Wall clock time and date at job start Wed Apr 1 2020 03:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29395 * 1 3 3 Si 1.86796 * 120.00045 * 2 1 4 4 H 1.48494 * 109.47103 * 239.99905 * 3 2 1 5 5 H 1.48500 * 109.47468 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46933 * 120.00106 * 3 2 1 7 7 C 1.46591 * 119.99627 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99968 * 180.02562 * 7 2 1 9 9 O 1.22296 * 120.00399 * 359.97438 * 7 2 1 10 10 C 1.35696 * 117.00343 * 185.51007 * 9 7 2 11 11 C 1.38988 * 120.00180 * 186.58113 * 10 9 7 12 12 C 1.37946 * 120.00224 * 180.27253 * 11 10 9 13 13 C 1.38992 * 119.99762 * 359.45324 * 12 11 10 14 14 N 1.39783 * 119.99973 * 180.29248 * 13 12 11 15 15 C 1.34774 * 119.99913 * 34.08727 * 14 13 12 16 16 O 1.21594 * 120.00106 * 5.18962 * 15 14 13 17 17 C 1.47593 * 120.00060 * 185.18516 * 15 14 13 18 18 C 1.39574 * 120.49514 * 0.02562 * 17 15 14 19 19 N 1.31641 * 120.62038 * 179.97438 * 18 17 15 20 20 C 1.32442 * 121.80085 * 0.02562 * 19 18 17 21 21 O 1.35496 * 119.52398 * 180.02562 * 20 19 18 22 22 C 1.39129 * 120.95121 * 0.02562 * 20 19 18 23 23 N 1.48015 * 120.36583 * 180.02562 * 22 20 19 24 24 O 1.31693 * 120.00230 * 179.97438 * 23 22 20 25 25 O 1.31702 * 119.99880 * 0.02562 * 23 22 20 26 26 C 1.37991 * 119.26607 * 359.71450 * 22 20 19 27 27 C 1.39001 * 119.99919 * 0.27343 * 13 12 11 28 28 C 1.37939 * 119.99725 * 0.02562 * 27 13 12 29 29 H 0.96999 * 119.99587 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00018 * 0.02670 * 11 10 9 31 31 H 1.07998 * 120.00131 * 179.72006 * 12 11 10 32 32 H 0.97003 * 119.99978 * 214.07847 * 14 13 12 33 33 H 1.07994 * 119.69531 * 359.97438 * 18 17 15 34 34 H 0.96699 * 113.99919 * 90.00215 * 21 20 19 35 35 H 1.08002 * 120.82106 * 180.27160 * 26 22 20 36 36 H 1.07997 * 120.00085 * 180.02562 * 27 13 12 37 37 H 1.08001 * 120.00251 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2940 0.0000 0.0000 3 14 2.2279 1.6177 0.0000 4 1 3.0817 1.6963 -1.2124 5 1 1.2630 2.7465 -0.0006 6 1 3.0817 1.6963 1.2126 7 6 2.0268 -1.2696 -0.0006 8 1 3.1069 -1.2696 -0.0001 9 8 1.4154 -2.3287 -0.0006 10 6 2.1496 -3.4640 0.1150 11 6 1.5363 -4.7045 -0.0150 12 6 2.2816 -5.8587 0.1080 13 6 3.6480 -5.7810 0.3507 14 7 4.4044 -6.9505 0.4694 15 6 4.0877 -8.0353 -0.2651 16 8 3.2049 -7.9685 -1.0987 17 6 4.8124 -9.3042 -0.0577 18 6 5.8271 -9.3925 0.8965 19 7 6.4747 -10.5232 1.0839 20 6 6.1953 -11.6119 0.3834 21 8 6.8908 -12.7515 0.6147 22 6 5.1979 -11.6023 -0.5865 23 7 4.8959 -12.8267 -1.3614 24 8 3.9500 -12.8097 -2.2775 25 8 5.5726 -13.9335 -1.1341 26 6 4.4889 -10.4405 -0.8136 27 6 4.2623 -4.5403 0.4751 28 6 3.5158 -3.3863 0.3582 29 1 -0.4849 0.8401 -0.0004 30 1 0.4755 -4.7648 -0.2085 31 1 1.8043 -6.8226 0.0115 32 1 5.1573 -6.9813 1.0802 33 1 6.0834 -8.5252 1.4868 34 1 6.4986 -13.3214 1.2904 35 1 3.7064 -10.4060 -1.5572 36 1 5.3241 -4.4799 0.6633 37 1 3.9931 -2.4223 0.4544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001628165922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:09 Heat of formation + Delta-G solvation = 12.529822 kcal Electronic energy + Delta-G solvation = -27820.806831 eV Core-core repulsion = 23342.315579 eV Total energy + Delta-G solvation = -4478.491251 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.088 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.74151 -41.94494 -41.16269 -39.86386 -38.88597 -38.33838 -35.78589 -35.64903 -34.49866 -34.45364 -32.76131 -31.80792 -29.78351 -28.25154 -27.17519 -25.85342 -24.83367 -23.85802 -23.23689 -21.95291 -20.65319 -20.32387 -19.93058 -19.68444 -19.20564 -18.75586 -18.35427 -17.89178 -17.33440 -16.86387 -16.53018 -16.44763 -16.20123 -16.10703 -15.82813 -15.51715 -15.07620 -14.81457 -14.59661 -14.45629 -14.10672 -13.82871 -13.43821 -13.31040 -13.28011 -12.69725 -12.67790 -12.64184 -12.40089 -12.12390 -12.01738 -11.97542 -11.67995 -11.27885 -11.14705 -10.97879 -10.88160 -10.65865 -9.78013 -8.71050 -8.62394 -5.64976 -2.13852 -1.11528 -0.43326 -0.30741 0.51509 0.63864 1.27550 1.37384 1.48572 1.51218 1.73687 1.75045 2.08983 2.17842 2.63600 2.71952 2.87401 3.07278 3.21736 3.23476 3.43323 3.45039 3.90917 4.11430 4.18301 4.19396 4.26598 4.56142 4.60823 4.69837 4.76627 5.02517 5.26681 5.30993 5.31732 5.46582 5.61238 5.65266 5.81363 5.97085 6.20410 6.21087 6.36998 6.76427 7.00596 8.15758 8.64945 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.031967 B = 0.001839 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.684245 B =15224.746358 C =15851.294670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C -0.020 4.020 3 Si 1.017 2.983 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.439 4.439 8 H 0.095 0.905 9 O -0.164 6.164 10 C 0.082 3.918 11 C -0.202 4.202 12 C -0.063 4.063 13 C 0.035 3.965 14 N -0.627 5.627 15 C 0.560 3.440 16 O -0.552 6.552 17 C -0.188 4.188 18 C 0.243 3.757 19 N -0.488 5.488 20 C 0.434 3.566 21 O -0.458 6.458 22 C -0.096 4.096 23 N -0.011 5.011 24 O -0.224 6.224 25 O -0.124 6.124 26 C 0.065 3.935 27 C -0.062 4.062 28 C -0.240 4.240 29 H 0.287 0.713 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.427 0.573 33 H 0.234 0.766 34 H 0.443 0.557 35 H 0.173 0.827 36 H 0.161 0.839 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.371 -18.804 6.969 25.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.226 4.226 3 Si 0.836 3.164 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.518 4.518 8 H 0.112 0.888 9 O -0.064 6.064 10 C 0.029 3.971 11 C -0.222 4.222 12 C -0.083 4.083 13 C -0.059 4.059 14 N -0.274 5.274 15 C 0.348 3.652 16 O -0.430 6.430 17 C -0.194 4.194 18 C 0.085 3.915 19 N -0.208 5.208 20 C 0.252 3.748 21 O -0.272 6.272 22 C -0.188 4.188 23 N 0.466 4.534 24 O -0.402 6.402 25 O -0.331 6.331 26 C 0.039 3.961 27 C -0.081 4.081 28 C -0.260 4.260 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.145 0.855 32 H 0.268 0.732 33 H 0.250 0.750 34 H 0.311 0.689 35 H 0.190 0.810 36 H 0.178 0.822 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 16.351 -17.921 6.850 25.208 hybrid contribution -1.002 0.175 -0.626 1.194 sum 15.349 -17.746 6.224 24.275 Atomic orbital electron populations 1.69027 1.09661 1.30669 1.41830 1.28061 0.96141 1.02094 0.96255 0.84657 0.77766 0.73744 0.80225 1.18304 1.19414 1.17773 1.21112 0.93312 0.83232 1.54104 0.88832 1.80355 1.37969 1.12759 1.75312 1.20015 0.91945 0.86929 0.98216 1.20068 0.99970 0.90003 1.12137 1.20628 0.92816 0.96873 0.97970 1.17064 0.90065 0.85666 1.13070 1.42721 1.32900 1.09543 1.42245 1.17874 0.83132 0.83453 0.80783 1.90894 1.32975 1.84345 1.34813 1.20716 1.02735 0.93882 1.02091 1.24085 0.83733 0.95249 0.88413 1.68013 1.27653 0.99185 1.25932 1.19232 0.81274 0.88954 0.85330 1.84702 1.50727 1.28004 1.63752 1.21665 1.06152 0.86281 1.04701 1.50332 0.99686 1.03314 1.00043 1.96363 1.23686 1.93504 1.26663 1.96274 1.47178 1.17776 1.71833 1.21645 0.93327 0.87730 0.93443 1.20751 1.00073 0.89069 0.98238 1.20865 0.93239 0.99729 1.12202 0.90197 0.87474 0.85475 0.73237 0.75020 0.68851 0.80964 0.82196 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.08 13.66 23.22 0.32 -49.77 16 2 C -0.02 -1.05 5.69 87.23 0.50 -0.55 16 3 Si 1.02 39.45 29.64 68.60 2.03 41.48 16 4 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 6 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 7 C -0.44 -24.14 9.43 70.00 0.66 -23.48 16 8 H 0.09 4.70 5.11 -2.91 -0.01 4.69 16 9 O -0.16 -9.39 9.28 52.54 0.49 -8.91 16 10 C 0.08 3.90 6.59 22.63 0.15 4.05 16 11 C -0.20 -8.74 9.99 22.38 0.22 -8.52 16 12 C -0.06 -2.25 8.64 22.38 0.19 -2.05 16 13 C 0.03 0.99 6.27 38.24 0.24 1.23 16 14 N -0.63 -10.89 5.28 -306.19 -1.62 -12.51 16 15 C 0.56 11.24 7.50 86.71 0.65 11.89 16 16 O -0.55 -16.81 14.14 -4.01 -0.06 -16.86 16 17 C -0.19 -2.38 5.89 -20.00 -0.12 -2.50 16 18 C 0.24 1.45 10.71 85.04 0.91 2.36 16 19 N -0.49 -4.48 10.37 -307.79 -3.19 -7.68 16 20 C 0.43 5.13 7.73 84.81 0.66 5.78 16 21 O -0.46 -4.41 11.48 -66.84 -0.77 -5.17 16 22 C -0.10 -1.55 6.92 36.53 0.25 -1.29 16 23 N -0.01 -0.23 4.98 -46.09 -0.23 -0.46 16 24 O -0.22 -6.02 19.22 3.53 0.07 -5.95 16 25 O -0.12 -2.64 17.91 10.82 0.19 -2.45 16 26 C 0.07 1.05 9.22 22.70 0.21 1.25 16 27 C -0.06 -1.79 9.96 22.38 0.22 -1.57 16 28 C -0.24 -9.51 9.06 22.38 0.20 -9.31 16 29 H 0.29 14.74 8.26 -92.71 -0.77 13.98 16 30 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 31 H 0.13 4.37 6.46 -2.91 -0.02 4.35 16 32 H 0.43 2.77 6.89 -92.71 -0.64 2.13 16 33 H 0.23 -0.78 6.42 -2.91 -0.02 -0.79 16 34 H 0.44 -0.07 9.06 -74.06 -0.67 -0.74 16 35 H 0.17 3.26 7.33 -2.91 -0.02 3.24 16 36 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 37 H 0.13 5.03 5.78 -2.91 -0.02 5.01 16 Total: -1.00 -80.07 342.30 2.09 -77.98 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -0.09 Total: 12.99 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 4.95 Total: -22.69 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -4.72 Total: -70.41 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.07 Total: -39.35 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -80.07 2.09 -77.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628165922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.509 kcal (2) G-P(sol) polarization free energy of solvation -80.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds