Wall clock time and date at job start Wed Apr 1 2020 03:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00345 * 2 1 4 4 H 1.48501 * 109.47001 * 240.00064 * 3 2 1 5 5 H 1.48504 * 109.47014 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47483 * 119.99895 * 3 2 1 7 7 C 1.38815 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00606 * 155.84721 * 7 2 1 9 9 N 1.36943 * 119.99625 * 335.85231 * 7 2 1 10 10 C 1.46497 * 119.99744 * 326.81371 * 9 7 2 11 11 C 1.50701 * 109.47548 * 276.12581 * 10 9 7 12 12 O 1.20816 * 120.00037 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00008 * 180.02562 * 11 10 9 14 14 S 1.65590 * 120.00008 * 147.09992 * 9 7 2 15 15 O 1.42101 * 106.40547 * 23.25801 * 14 9 7 16 16 O 1.42101 * 106.40292 * 156.18116 * 14 9 7 17 17 C 1.76199 * 107.21871 * 269.71909 * 14 9 7 18 18 C 1.39871 * 126.04063 * 90.02319 * 17 14 9 19 19 N 1.30840 * 108.19961 * 179.97438 * 18 17 14 20 20 N 1.40078 * 108.21072 * 359.97438 * 19 18 17 21 21 C 1.46499 * 126.04071 * 179.97438 * 20 19 18 22 22 H 1.09004 * 110.43579 * 25.72842 * 21 20 19 23 23 C 1.54810 * 110.48987 * 263.18246 * 21 20 19 24 24 C 1.55219 * 101.99029 * 220.51514 * 23 21 20 25 25 O 1.44389 * 103.56436 * 36.88295 * 24 23 21 26 26 C 1.43745 * 106.97131 * 320.00965 * 25 24 23 27 27 C 1.34949 * 107.92292 * 359.76021 * 20 19 18 28 28 H 0.97004 * 119.99754 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47376 * 36.12864 * 10 9 7 30 30 H 1.09007 * 109.47171 * 156.12497 * 10 9 7 31 31 H 0.96698 * 117.00206 * 180.02562 * 13 11 10 32 32 H 1.07995 * 125.89641 * 359.95896 * 18 17 14 33 33 H 1.09002 * 110.90565 * 338.64178 * 23 21 20 34 34 H 1.09003 * 110.90597 * 102.24450 * 23 21 20 35 35 H 1.08997 * 110.52348 * 278.38735 * 24 23 21 36 36 H 1.08995 * 110.77952 * 155.49983 * 24 23 21 37 37 H 1.09003 * 109.88052 * 267.08637 * 26 25 24 38 38 H 1.09001 * 109.87303 * 145.93801 * 26 25 24 39 39 H 1.08004 * 126.12622 * 180.23298 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0193 -1.2434 -0.3821 9 7 1.4153 -2.3360 0.4862 10 6 0.4639 -2.2458 1.5965 11 6 1.2160 -2.2258 2.9023 12 8 2.4229 -2.2808 2.9052 13 8 0.5450 -2.1470 4.0622 14 16 1.7768 -3.8097 -0.1768 15 8 3.0527 -3.6730 -0.7873 16 8 1.4931 -4.7796 0.8222 17 6 0.6278 -4.0899 -1.4829 18 6 0.7971 -3.7205 -2.8213 19 7 -0.2650 -4.0964 -3.4865 20 7 -1.1448 -4.7184 -2.5913 21 6 -2.4539 -5.2859 -2.9234 22 1 -2.4867 -5.5786 -3.9729 23 6 -3.5800 -4.2713 -2.6085 24 6 -4.6754 -5.1851 -1.9966 25 8 -3.9222 -6.1537 -1.2355 26 6 -2.7643 -6.4928 -2.0169 27 6 -0.5713 -4.7067 -1.3698 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1212 -1.3312 1.5003 30 1 -0.2030 -3.1077 1.5745 31 1 1.0707 -2.1369 4.8737 32 1 1.6560 -3.2124 -3.2342 33 1 -3.2437 -3.5293 -1.8844 34 1 -3.9362 -3.7903 -3.5195 35 1 -5.2471 -5.6763 -2.7840 36 1 -5.3356 -4.6137 -1.3441 37 1 -2.9736 -7.3710 -2.6277 38 1 -1.9179 -6.6895 -1.3589 39 1 -0.9949 -5.1139 -0.4635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:27 Heat of formation + Delta-G solvation = -109.874025 kcal Electronic energy + Delta-G solvation = -29428.215702 eV Core-core repulsion = 25079.860573 eV Total energy + Delta-G solvation = -4348.355129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.12437 -39.36054 -39.26583 -35.96066 -35.90129 -34.96659 -34.50766 -33.72736 -31.68440 -30.70512 -29.80949 -28.44125 -27.73090 -24.32157 -23.58966 -22.54426 -21.23557 -21.02594 -20.05843 -18.66803 -17.96972 -17.34236 -17.06839 -16.69922 -16.44136 -16.14134 -15.59332 -15.25463 -14.92832 -14.84392 -14.76601 -14.44928 -14.31535 -14.01347 -13.44059 -13.29610 -12.56516 -12.54805 -12.37259 -12.02863 -11.93115 -11.80683 -11.68467 -11.39800 -11.15904 -11.09793 -11.03350 -10.84657 -10.76789 -10.75730 -10.56411 -10.32553 -10.13276 -9.89689 -9.80811 -9.33599 -9.15550 -8.65729 -8.02513 -6.63076 -4.18521 1.62521 2.00711 2.52720 2.91011 3.09999 3.13752 3.16982 3.26249 3.50379 3.79416 4.03709 4.14051 4.29850 4.46787 4.59603 4.65962 4.73076 4.82880 4.86912 5.11581 5.17465 5.28488 5.30940 5.39313 5.50184 5.62754 5.75778 5.86272 5.97120 6.05831 6.26472 6.42194 6.60135 6.88360 7.02257 7.13955 7.20814 7.36826 7.85997 8.21246 8.64229 8.73193 9.08819 10.36065 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011788 B = 0.004400 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.634298 B = 6361.450824 C = 6666.373835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.035 3.965 3 Si 0.923 3.077 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.250 4.250 8 H 0.112 0.888 9 N -0.800 5.800 10 C 0.134 3.866 11 C 0.461 3.539 12 O -0.505 6.505 13 O -0.528 6.528 14 S 2.605 3.395 15 O -0.974 6.974 16 O -1.005 7.005 17 C -0.782 4.782 18 C 0.140 3.860 19 N -0.307 5.307 20 N -0.367 5.367 21 C 0.126 3.874 22 H 0.116 0.884 23 C -0.167 4.167 24 C 0.048 3.952 25 O -0.368 6.368 26 C 0.034 3.966 27 C 0.154 3.846 28 H 0.275 0.725 29 H 0.149 0.851 30 H 0.095 0.905 31 H 0.396 0.604 32 H 0.193 0.807 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.339 -5.290 -2.438 11.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.176 4.176 3 Si 0.748 3.252 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.394 4.394 8 H 0.130 0.870 9 N -0.624 5.624 10 C 0.004 3.996 11 C 0.301 3.699 12 O -0.391 6.391 13 O -0.340 6.340 14 S 2.703 3.297 15 O -0.964 6.964 16 O -0.994 6.994 17 C -0.873 4.873 18 C -0.049 4.049 19 N -0.126 5.126 20 N -0.147 5.147 21 C 0.022 3.978 22 H 0.134 0.866 23 C -0.206 4.206 24 C -0.029 4.029 25 O -0.286 6.286 26 C -0.044 4.044 27 C 0.005 3.995 28 H 0.086 0.914 29 H 0.166 0.834 30 H 0.113 0.887 31 H 0.253 0.747 32 H 0.210 0.790 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -10.546 -6.221 -3.653 12.778 hybrid contribution 0.464 1.087 0.554 1.305 sum -10.082 -5.134 -3.100 11.731 Atomic orbital electron populations 1.69878 1.06294 1.28642 1.43123 1.25665 0.95313 1.00760 0.95847 0.86027 0.79445 0.79827 0.79892 1.19042 1.20746 1.19380 1.19655 0.97041 0.84163 1.38551 0.87022 1.52991 1.53685 1.22354 1.33416 1.20743 0.91295 1.07704 0.79874 1.24813 0.87739 0.71384 0.85977 1.90640 1.16067 1.44982 1.87443 1.84575 1.45811 1.86399 1.17166 1.07696 0.75391 0.74120 0.72447 1.93378 1.38854 1.86316 1.77821 1.93362 1.86279 1.61654 1.58150 1.32752 1.16649 1.20686 1.17250 1.23450 0.96039 0.94842 0.90578 1.77283 1.01995 1.17343 1.15933 1.49034 1.14503 1.44956 1.06229 1.22675 0.79824 0.93485 1.01792 0.86577 1.23689 0.94784 0.98736 1.03380 1.23644 0.94097 0.89374 0.95798 1.88963 1.35706 1.61521 1.42459 1.23609 0.90428 0.95589 0.94757 1.22242 0.92000 0.95112 0.90196 0.91427 0.83428 0.88696 0.74693 0.79048 0.88826 0.88806 0.91576 0.87986 0.90157 0.88328 0.80227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.60 11.27 55.49 0.63 -18.97 16 2 C 0.03 0.82 4.98 -17.43 -0.09 0.73 16 3 Si 0.92 18.89 29.62 -169.99 -5.03 13.85 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.25 -6.19 8.97 -15.06 -0.14 -6.33 16 8 H 0.11 2.83 7.40 -52.49 -0.39 2.45 16 9 N -0.80 -18.94 2.39 -61.08 -0.15 -19.09 16 10 C 0.13 2.86 5.56 -5.19 -0.03 2.84 16 11 C 0.46 9.81 8.36 36.01 0.30 10.11 16 12 O -0.51 -12.31 17.06 -18.74 -0.32 -12.63 16 13 O -0.53 -8.82 13.42 -39.26 -0.53 -9.35 16 14 S 2.61 60.76 5.75 -107.50 -0.62 60.14 16 15 O -0.97 -25.10 16.75 -57.17 -0.96 -26.06 16 16 O -1.00 -24.25 16.80 -57.17 -0.96 -25.21 16 17 C -0.78 -15.98 6.17 -40.01 -0.25 -16.22 16 18 C 0.14 2.75 11.82 -17.36 -0.21 2.55 16 19 N -0.31 -5.69 12.57 30.62 0.39 -5.30 16 20 N -0.37 -5.94 3.57 -53.38 -0.19 -6.13 16 21 C 0.13 1.46 4.16 -66.40 -0.28 1.19 16 22 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 23 C -0.17 -1.74 6.90 -24.60 -0.17 -1.91 16 24 C 0.05 0.41 7.72 38.33 0.30 0.71 16 25 O -0.37 -4.21 11.52 -35.23 -0.41 -4.61 16 26 C 0.03 0.36 7.19 37.73 0.27 0.63 16 27 C 0.15 2.73 9.92 -17.22 -0.17 2.56 16 28 H 0.28 6.06 8.31 -40.82 -0.34 5.73 16 29 H 0.15 3.22 5.31 -51.93 -0.28 2.95 16 30 H 0.10 1.80 7.58 -51.92 -0.39 1.41 16 31 H 0.40 4.71 9.10 45.56 0.41 5.13 16 32 H 0.19 3.48 8.06 -52.49 -0.42 3.06 16 33 H 0.09 1.20 8.06 -51.93 -0.42 0.78 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 1.12 6.28 -51.93 -0.33 0.79 16 39 H 0.18 2.76 7.36 -52.48 -0.39 2.38 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -33.50 351.96 -6.74 -40.24 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -3.45 Total: 10.98 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -0.45 Total: -3.16 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.67 Total: -49.49 kcal Atomic # 8 Polarization: -74.69 SS G_CDS: -3.17 Total: -77.86 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.85 kcal Atomic # 16 Polarization: 60.76 SS G_CDS: -0.62 Total: 60.14 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.50 -6.74 -40.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.633 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds