Wall clock time and date at job start Wed Apr 1 2020 03:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29395 * 1 3 3 Si 1.86796 * 120.00045 * 2 1 4 4 H 1.48494 * 109.47103 * 239.99905 * 3 2 1 5 5 H 1.48500 * 109.47468 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46933 * 120.00106 * 3 2 1 7 7 C 1.46591 * 119.99627 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99968 * 180.02562 * 7 2 1 9 9 O 1.22296 * 120.00399 * 359.97438 * 7 2 1 10 10 C 1.35696 * 117.00343 * 185.51007 * 9 7 2 11 11 C 1.38988 * 120.00180 * 186.58113 * 10 9 7 12 12 C 1.37946 * 120.00224 * 180.27253 * 11 10 9 13 13 C 1.38992 * 119.99762 * 359.45324 * 12 11 10 14 14 N 1.39783 * 119.99973 * 180.29248 * 13 12 11 15 15 C 1.34774 * 119.99913 * 34.08727 * 14 13 12 16 16 O 1.21594 * 120.00106 * 5.18962 * 15 14 13 17 17 C 1.47593 * 120.00060 * 185.18516 * 15 14 13 18 18 C 1.39574 * 120.49514 * 0.02562 * 17 15 14 19 19 N 1.31641 * 120.62038 * 179.97438 * 18 17 15 20 20 C 1.32442 * 121.80085 * 0.02562 * 19 18 17 21 21 O 1.35496 * 119.52398 * 180.02562 * 20 19 18 22 22 C 1.39129 * 120.95121 * 0.02562 * 20 19 18 23 23 N 1.48015 * 120.36583 * 180.02562 * 22 20 19 24 24 O 1.31693 * 120.00230 * 179.97438 * 23 22 20 25 25 O 1.31702 * 119.99880 * 0.02562 * 23 22 20 26 26 C 1.37991 * 119.26607 * 359.71450 * 22 20 19 27 27 C 1.39001 * 119.99919 * 0.27343 * 13 12 11 28 28 C 1.37939 * 119.99725 * 0.02562 * 27 13 12 29 29 H 0.96999 * 119.99587 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00018 * 0.02670 * 11 10 9 31 31 H 1.07998 * 120.00131 * 179.72006 * 12 11 10 32 32 H 0.97003 * 119.99978 * 214.07847 * 14 13 12 33 33 H 1.07994 * 119.69531 * 359.97438 * 18 17 15 34 34 H 0.96699 * 113.99919 * 90.00215 * 21 20 19 35 35 H 1.08002 * 120.82106 * 180.27160 * 26 22 20 36 36 H 1.07997 * 120.00085 * 180.02562 * 27 13 12 37 37 H 1.08001 * 120.00251 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2940 0.0000 0.0000 3 14 2.2279 1.6177 0.0000 4 1 3.0817 1.6963 -1.2124 5 1 1.2630 2.7465 -0.0006 6 1 3.0817 1.6963 1.2126 7 6 2.0268 -1.2696 -0.0006 8 1 3.1069 -1.2696 -0.0001 9 8 1.4154 -2.3287 -0.0006 10 6 2.1496 -3.4640 0.1150 11 6 1.5363 -4.7045 -0.0150 12 6 2.2816 -5.8587 0.1080 13 6 3.6480 -5.7810 0.3507 14 7 4.4044 -6.9505 0.4694 15 6 4.0877 -8.0353 -0.2651 16 8 3.2049 -7.9685 -1.0987 17 6 4.8124 -9.3042 -0.0577 18 6 5.8271 -9.3925 0.8965 19 7 6.4747 -10.5232 1.0839 20 6 6.1953 -11.6119 0.3834 21 8 6.8908 -12.7515 0.6147 22 6 5.1979 -11.6023 -0.5865 23 7 4.8959 -12.8267 -1.3614 24 8 3.9500 -12.8097 -2.2775 25 8 5.5726 -13.9335 -1.1341 26 6 4.4889 -10.4405 -0.8136 27 6 4.2623 -4.5403 0.4751 28 6 3.5158 -3.3863 0.3582 29 1 -0.4849 0.8401 -0.0004 30 1 0.4755 -4.7648 -0.2085 31 1 1.8043 -6.8226 0.0115 32 1 5.1573 -6.9813 1.0802 33 1 6.0834 -8.5252 1.4868 34 1 6.4986 -13.3214 1.2904 35 1 3.7064 -10.4060 -1.5572 36 1 5.3241 -4.4799 0.6633 37 1 3.9931 -2.4223 0.4544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001628165922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:10 Heat of formation + Delta-G solvation = 37.977343 kcal Electronic energy + Delta-G solvation = -27819.703343 eV Core-core repulsion = 23342.315579 eV Total energy + Delta-G solvation = -4477.387764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.088 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -42.00715 -40.41475 -39.91532 -39.01260 -38.06302 -37.05003 -34.81497 -34.45776 -33.75408 -32.77407 -31.91124 -30.21512 -28.35066 -27.43228 -25.66554 -24.79751 -24.11408 -22.33807 -21.93737 -20.67628 -19.99348 -19.18822 -18.97019 -18.42370 -17.84262 -17.66165 -17.32575 -17.14246 -16.31249 -16.05010 -15.40637 -15.08407 -14.83581 -14.56535 -14.44313 -14.35390 -14.18096 -13.84881 -13.50518 -13.00377 -12.83782 -12.56248 -12.22777 -11.80997 -11.77414 -11.75720 -11.74863 -11.27889 -11.20568 -11.06718 -10.91590 -10.80987 -10.60218 -10.17631 -10.14216 -9.72628 -9.33254 -9.04097 -8.20877 -7.14599 -6.91374 -3.76758 -1.33769 -0.38917 0.29795 0.47689 1.83314 2.19293 2.25991 2.40505 2.75086 2.92386 2.95480 2.97330 3.06027 3.28295 3.62725 3.73252 3.74672 3.86675 4.14455 4.36678 4.63639 4.85864 4.91841 4.95962 5.08886 5.30512 5.54946 5.74958 6.04291 6.22333 6.22718 6.23788 6.36594 6.61894 6.69855 6.80519 6.90188 6.96723 7.18690 7.31300 7.49350 7.67636 7.77811 8.06645 8.49876 9.83768 10.30659 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.031967 B = 0.001839 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.684245 B =15224.746358 C =15851.294670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.039 3.961 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.402 4.402 8 H 0.089 0.911 9 O -0.105 6.105 10 C 0.103 3.897 11 C -0.185 4.185 12 C -0.056 4.056 13 C -0.008 4.008 14 N -0.637 5.637 15 C 0.548 3.452 16 O -0.509 6.509 17 C -0.183 4.183 18 C 0.209 3.791 19 N -0.487 5.487 20 C 0.411 3.589 21 O -0.452 6.452 22 C -0.083 4.083 23 N -0.015 5.015 24 O -0.165 6.165 25 O -0.138 6.138 26 C 0.061 3.939 27 C -0.069 4.069 28 C -0.238 4.238 29 H 0.286 0.714 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.398 0.602 33 H 0.189 0.811 34 H 0.421 0.579 35 H 0.186 0.814 36 H 0.107 0.893 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.682 -16.697 5.016 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.175 4.175 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.480 4.480 8 H 0.106 0.894 9 O 0.000 6.000 10 C 0.046 3.954 11 C -0.205 4.205 12 C -0.076 4.076 13 C -0.101 4.101 14 N -0.281 5.281 15 C 0.334 3.666 16 O -0.385 6.385 17 C -0.190 4.190 18 C 0.051 3.949 19 N -0.206 5.206 20 C 0.229 3.771 21 O -0.262 6.262 22 C -0.174 4.174 23 N 0.466 4.534 24 O -0.356 6.356 25 O -0.337 6.337 26 C 0.035 3.965 27 C -0.089 4.089 28 C -0.259 4.259 29 H 0.098 0.902 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.233 0.767 33 H 0.206 0.794 34 H 0.285 0.715 35 H 0.203 0.797 36 H 0.125 0.875 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.676 -15.741 4.924 20.207 hybrid contribution 0.072 0.274 -0.154 0.323 sum 11.748 -15.467 4.770 19.999 Atomic orbital electron populations 1.68917 1.07868 1.29906 1.37473 1.26903 0.95195 0.98847 0.96534 0.85697 0.79134 0.78472 0.79907 1.18934 1.19968 1.18949 1.20797 0.92908 0.82697 1.51579 0.89426 1.80354 1.36973 1.11922 1.70794 1.19408 0.90453 0.86846 0.98666 1.19870 0.99701 0.89426 1.11526 1.20424 0.91487 0.97540 0.98140 1.16939 0.90687 0.83735 1.18701 1.42910 1.32496 1.11366 1.41345 1.17518 0.84253 0.82769 0.82105 1.90880 1.31055 1.83597 1.32978 1.21191 1.01442 0.96064 1.00290 1.23442 0.86411 0.94577 0.90496 1.67770 1.27536 0.99170 1.26162 1.19125 0.82933 0.88304 0.86762 1.84759 1.50798 1.27951 1.62680 1.21598 1.04791 0.87166 1.03812 1.50088 1.00244 1.02793 1.00272 1.96345 1.21801 1.93054 1.24439 1.96305 1.47963 1.16949 1.72533 1.21700 0.93785 0.87274 0.93785 1.20307 0.97774 0.90691 1.00175 1.20577 0.94211 0.97946 1.13143 0.90246 0.86555 0.86325 0.76690 0.79442 0.71539 0.79693 0.87538 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.43 13.66 55.99 0.76 -20.67 16 2 C 0.04 0.98 5.69 -15.21 -0.09 0.89 16 3 Si 0.94 18.44 29.64 -169.99 -5.04 13.40 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.40 -10.37 9.43 34.10 0.32 -10.05 16 8 H 0.09 2.10 5.11 -52.48 -0.27 1.84 16 9 O -0.10 -2.80 9.28 21.09 0.20 -2.60 16 10 C 0.10 2.38 6.59 -39.02 -0.26 2.13 16 11 C -0.19 -3.91 9.99 -39.41 -0.39 -4.30 16 12 C -0.06 -1.04 8.64 -39.41 -0.34 -1.38 16 13 C -0.01 -0.14 6.27 -83.67 -0.52 -0.66 16 14 N -0.64 -7.36 5.28 -10.75 -0.06 -7.42 16 15 C 0.55 6.63 7.50 -12.44 -0.09 6.53 16 16 O -0.51 -8.31 14.14 5.28 0.07 -8.23 16 17 C -0.18 -1.56 5.89 -104.83 -0.62 -2.18 16 18 C 0.21 1.28 10.71 -17.14 -0.18 1.10 16 19 N -0.49 -3.60 10.37 -12.96 -0.13 -3.74 16 20 C 0.41 3.29 7.73 -16.96 -0.13 3.15 16 21 O -0.45 -3.10 11.48 -40.28 -0.46 -3.57 16 22 C -0.08 -0.77 6.92 -79.71 -0.55 -1.32 16 23 N -0.02 -0.17 4.98 34.08 0.17 0.00 16 24 O -0.17 -2.16 19.22 -31.56 -0.61 -2.76 16 25 O -0.14 -1.61 17.91 -39.21 -0.70 -2.31 16 26 C 0.06 0.56 9.22 -38.92 -0.36 0.20 16 27 C -0.07 -1.17 9.96 -39.41 -0.39 -1.56 16 28 C -0.24 -4.86 9.06 -39.41 -0.36 -5.22 16 29 H 0.29 6.77 8.26 -40.82 -0.34 6.43 16 30 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 31 H 0.12 2.13 6.46 -52.49 -0.34 1.79 16 32 H 0.40 2.83 6.89 -40.82 -0.28 2.55 16 33 H 0.19 0.49 6.42 -52.49 -0.34 0.15 16 34 H 0.42 0.85 9.06 45.56 0.41 1.27 16 35 H 0.19 1.78 7.33 -52.49 -0.38 1.39 16 36 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.13 2.52 5.78 -52.49 -0.30 2.22 16 LS Contribution 342.30 15.07 5.16 5.16 Total: -1.00 -32.82 342.30 -6.08 -38.90 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -1.48 Total: 6.52 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -3.97 Total: -12.67 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.74 Total: -31.83 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -1.50 Total: -19.48 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.04 Total: 13.40 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.82 -6.08 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628165922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.881 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds