 1.21491 * 120.00476 * 180.30137 * 20 19 18 22 22 O 1.34730 * 119.99645 * 0.29340 * 20 19 18 23 23 C 1.39917 * 119.65372 * 0.60093 * 19 18 17 24 24 F 1.35097 * 120.11552 * 179.69989 * 23 19 18 25 25 C 1.38275 * 119.77175 * 359.41989 * 23 19 18 26 26 C 1.38246 * 120.12360 * 0.28438 * 25 23 19 27 27 C 1.50701 * 119.82689 * 180.02562 * 26 25 23 28 28 H 1.08995 * 109.47234 * 297.27377 * 1 2 3 29 29 H 1.08996 * 109.47143 * 57.27042 * 1 2 3 30 30 H 1.08998 * 109.47614 * 177.27297 * 1 2 3 31 31 H 1.09000 * 109.47233 * 239.99798 * 2 1 3 32 32 H 1.09001 * 109.46754 * 120.00214 * 2 1 3 33 33 H 0.97000 * 120.00303 * 179.97438 * 8 7 5 34 34 H 0.97004 * 120.00195 * 299.40506 * 13 3 2 35 35 H 1.07998 * 120.06478 * 0.03015 * 18 17 14 36 36 H 0.96707 * 117.00053 * 179.97438 * 22 20 19 37 37 H 1.08003 * 119.94364 * 180.25365 * 25 23 19 38 38 H 1.09005 * 109.47117 * 96.13302 * 27 26 25 39 39 H 1.09004 * 109.47039 * 216.13253 * 27 26 25 40 40 H 1.09000 * 109.47139 * 336.12958 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6292 1.9731 0.8589 5 6 3.5448 1.4431 0.0818 6 1 4.1282 1.8955 -0.7065 7 6 4.1767 0.8664 1.1630 8 7 3.4663 0.3153 2.1228 9 14 6.0419 0.8679 1.2648 10 1 6.4984 2.0938 1.9676 11 1 6.4978 -0.3306 2.0136 12 1 6.6125 0.8418 -0.1060 13 7 1.6177 2.1097 -1.2339 14 16 0.6476 3.4498 -1.1602 15 8 -0.4289 3.1187 -0.2937 16 8 0.4612 3.8844 -2.5002 17 6 1.5673 4.7156 -0.3500 18 6 1.1404 5.2030 0.8671 19 6 1.8731 6.2020 1.5122 20 6 1.4260 6.7238 2.8181 21 8 2.0627 7.5966 3.3738 22 8 0.3116 6.2324 3.3940 23 6 3.0298 6.7099 0.9107 24 9 3.7423 7.6805 1.5235 25 6 3.4445 6.2109 -0.3103 26 6 2.7156 5.2177 -0.9377 27 6 3.1740 4.6783 -2.2681 28 1 -0.3633 0.4709 0.9134 29 1 -0.3633 0.5556 -0.8645 30 1 -0.3634 -1.0265 -0.0489 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9108 -0.0908 2.8833 34 1 1.9064 1.7667 -2.0941 35 1 0.2441 4.8094 1.3233 36 1 0.0587 6.6052 4.2498 37 1 4.3393 6.5980 -0.7752 38 1 3.7544 3.7690 -2.1110 39 1 2.3058 4.4528 -2.8874 40 1 3.7934 5.4228 -2.7681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604981015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:00 Heat of formation + Delta-G solvation = -212.398334 kcal Electronic energy + Delta-G solvation = -29580.478364 eV Core-core repulsion = 25207.757486 eV Total energy + Delta-G solvation = -4372.720878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.34960 -41.51931 -40.09421 -38.41027 -37.64967 -37.24847 -36.90749 -34.31087 -34.04367 -32.29649 -32.11461 -29.11550 -28.49372 -24.83820 -24.73254 -24.55724 -22.79748 -21.85409 -20.52933 -19.56179 -19.05000 -18.80317 -18.41164 -18.18203 -17.69990 -17.30832 -16.97661 -16.94230 -16.46853 -16.23798 -15.56596 -15.41806 -14.94257 -14.85389 -14.73699 -14.61985 -14.43196 -14.30343 -13.59669 -13.47109 -13.38035 -13.13269 -13.12682 -12.97908 -12.88231 -12.73968 -12.68836 -12.62012 -12.52692 -12.13535 -12.02341 -11.79457 -11.67148 -11.46108 -11.26816 -10.47861 -10.42250 -10.26488 -9.95752 -8.06232 -6.19332 -0.87221 -0.54044 -0.34619 1.12031 1.44796 1.49254 1.55034 1.77682 2.00326 2.18585 2.48381 2.69311 2.74772 3.18205 3.23220 3.45383 3.57559 3.88080 4.00778 4.11103 4.34318 4.44504 4.53826 4.57367 4.66220 4.69792 4.73893 4.76794 4.97570 5.02715 5.14791 5.19918 5.35599 5.43170 5.45011 5.52189 5.74519 5.86707 6.14037 6.22465 6.51869 6.78479 6.91770 7.50430 8.97084 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.009006 B = 0.005624 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.242637 B = 4977.676297 C = 5940.692717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.286 3.714 4 H 0.023 0.977 5 C -0.531 4.531 6 H 0.076 0.924 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.942 3.058 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.259 1.259 13 N -1.090 6.090 14 S 2.711 3.289 15 O -0.980 6.980 16 O -0.976 6.976 17 C -0.710 4.710 18 C 0.066 3.934 19 C -0.215 4.215 20 C 0.537 3.463 21 O -0.535 6.535 22 O -0.499 6.499 23 C 0.205 3.795 24 F -0.115 7.115 25 C -0.183 4.183 26 C 0.095 3.905 27 C -0.183 4.183 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.261 0.739 34 H 0.422 0.578 35 H 0.167 0.833 36 H 0.438 0.562 37 H 0.188 0.812 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.264 8.584 -5.907 10.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.181 3.819 4 H 0.040 0.960 5 C -0.570 4.570 6 H 0.095 0.905 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.769 3.231 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.183 1.183 13 N -0.852 5.852 14 S 2.800 3.200 15 O -0.971 6.971 16 O -0.966 6.966 17 C -0.796 4.796 18 C 0.047 3.953 19 C -0.218 4.218 20 C 0.382 3.618 21 O -0.427 6.427 22 O -0.313 6.313 23 C 0.184 3.816 24 F -0.093 7.093 25 C -0.202 4.202 26 C 0.094 3.906 27 C -0.239 4.239 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.258 0.742 35 H 0.184 0.816 36 H 0.301 0.699 37 H 0.205 0.795 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.860 8.753 -6.060 11.023 hybrid contribution 1.640 0.506 1.560 2.319 sum -1.219 9.259 -4.500 10.367 Atomic orbital electron populations 1.21759 0.97074 1.00443 1.00693 1.21791 0.93708 0.98930 1.02096 1.18285 0.93538 0.90227 0.79877 0.95959 1.21783 0.92020 1.36939 1.06277 0.90542 1.25538 1.01443 0.95176 0.95666 1.69982 1.36364 1.38543 1.10239 0.85801 0.81841 0.76892 0.78581 1.21307 1.21795 1.18312 1.55231 1.70641 1.43249 1.16073 1.01225 0.73253 0.72842 0.72702 1.93545 1.51696 1.83262 1.68552 1.93492 1.85576 1.82216 1.35287 1.31005 1.14595 1.23892 1.10075 1.21199 0.96390 0.87843 0.89881 1.19210 1.00276 1.05859 0.96488 1.20370 0.78324 0.78441 0.84656 1.90917 1.55997 1.31218 1.64536 1.84539 1.41074 1.64264 1.41407 1.18063 0.87746 0.84739 0.91018 1.91594 1.76232 1.59140 1.82353 1.21429 1.04080 1.00485 0.94242 1.19951 0.87763 0.88057 0.94871 1.21915 1.05708 1.04795 0.91458 0.94496 0.93471 0.92804 0.93224 0.90639 0.92964 0.74220 0.81566 0.69916 0.79472 0.87188 0.87517 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.34 9.56 71.98 0.69 -4.65 16 2 C -0.13 -5.25 5.44 30.59 0.17 -5.08 16 3 C 0.29 12.08 2.29 44.25 0.10 12.18 16 4 H 0.02 1.07 7.69 -2.39 -0.02 1.05 16 5 C -0.53 -24.10 8.84 25.60 0.23 -23.88 16 6 H 0.08 3.21 7.70 -2.91 -0.02 3.18 16 7 C 0.02 1.07 5.30 84.65 0.45 1.52 16 8 N -0.91 -47.56 11.30 21.45 0.24 -47.32 16 9 Si 0.94 39.36 29.54 68.60 2.03 41.39 16 10 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 13 N -1.09 -36.53 4.49 -172.53 -0.77 -37.31 16 14 S 2.71 89.60 4.91 -56.49 -0.28 89.32 16 15 O -0.98 -37.37 15.93 -128.00 -2.04 -39.41 16 16 O -0.98 -31.90 15.41 -128.00 -1.97 -33.87 16 17 C -0.71 -22.48 5.86 22.23 0.13 -22.35 16 18 C 0.07 2.13 9.11 22.53 0.21 2.34 16 19 C -0.22 -6.87 5.88 -20.06 -0.12 -6.99 16 20 C 0.54 16.50 8.27 70.28 0.58 17.08 16 21 O -0.53 -18.69 16.13 19.87 0.32 -18.37 16 22 O -0.50 -11.85 12.68 -56.40 -0.72 -12.56 16 23 C 0.20 6.17 7.29 22.69 0.17 6.34 16 24 F -0.12 -3.62 15.55 44.97 0.70 -2.92 16 25 C -0.18 -4.65 9.63 22.28 0.21 -4.43 16 26 C 0.10 2.59 5.88 -19.82 -0.12 2.48 16 27 C -0.18 -3.95 9.23 71.24 0.66 -3.29 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.65 7.25 -2.39 -0.02 1.64 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 3.64 5.99 -2.39 -0.01 3.62 16 33 H 0.26 13.24 8.31 -92.71 -0.77 12.47 16 34 H 0.42 11.84 8.96 -96.74 -0.87 10.97 16 35 H 0.17 5.17 6.87 -2.91 -0.02 5.15 16 36 H 0.44 5.66 9.11 -74.05 -0.67 4.98 16 37 H 0.19 3.29 8.05 -2.91 -0.02 3.26 16 38 H 0.11 2.39 8.03 -2.38 -0.02 2.37 16 39 H 0.11 2.45 5.11 -2.39 -0.01 2.44 16 40 H 0.12 1.74 8.04 -2.39 -0.02 1.72 16 Total: -1.00 -64.89 355.38 0.44 -64.45 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: -0.42 Total: 25.34 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 3.35 Total: -28.74 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -0.53 Total: -84.62 kcal Atomic # 8 Polarization: -99.80 SS G_CDS: -4.41 Total: -104.21 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.70 Total: -2.92 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Atomic # 16 Polarization: 89.60 SS G_CDS: -0.28 Total: 89.32 kcal Total: -64.89 0.44 -64.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604981015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.946 kcal (2) G-P(sol) polarization free energy of solvation -64.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds