Wall clock time and date at job start Wed Apr 1 2020 03:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31543 * 1 3 3 Si 1.86793 * 119.99945 * 2 1 4 4 H 1.48506 * 109.47040 * 269.99901 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99928 * 3 2 1 6 6 H 1.48499 * 109.47037 * 149.99900 * 3 2 1 7 7 C 1.38684 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00048 * 359.97438 * 7 2 1 9 9 O 1.34780 * 119.99727 * 179.97438 * 7 2 1 10 10 C 1.35742 * 116.99876 * 185.03886 * 9 7 2 11 11 C 1.38733 * 120.09674 * 354.66365 * 10 9 7 12 12 C 1.38338 * 119.98629 * 180.32085 * 11 10 9 13 13 F 1.35094 * 119.91743 * 179.97438 * 12 11 10 14 14 C 1.38593 * 120.16806 * 359.92455 * 12 11 10 15 15 C 1.38135 * 120.19084 * 0.05260 * 14 12 11 16 16 C 1.38797 * 120.01512 * 359.97438 * 15 14 12 17 17 N 1.39799 * 120.08854 * 180.02562 * 16 15 14 18 18 C 1.34781 * 119.99369 * 334.38925 * 17 16 15 19 19 O 1.21413 * 120.00226 * 3.81706 * 18 17 16 20 20 C 1.49102 * 119.99373 * 183.81449 * 18 17 16 21 21 O 1.21429 * 120.00456 * 354.85933 * 20 18 17 22 22 C 1.47104 * 119.99609 * 174.85791 * 20 18 17 23 23 C 1.40100 * 120.11417 * 5.23952 * 22 20 18 24 24 C 1.36602 * 119.88449 * 179.78463 * 23 22 20 25 25 C 1.39159 * 120.11285 * 0.47096 * 24 23 22 26 26 O 1.35629 * 119.88224 * 179.75943 * 25 24 23 27 27 C 1.39156 * 120.22647 * 359.78696 * 25 24 23 28 28 C 1.36597 * 120.11859 * 359.97106 * 27 25 24 29 29 H 0.96994 * 120.00488 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.00883 * 0.24664 * 11 10 9 31 31 H 1.08004 * 119.90460 * 180.02562 * 14 12 11 32 32 H 1.07999 * 119.99266 * 179.97438 * 15 14 12 33 33 H 0.96992 * 120.00446 * 154.38541 * 17 16 15 34 34 H 1.08004 * 120.06187 * 0.02562 * 23 22 20 35 35 H 1.08000 * 119.94141 * 180.20785 * 24 23 22 36 36 H 0.96703 * 114.00167 * 270.01789 * 26 25 24 37 37 H 1.07997 * 119.93739 * 179.97438 * 27 25 24 38 38 H 1.07993 * 120.05727 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4969 2.0464 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5469 1.4401 0.7001 7 6 2.0088 -1.2011 -0.0005 8 1 1.4687 -2.1364 -0.0005 9 8 3.3566 -1.2011 -0.0011 10 6 3.9728 -2.4059 -0.1078 11 6 3.2237 -3.5736 -0.0987 12 6 3.8546 -4.8005 -0.2009 13 9 3.1239 -5.9367 -0.1913 14 6 5.2343 -4.8669 -0.3142 15 6 5.9870 -3.7087 -0.3245 16 6 5.3621 -2.4736 -0.2218 17 7 6.1224 -1.3005 -0.2326 18 6 7.4084 -1.3272 0.1700 19 8 7.9269 -2.3816 0.4760 20 6 8.1942 -0.0620 0.2394 21 8 7.7066 0.9780 -0.1545 22 6 9.5601 -0.0736 0.7853 23 6 10.1656 -1.2866 1.1385 24 6 11.4359 -1.2923 1.6409 25 6 12.1247 -0.0952 1.8112 26 8 13.3840 -0.1060 2.3150 27 6 11.5258 1.1127 1.4670 28 6 10.2578 1.1289 0.9592 29 1 -0.4850 0.8400 0.0004 30 1 2.1484 -3.5249 -0.0105 31 1 5.7224 -5.8271 -0.3941 32 1 7.0620 -3.7642 -0.4125 33 1 5.7245 -0.4674 -0.5299 34 1 9.6305 -2.2160 1.0102 35 1 11.9048 -2.2272 1.9103 36 1 13.4226 -0.0378 3.2788 37 1 12.0645 2.0390 1.6015 38 1 9.7938 2.0670 0.6928 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001622869627.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:26 Heat of formation + Delta-G solvation = -105.214633 kcal Electronic energy + Delta-G solvation = -28626.312411 eV Core-core repulsion = 24122.795415 eV Total energy + Delta-G solvation = -4503.516996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.089 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.38834 -41.17355 -40.05452 -39.28416 -38.46176 -36.96472 -36.56390 -34.53407 -32.60150 -31.54759 -30.62013 -29.76434 -28.96084 -25.95219 -25.44410 -23.34989 -23.05434 -22.15625 -21.48684 -20.11290 -18.87335 -18.59742 -18.26661 -17.62244 -17.35379 -16.54161 -15.98487 -15.92331 -15.73243 -15.49644 -15.16072 -15.12183 -14.68111 -14.62572 -14.20855 -14.13397 -13.86943 -13.75069 -13.61963 -13.42426 -12.97750 -12.60936 -12.43411 -12.40880 -12.36168 -11.98514 -11.62617 -11.49372 -11.01451 -10.85166 -10.77708 -10.50153 -10.07259 -9.79479 -9.44141 -9.26203 -9.07491 -9.03189 -8.11349 -7.39657 -6.62280 -4.29933 0.00725 1.08566 1.19725 1.77265 1.90064 2.62374 2.87916 3.08835 3.13803 3.25003 3.43395 3.78665 4.03108 4.04845 4.13485 4.39807 4.48625 4.58215 4.65975 4.85625 4.88130 5.00663 5.14814 5.34511 5.41453 5.57967 5.67755 5.76362 5.86951 5.88389 5.99875 6.03289 6.24399 6.41942 6.54098 6.68269 6.71967 6.74650 6.85458 7.19269 7.33404 7.42705 7.53994 7.77532 7.95059 8.69867 9.22508 10.44102 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.003239 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.160179 B = 8641.634164 C =10976.403666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.069 3.931 3 Si 0.901 3.099 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.394 4.394 8 H 0.111 0.889 9 O -0.204 6.204 10 C 0.168 3.832 11 C -0.246 4.246 12 C 0.136 3.864 13 F -0.147 7.147 14 C -0.224 4.224 15 C -0.057 4.057 16 C 0.044 3.956 17 N -0.614 5.614 18 C 0.479 3.521 19 O -0.505 6.505 20 C 0.395 3.605 21 O -0.418 6.418 22 C -0.177 4.177 23 C -0.047 4.047 24 C -0.166 4.166 25 C 0.144 3.856 26 O -0.500 6.500 27 C -0.168 4.168 28 C -0.037 4.037 29 H 0.283 0.717 30 H 0.151 0.849 31 H 0.127 0.873 32 H 0.158 0.842 33 H 0.423 0.577 34 H 0.179 0.821 35 H 0.136 0.864 36 H 0.396 0.604 37 H 0.135 0.865 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.626 -0.252 3.193 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.469 4.469 8 H 0.128 0.872 9 O -0.108 6.108 10 C 0.113 3.887 11 C -0.267 4.267 12 C 0.116 3.884 13 F -0.126 7.126 14 C -0.244 4.244 15 C -0.076 4.076 16 C -0.050 4.050 17 N -0.258 5.258 18 C 0.264 3.736 19 O -0.384 6.384 20 C 0.268 3.732 21 O -0.290 6.290 22 C -0.179 4.179 23 C -0.064 4.064 24 C -0.185 4.185 25 C 0.099 3.901 26 O -0.311 6.311 27 C -0.186 4.186 28 C -0.055 4.055 29 H 0.094 0.906 30 H 0.169 0.831 31 H 0.145 0.855 32 H 0.175 0.825 33 H 0.260 0.740 34 H 0.195 0.805 35 H 0.154 0.846 36 H 0.254 0.746 37 H 0.153 0.847 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 20.707 -0.068 2.645 20.876 hybrid contribution -0.430 0.947 0.436 1.127 sum 20.277 0.879 3.081 20.529 Atomic orbital electron populations 1.69621 1.05635 1.28975 1.45989 1.24486 0.95047 0.98919 0.95182 0.86250 0.80472 0.81348 0.79345 1.19440 1.20376 1.18156 1.20787 0.76166 0.96973 1.52940 0.87167 1.83502 1.23382 1.24803 1.79144 1.18458 0.89388 0.85977 0.94883 1.20969 1.02193 0.89966 1.13532 1.17533 0.89114 0.81318 1.00435 1.91436 1.77872 1.49371 1.93881 1.20586 0.91462 0.99155 1.13195 1.21029 1.01189 0.88882 0.96548 1.16959 0.87256 0.86180 1.14594 1.42987 1.10584 1.12089 1.60114 1.20638 0.83060 0.90591 0.79296 1.90418 1.68619 1.31227 1.48148 1.22308 0.87236 0.87872 0.75788 1.90634 1.70111 1.33551 1.34747 1.20078 0.94986 0.95019 1.07783 1.22400 0.93867 0.99971 0.90200 1.21335 0.95210 0.98197 1.03727 1.19008 0.83452 0.92546 0.95053 1.84711 1.23448 1.96086 1.26872 1.21123 0.95542 0.98080 1.03902 1.21060 0.93298 0.97853 0.93320 0.90618 0.83142 0.85491 0.82478 0.73973 0.80474 0.84583 0.74622 0.84695 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.73 13.96 55.48 0.77 -22.95 16 2 C 0.07 1.82 5.49 -17.51 -0.10 1.72 16 3 Si 0.90 20.23 28.62 -169.99 -4.86 15.36 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.39 -10.31 9.95 30.90 0.31 -10.00 16 8 H 0.11 2.97 5.44 -52.48 -0.29 2.69 16 9 O -0.20 -4.86 8.01 0.22 0.00 -4.86 16 10 C 0.17 3.58 6.67 -38.90 -0.26 3.32 16 11 C -0.25 -5.09 9.14 -39.36 -0.36 -5.45 16 12 C 0.14 2.53 7.29 -39.41 -0.29 2.24 16 13 F -0.15 -2.67 17.26 2.25 0.04 -2.64 16 14 C -0.22 -3.71 10.02 -39.49 -0.40 -4.11 16 15 C -0.06 -0.95 8.79 -39.41 -0.35 -1.30 16 16 C 0.04 0.83 6.47 -83.52 -0.54 0.28 16 17 N -0.61 -10.38 5.26 -10.23 -0.05 -10.43 16 18 C 0.48 7.20 7.72 -11.75 -0.09 7.11 16 19 O -0.51 -7.56 10.32 5.44 0.06 -7.51 16 20 C 0.39 5.40 7.16 -31.48 -0.23 5.18 16 21 O -0.42 -6.36 16.49 5.43 0.09 -6.27 16 22 C -0.18 -2.08 5.88 -104.90 -0.62 -2.70 16 23 C -0.05 -0.51 9.25 -39.47 -0.37 -0.87 16 24 C -0.17 -1.53 9.93 -39.83 -0.40 -1.92 16 25 C 0.14 1.27 6.72 -38.90 -0.26 1.01 16 26 O -0.50 -3.62 13.48 -18.59 -0.25 -3.87 16 27 C -0.17 -1.47 9.93 -39.83 -0.40 -1.86 16 28 C -0.04 -0.38 9.55 -39.47 -0.38 -0.75 16 29 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.15 3.28 5.63 -52.48 -0.30 2.98 16 31 H 0.13 1.78 8.06 -52.48 -0.42 1.35 16 32 H 0.16 2.43 5.52 -52.49 -0.29 2.14 16 33 H 0.42 7.17 7.83 -40.82 -0.32 6.85 16 34 H 0.18 2.02 4.82 -52.56 -0.25 1.77 16 35 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.40 0.91 9.06 45.56 0.41 1.33 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.14 1.31 7.66 -52.49 -0.40 0.90 16 LS Contribution 343.12 15.07 5.17 5.17 Total: -1.00 -29.20 343.12 -5.58 -34.78 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -1.84 Total: 11.34 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -4.71 Total: -8.12 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.72 Total: -33.38 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.10 Total: -22.52 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.86 Total: 15.36 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.20 -5.58 -34.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001622869627.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.436 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds