Wall clock time and date at job start Wed Apr 1 2020 03:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31543 * 1 3 3 Si 1.86793 * 119.99945 * 2 1 4 4 H 1.48506 * 109.47040 * 269.99901 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99928 * 3 2 1 6 6 H 1.48499 * 109.47037 * 149.99900 * 3 2 1 7 7 C 1.38684 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00048 * 359.97438 * 7 2 1 9 9 O 1.34780 * 119.99727 * 179.97438 * 7 2 1 10 10 C 1.35742 * 116.99876 * 185.03886 * 9 7 2 11 11 C 1.38733 * 120.09674 * 354.66365 * 10 9 7 12 12 C 1.38338 * 119.98629 * 180.32085 * 11 10 9 13 13 F 1.35094 * 119.91743 * 179.97438 * 12 11 10 14 14 C 1.38593 * 120.16806 * 359.92455 * 12 11 10 15 15 C 1.38135 * 120.19084 * 0.05260 * 14 12 11 16 16 C 1.38797 * 120.01512 * 359.97438 * 15 14 12 17 17 N 1.39799 * 120.08854 * 180.02562 * 16 15 14 18 18 C 1.34781 * 119.99369 * 334.38925 * 17 16 15 19 19 O 1.21413 * 120.00226 * 3.81706 * 18 17 16 20 20 C 1.49102 * 119.99373 * 183.81449 * 18 17 16 21 21 O 1.21429 * 120.00456 * 354.85933 * 20 18 17 22 22 C 1.47104 * 119.99609 * 174.85791 * 20 18 17 23 23 C 1.40100 * 120.11417 * 5.23952 * 22 20 18 24 24 C 1.36602 * 119.88449 * 179.78463 * 23 22 20 25 25 C 1.39159 * 120.11285 * 0.47096 * 24 23 22 26 26 O 1.35629 * 119.88224 * 179.75943 * 25 24 23 27 27 C 1.39156 * 120.22647 * 359.78696 * 25 24 23 28 28 C 1.36597 * 120.11859 * 359.97106 * 27 25 24 29 29 H 0.96994 * 120.00488 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.00883 * 0.24664 * 11 10 9 31 31 H 1.08004 * 119.90460 * 180.02562 * 14 12 11 32 32 H 1.07999 * 119.99266 * 179.97438 * 15 14 12 33 33 H 0.96992 * 120.00446 * 154.38541 * 17 16 15 34 34 H 1.08004 * 120.06187 * 0.02562 * 23 22 20 35 35 H 1.08000 * 119.94141 * 180.20785 * 24 23 22 36 36 H 0.96703 * 114.00167 * 270.01789 * 26 25 24 37 37 H 1.07997 * 119.93739 * 179.97438 * 27 25 24 38 38 H 1.07993 * 120.05727 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4969 2.0464 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5469 1.4401 0.7001 7 6 2.0088 -1.2011 -0.0005 8 1 1.4687 -2.1364 -0.0005 9 8 3.3566 -1.2011 -0.0011 10 6 3.9728 -2.4059 -0.1078 11 6 3.2237 -3.5736 -0.0987 12 6 3.8546 -4.8005 -0.2009 13 9 3.1239 -5.9367 -0.1913 14 6 5.2343 -4.8669 -0.3142 15 6 5.9870 -3.7087 -0.3245 16 6 5.3621 -2.4736 -0.2218 17 7 6.1224 -1.3005 -0.2326 18 6 7.4084 -1.3272 0.1700 19 8 7.9269 -2.3816 0.4760 20 6 8.1942 -0.0620 0.2394 21 8 7.7066 0.9780 -0.1545 22 6 9.5601 -0.0736 0.7853 23 6 10.1656 -1.2866 1.1385 24 6 11.4359 -1.2923 1.6409 25 6 12.1247 -0.0952 1.8112 26 8 13.3840 -0.1060 2.3150 27 6 11.5258 1.1127 1.4670 28 6 10.2578 1.1289 0.9592 29 1 -0.4850 0.8400 0.0004 30 1 2.1484 -3.5249 -0.0105 31 1 5.7224 -5.8271 -0.3941 32 1 7.0620 -3.7642 -0.4125 33 1 5.7245 -0.4674 -0.5299 34 1 9.6305 -2.2160 1.0102 35 1 11.9048 -2.2272 1.9103 36 1 13.4226 -0.0378 3.2788 37 1 12.0645 2.0390 1.6015 38 1 9.7938 2.0670 0.6928 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001622869627.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:25 Heat of formation + Delta-G solvation = -124.525372 kcal Electronic energy + Delta-G solvation = -28627.149787 eV Core-core repulsion = 24122.795415 eV Total energy + Delta-G solvation = -4504.354372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.089 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.88411 -42.36517 -41.20884 -40.39052 -39.70097 -38.19914 -37.58713 -35.87603 -34.52901 -32.28244 -31.50132 -31.25833 -30.43544 -27.51114 -26.81638 -24.48810 -23.95233 -23.48425 -22.80820 -21.28355 -20.25565 -19.83229 -19.46606 -18.99743 -18.63431 -17.63854 -17.34556 -17.10281 -16.96787 -16.63310 -16.44770 -16.39185 -15.91988 -15.80908 -15.68969 -15.42175 -15.29693 -15.10544 -14.93245 -14.59749 -14.28718 -13.90846 -13.79227 -13.62576 -13.21051 -13.15586 -13.13936 -12.71408 -12.58447 -12.28529 -12.23780 -11.69016 -11.48782 -11.44703 -10.98043 -10.44567 -10.16522 -9.77874 -9.68490 -8.93468 -8.56855 -6.30592 -0.93071 -0.01572 0.34947 0.36771 0.54230 1.30315 1.33468 1.42218 1.48566 1.78577 2.21591 2.54453 2.64782 2.70917 2.87188 2.95276 3.17950 3.32922 3.55102 3.84609 3.85941 3.96659 4.11127 4.17972 4.27853 4.38196 4.41281 4.69132 4.78611 5.00875 5.04073 5.12848 5.15795 5.19326 5.25228 5.28012 5.38476 5.52413 5.71226 5.73050 5.77988 6.01044 6.15243 6.64474 6.75302 6.78939 7.37351 8.53900 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.003239 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.160179 B = 8641.634164 C =10976.403666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.020 3.980 3 Si 0.961 3.039 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.402 4.402 8 H 0.085 0.915 9 O -0.223 6.223 10 C 0.141 3.859 11 C -0.257 4.257 12 C 0.125 3.875 13 F -0.144 7.144 14 C -0.190 4.190 15 C -0.054 4.054 16 C 0.057 3.943 17 N -0.626 5.626 18 C 0.484 3.516 19 O -0.500 6.500 20 C 0.403 3.597 21 O -0.439 6.439 22 C -0.198 4.198 23 C -0.050 4.050 24 C -0.169 4.169 25 C 0.157 3.843 26 O -0.505 6.505 27 C -0.167 4.167 28 C -0.038 4.038 29 H 0.287 0.713 30 H 0.128 0.872 31 H 0.167 0.833 32 H 0.181 0.819 33 H 0.421 0.579 34 H 0.171 0.829 35 H 0.155 0.845 36 H 0.420 0.580 37 H 0.158 0.842 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.999 -0.568 3.703 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.180 4.180 3 Si 0.783 3.217 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.478 4.478 8 H 0.103 0.897 9 O -0.129 6.129 10 C 0.089 3.911 11 C -0.277 4.277 12 C 0.105 3.895 13 F -0.123 7.123 14 C -0.210 4.210 15 C -0.074 4.074 16 C -0.037 4.037 17 N -0.270 5.270 18 C 0.270 3.730 19 O -0.377 6.377 20 C 0.278 3.722 21 O -0.313 6.313 22 C -0.200 4.200 23 C -0.067 4.067 24 C -0.187 4.187 25 C 0.112 3.888 26 O -0.320 6.320 27 C -0.186 4.186 28 C -0.057 4.057 29 H 0.097 0.903 30 H 0.146 0.854 31 H 0.185 0.815 32 H 0.198 0.802 33 H 0.259 0.741 34 H 0.188 0.812 35 H 0.172 0.828 36 H 0.282 0.718 37 H 0.175 0.825 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 25.138 -0.431 3.182 25.342 hybrid contribution -1.418 0.761 0.328 1.642 sum 23.720 0.330 3.510 23.981 Atomic orbital electron populations 1.69704 1.06995 1.29904 1.48715 1.25223 0.95760 1.01987 0.95065 0.85357 0.79135 0.77570 0.79665 1.18640 1.19388 1.18122 1.20674 0.77464 0.96333 1.53343 0.89725 1.83463 1.21770 1.25851 1.81857 1.18831 0.90627 0.85504 0.96136 1.20967 1.01417 0.91280 1.14066 1.17592 0.90041 0.80582 1.01268 1.91444 1.78053 1.48886 1.93915 1.21037 0.90219 1.00823 1.08901 1.21363 1.02195 0.88013 0.95781 1.17181 0.86382 0.87675 1.12503 1.43104 1.11223 1.11526 1.61133 1.21015 0.82306 0.91414 0.78286 1.90410 1.68467 1.31433 1.47420 1.22321 0.87788 0.86731 0.75379 1.90631 1.70709 1.33843 1.36156 1.19994 0.94069 0.96203 1.09713 1.22299 0.94604 0.99181 0.90647 1.21513 0.94629 0.99336 1.03262 1.19078 0.83590 0.92312 0.93799 1.84656 1.22293 1.95980 1.29070 1.21358 0.94987 0.99174 1.03042 1.21170 0.93871 0.97435 0.93179 0.90292 0.85410 0.81543 0.80250 0.74147 0.81216 0.82766 0.71818 0.82479 0.83950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.56 13.96 21.62 0.30 -52.26 16 2 C 0.02 1.09 5.49 84.84 0.47 1.56 16 3 Si 0.96 42.88 28.62 68.60 1.96 44.84 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.40 -22.31 9.95 67.93 0.68 -21.64 16 8 H 0.09 4.97 5.44 -2.91 -0.02 4.95 16 9 O -0.22 -11.06 8.01 -22.14 -0.18 -11.23 16 10 C 0.14 6.16 6.67 22.71 0.15 6.31 16 11 C -0.26 -10.98 9.14 22.41 0.20 -10.78 16 12 C 0.13 4.53 7.29 22.38 0.16 4.69 16 13 F -0.14 -5.11 17.26 44.97 0.78 -4.33 16 14 C -0.19 -5.69 10.02 22.33 0.22 -5.46 16 15 C -0.05 -1.66 8.79 22.38 0.20 -1.47 16 16 C 0.06 2.09 6.47 38.33 0.25 2.33 16 17 N -0.63 -20.73 5.26 -304.60 -1.60 -22.34 16 18 C 0.48 13.88 7.72 87.16 0.67 14.55 16 19 O -0.50 -13.78 10.32 -3.44 -0.04 -13.82 16 20 C 0.40 10.61 7.16 27.52 0.20 10.80 16 21 O -0.44 -13.12 16.49 -3.49 -0.06 -13.18 16 22 C -0.20 -4.32 5.88 -20.04 -0.12 -4.43 16 23 C -0.05 -0.96 9.25 22.34 0.21 -0.75 16 24 C -0.17 -2.58 9.93 22.11 0.22 -2.36 16 25 C 0.16 2.21 6.72 22.71 0.15 2.37 16 26 O -0.50 -5.29 13.48 -89.42 -1.21 -6.50 16 27 C -0.17 -2.39 9.93 22.11 0.22 -2.17 16 28 C -0.04 -0.70 9.55 22.34 0.21 -0.48 16 29 H 0.29 15.17 8.31 -92.71 -0.77 14.39 16 30 H 0.13 6.03 5.63 -2.91 -0.02 6.01 16 31 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 32 H 0.18 4.84 5.52 -2.91 -0.02 4.82 16 33 H 0.42 14.33 7.83 -92.71 -0.73 13.60 16 34 H 0.17 3.48 4.82 -4.16 -0.02 3.46 16 35 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.42 0.17 9.06 -74.06 -0.67 -0.50 16 37 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.14 2.44 7.66 -2.91 -0.02 2.42 16 Total: -1.00 -65.29 343.12 3.85 -61.44 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -0.21 Total: 24.30 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 4.09 Total: -6.93 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -1.30 Total: -74.60 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -1.48 Total: -44.72 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.78 Total: -4.33 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.96 Total: 44.84 kcal Total: -65.29 3.85 -61.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001622869627.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.081 kcal (2) G-P(sol) polarization free energy of solvation -65.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds