Wall clock time and date at job start Wed Apr 1 2020 03:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42101 * 108.57659 * 2 1 4 4 O 1.42098 * 108.58037 * 228.97311 * 2 1 3 5 5 C 1.81401 * 101.91981 * 114.48304 * 2 1 3 6 6 C 1.52996 * 109.47132 * 184.87588 * 5 2 1 7 7 C 1.50698 * 112.99855 * 295.39430 * 6 5 2 8 8 O 1.21274 * 119.99962 * 341.36314 * 7 6 5 9 9 N 1.34778 * 119.99939 * 161.09062 * 7 6 5 10 10 C 1.46503 * 120.00193 * 180.27476 * 9 7 6 11 11 H 1.09000 * 109.47103 * 325.00124 * 10 9 7 12 12 C 1.50695 * 109.47362 * 204.99947 * 10 9 7 13 13 H 1.08008 * 119.99771 * 359.97438 * 12 10 9 14 14 C 1.37875 * 120.00139 * 179.97438 * 12 10 9 15 15 N 1.31515 * 120.00081 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 120.00124 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46869 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46707 * 119.99872 * 16 14 12 19 19 H 1.48492 * 109.47095 * 240.00023 * 16 14 12 20 20 C 1.53005 * 109.47140 * 84.99796 * 10 9 7 21 21 F 1.39899 * 109.46800 * 59.99969 * 20 10 9 22 22 F 1.39898 * 109.46946 * 180.02562 * 20 10 9 23 23 F 1.39896 * 109.46845 * 300.00292 * 20 10 9 24 24 C 1.54041 * 113.92873 * 67.32398 * 6 5 2 25 25 O 1.44173 * 85.51789 * 136.81863 * 24 6 5 26 26 C 1.44176 * 93.34212 * 335.80978 * 25 24 6 27 27 H 1.08999 * 109.47233 * 305.51760 * 1 2 3 28 28 H 1.09000 * 109.46978 * 65.51568 * 1 2 3 29 29 H 1.08998 * 109.47296 * 185.51884 * 1 2 3 30 30 H 1.08990 * 109.47172 * 64.87657 * 5 2 1 31 31 H 1.09000 * 109.47151 * 304.87316 * 5 2 1 32 32 H 0.97008 * 120.00059 * 0.27011 * 9 7 6 33 33 H 0.96999 * 119.99967 * 180.02562 * 15 14 12 34 34 H 1.08999 * 113.86719 * 250.96778 * 24 6 5 35 35 H 1.09002 * 113.86124 * 22.67333 * 24 6 5 36 36 H 1.09001 * 113.86744 * 270.04478 * 26 25 24 37 37 H 1.09002 * 113.87138 * 138.34145 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7003 -0.7078 1.8501 7 6 4.4637 -1.5646 0.8734 8 8 3.8892 -2.4310 0.2489 9 7 5.7838 -1.3644 0.6898 10 6 6.5248 -2.1934 -0.2641 11 1 6.1206 -3.2056 -0.2565 12 6 7.9797 -2.2305 0.1267 13 1 8.3186 -1.6902 0.9984 14 6 8.8781 -2.9542 -0.6283 15 7 8.4655 -3.6116 -1.6900 16 14 10.6818 -2.9996 -0.1442 17 1 10.8866 -2.1833 1.0793 18 1 11.0870 -4.4029 0.1240 19 1 11.5053 -2.4494 -1.2506 20 6 6.3888 -1.6006 -1.6681 21 9 6.9076 -0.3014 -1.6779 22 9 7.0960 -2.3926 -2.5791 23 9 5.0382 -1.5662 -2.0309 24 6 4.2802 0.7092 2.0199 25 8 5.0458 0.1435 3.1027 26 6 4.1057 -0.9278 3.3197 27 1 -0.3633 0.5970 0.8364 28 1 -0.3633 0.4259 -0.9353 29 1 -0.3634 -1.0229 0.0988 30 1 1.8368 -1.7669 1.6353 31 1 1.6888 -0.1659 2.3987 32 1 6.2433 -0.6713 1.1893 33 1 9.0975 -4.1210 -2.2209 34 1 4.8867 1.0414 1.1774 35 1 3.5471 1.4504 2.3383 36 1 3.3194 -0.6865 4.0350 37 1 4.5738 -1.8940 3.5081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646994792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:08 Heat of formation + Delta-G solvation = -234.118258 kcal Electronic energy + Delta-G solvation = -31303.594687 eV Core-core repulsion = 26375.702432 eV Total energy + Delta-G solvation = -4927.892255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.074 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -48.21265 -45.84786 -45.49765 -41.29346 -38.25550 -36.85683 -35.85573 -34.76306 -32.60405 -32.53025 -29.83343 -28.58434 -26.83698 -26.24957 -24.51471 -23.04349 -20.90528 -19.35869 -18.84816 -17.63086 -17.01928 -16.94793 -16.70768 -16.49072 -16.48403 -15.92230 -15.65040 -15.61224 -15.39781 -14.83386 -14.68306 -14.14415 -13.84912 -13.50166 -13.44753 -13.30502 -12.82154 -12.74402 -12.59489 -12.33146 -12.23410 -12.16848 -11.97821 -11.88567 -11.85631 -11.74919 -11.71044 -11.14566 -11.03544 -10.97094 -10.83011 -10.72212 -10.40852 -10.26583 -10.14465 -9.60517 -9.21108 -8.69522 -8.25936 -6.19692 -4.43416 -0.07583 2.68699 2.80800 3.20989 3.28119 3.31572 3.36388 3.49343 3.59877 3.97119 4.14863 4.22880 4.27524 4.56693 4.61768 4.68434 4.88946 4.96217 4.98390 5.08441 5.11244 5.32438 5.42293 5.48466 5.62003 5.77742 5.90884 5.91966 5.96912 6.30212 6.94023 7.14199 7.49519 7.66631 8.25384 8.52328 8.77480 9.23859 10.71883 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.004787 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.184283 B = 5847.600022 C = 6725.184392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 2.405 3.595 3 O -0.939 6.939 4 O -0.887 6.887 5 C -0.596 4.596 6 C -0.147 4.147 7 C 0.508 3.492 8 O -0.499 6.499 9 N -0.699 5.699 10 C 0.244 3.756 11 H 0.086 0.914 12 C -0.551 4.551 13 H 0.079 0.921 14 C 0.065 3.935 15 N -0.839 5.839 16 Si 0.915 3.085 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.413 3.587 21 F -0.210 7.210 22 F -0.138 7.138 23 F -0.204 7.204 24 C 0.040 3.960 25 O -0.366 6.366 26 C 0.070 3.930 27 H 0.123 0.877 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.149 0.851 31 H 0.136 0.864 32 H 0.405 0.595 33 H 0.267 0.733 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.286 6.604 8.996 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.584 3.416 3 O -0.936 6.936 4 O -0.884 6.884 5 C -0.724 4.724 6 C -0.152 4.152 7 C 0.289 3.711 8 O -0.373 6.373 9 N -0.349 5.349 10 C 0.139 3.861 11 H 0.104 0.896 12 C -0.588 4.588 13 H 0.097 0.903 14 C -0.144 4.144 15 N -0.472 5.472 16 Si 0.742 3.258 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.206 1.206 20 C 0.356 3.644 21 F -0.192 7.192 22 F -0.119 7.119 23 F -0.186 7.186 24 C -0.037 4.037 25 O -0.285 6.285 26 C -0.008 4.008 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.167 0.833 31 H 0.154 0.846 32 H 0.240 0.760 33 H 0.078 0.922 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.821 6.201 7.789 17.034 hybrid contribution 0.179 0.063 0.669 0.695 sum -13.642 6.264 8.457 17.230 Atomic orbital electron populations 1.30364 1.27965 1.11356 1.11360 1.08507 0.78405 0.76367 0.78310 1.93591 1.78926 1.34593 1.86468 1.93790 1.77175 1.65644 1.51833 1.30193 1.02115 1.15609 1.24437 1.23758 0.92673 0.98940 0.99801 1.19547 0.83461 0.85132 0.82915 1.90806 1.67982 1.32409 1.46095 1.46045 1.07631 1.38319 1.42936 1.19797 0.94167 0.91745 0.80378 0.89605 1.20923 0.89627 1.34030 1.14266 0.90297 1.25083 1.00324 0.94841 0.94144 1.70428 1.35139 1.27656 1.14008 0.86155 0.82916 0.78001 0.78742 1.19343 1.20619 1.20567 1.23043 0.72436 0.75845 0.93031 1.92986 1.87391 1.41496 1.97360 1.93396 1.76899 1.71984 1.69616 1.93167 1.35386 1.96404 1.93667 1.24359 0.95104 0.92858 0.91344 1.89767 1.41288 1.43655 1.53776 1.23934 0.92048 0.93363 0.91503 0.85823 0.85371 0.85347 0.83317 0.84617 0.75955 0.92204 0.87337 0.87961 0.88806 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.63 10.62 101.05 1.07 -3.56 16 2 S 2.40 29.53 5.13 -107.50 -0.55 28.98 16 3 O -0.94 -13.51 16.77 -57.83 -0.97 -14.48 16 4 O -0.89 -16.26 15.76 -66.01 -1.04 -17.30 16 5 C -0.60 -5.83 4.85 37.16 0.18 -5.65 16 6 C -0.15 -2.01 0.96 -154.58 -0.15 -2.16 16 7 C 0.51 9.89 5.93 -10.99 -0.07 9.82 16 8 O -0.50 -11.20 12.93 -15.07 -0.19 -11.40 16 9 N -0.70 -14.86 4.75 -54.93 -0.26 -15.12 16 10 C 0.24 6.24 2.21 -69.08 -0.15 6.09 16 11 H 0.09 2.40 7.58 -51.93 -0.39 2.01 16 12 C -0.55 -14.39 8.46 -34.44 -0.29 -14.68 16 13 H 0.08 1.97 7.74 -52.48 -0.41 1.56 16 14 C 0.06 1.72 5.20 -17.82 -0.09 1.62 16 15 N -0.84 -23.39 9.50 55.43 0.53 -22.86 16 16 Si 0.92 20.46 29.54 -169.99 -5.02 15.44 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.41 11.08 2.81 37.16 0.10 11.18 16 21 F -0.21 -5.46 16.94 2.25 0.04 -5.42 16 22 F -0.14 -3.95 12.91 2.25 0.03 -3.92 16 23 F -0.20 -5.54 15.68 2.25 0.04 -5.50 16 24 C 0.04 0.53 6.45 37.61 0.24 0.77 16 25 O -0.37 -5.02 11.50 -35.23 -0.41 -5.42 16 26 C 0.07 0.78 8.35 37.61 0.31 1.10 16 27 H 0.12 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.13 0.86 8.14 -51.92 -0.42 0.43 16 29 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.15 1.30 7.94 -51.93 -0.41 0.88 16 31 H 0.14 0.65 8.09 -51.92 -0.42 0.23 16 32 H 0.40 7.88 6.61 -40.82 -0.27 7.61 16 33 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.11 1.57 7.60 -51.93 -0.39 1.17 16 35 H 0.10 1.02 8.03 -51.93 -0.42 0.60 16 36 H 0.09 0.70 8.06 -51.93 -0.42 0.28 16 37 H 0.10 1.18 8.09 -51.93 -0.42 0.76 16 LS Contribution 331.06 15.07 4.99 4.99 Total: -1.00 -36.41 331.06 -5.62 -42.03 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -3.96 Total: 5.46 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 1.16 Total: 4.54 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.27 Total: -37.99 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -2.61 Total: -48.60 kcal Atomic # 9 Polarization: -14.95 SS G_CDS: 0.10 Total: -14.85 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 29.53 SS G_CDS: -0.55 Total: 28.98 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.41 -5.62 -42.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646994792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.090 kcal (2) G-P(sol) polarization free energy of solvation -36.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds