Wall clock time and date at job start Wed Apr 1 2020 03:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42101 * 108.57659 * 2 1 4 4 O 1.42098 * 108.58037 * 228.97311 * 2 1 3 5 5 C 1.81401 * 101.91981 * 114.48304 * 2 1 3 6 6 C 1.52996 * 109.47132 * 184.87588 * 5 2 1 7 7 C 1.50698 * 112.99855 * 295.39430 * 6 5 2 8 8 O 1.21274 * 119.99962 * 341.36314 * 7 6 5 9 9 N 1.34778 * 119.99939 * 161.09062 * 7 6 5 10 10 C 1.46503 * 120.00193 * 180.27476 * 9 7 6 11 11 H 1.09000 * 109.47103 * 325.00124 * 10 9 7 12 12 C 1.50695 * 109.47362 * 204.99947 * 10 9 7 13 13 H 1.08008 * 119.99771 * 359.97438 * 12 10 9 14 14 C 1.37875 * 120.00139 * 179.97438 * 12 10 9 15 15 N 1.31515 * 120.00081 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 120.00124 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46869 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46707 * 119.99872 * 16 14 12 19 19 H 1.48492 * 109.47095 * 240.00023 * 16 14 12 20 20 C 1.53005 * 109.47140 * 84.99796 * 10 9 7 21 21 F 1.39899 * 109.46800 * 59.99969 * 20 10 9 22 22 F 1.39898 * 109.46946 * 180.02562 * 20 10 9 23 23 F 1.39896 * 109.46845 * 300.00292 * 20 10 9 24 24 C 1.54041 * 113.92873 * 67.32398 * 6 5 2 25 25 O 1.44173 * 85.51789 * 136.81863 * 24 6 5 26 26 C 1.44176 * 93.34212 * 335.80978 * 25 24 6 27 27 H 1.08999 * 109.47233 * 305.51760 * 1 2 3 28 28 H 1.09000 * 109.46978 * 65.51568 * 1 2 3 29 29 H 1.08998 * 109.47296 * 185.51884 * 1 2 3 30 30 H 1.08990 * 109.47172 * 64.87657 * 5 2 1 31 31 H 1.09000 * 109.47151 * 304.87316 * 5 2 1 32 32 H 0.97008 * 120.00059 * 0.27011 * 9 7 6 33 33 H 0.96999 * 119.99967 * 180.02562 * 15 14 12 34 34 H 1.08999 * 113.86719 * 250.96778 * 24 6 5 35 35 H 1.09002 * 113.86124 * 22.67333 * 24 6 5 36 36 H 1.09001 * 113.86744 * 270.04478 * 26 25 24 37 37 H 1.09002 * 113.87138 * 138.34145 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7003 -0.7078 1.8501 7 6 4.4637 -1.5646 0.8734 8 8 3.8892 -2.4310 0.2489 9 7 5.7838 -1.3644 0.6898 10 6 6.5248 -2.1934 -0.2641 11 1 6.1206 -3.2056 -0.2565 12 6 7.9797 -2.2305 0.1267 13 1 8.3186 -1.6902 0.9984 14 6 8.8781 -2.9542 -0.6283 15 7 8.4655 -3.6116 -1.6900 16 14 10.6818 -2.9996 -0.1442 17 1 10.8866 -2.1833 1.0793 18 1 11.0870 -4.4029 0.1240 19 1 11.5053 -2.4494 -1.2506 20 6 6.3888 -1.6006 -1.6681 21 9 6.9076 -0.3014 -1.6779 22 9 7.0960 -2.3926 -2.5791 23 9 5.0382 -1.5662 -2.0309 24 6 4.2802 0.7092 2.0199 25 8 5.0458 0.1435 3.1027 26 6 4.1057 -0.9278 3.3197 27 1 -0.3633 0.5970 0.8364 28 1 -0.3633 0.4259 -0.9353 29 1 -0.3634 -1.0229 0.0988 30 1 1.8368 -1.7669 1.6353 31 1 1.6888 -0.1659 2.3987 32 1 6.2433 -0.6713 1.1893 33 1 9.0975 -4.1210 -2.2209 34 1 4.8867 1.0414 1.1774 35 1 3.5471 1.4504 2.3383 36 1 3.3194 -0.6865 4.0350 37 1 4.5738 -1.8940 3.5081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646994792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:07 Heat of formation + Delta-G solvation = -264.595781 kcal Electronic energy + Delta-G solvation = -31304.916292 eV Core-core repulsion = 26375.702432 eV Total energy + Delta-G solvation = -4929.213859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.074 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.40936 -48.03359 -47.73296 -42.40276 -39.72500 -37.85957 -36.88700 -36.58803 -34.47192 -33.60008 -30.64017 -30.25753 -27.73232 -27.25458 -26.59179 -24.57850 -22.72085 -20.91393 -19.81380 -19.10402 -18.91248 -18.64581 -18.50900 -17.85222 -17.79131 -17.43862 -16.86978 -16.75929 -16.59236 -16.43345 -15.86824 -15.62545 -15.29261 -14.94217 -14.90014 -14.57105 -14.43539 -14.28681 -14.05186 -14.01823 -13.91887 -13.87752 -13.68716 -13.53627 -13.09687 -12.95917 -12.86996 -12.79189 -12.71665 -12.65033 -12.23265 -11.97457 -11.84651 -11.57063 -11.36531 -11.11466 -10.72055 -10.53418 -10.09337 -8.23489 -6.54884 -0.90510 1.37984 1.43865 1.46166 1.58696 1.88550 2.04055 2.35924 2.41884 2.53390 2.71414 2.91234 3.09787 3.19045 3.32501 3.57585 3.78911 3.85648 3.96261 4.10352 4.15810 4.20587 4.29985 4.36492 4.48354 4.62664 4.72528 4.85319 4.88550 4.95373 5.01894 5.35199 5.49928 5.61953 6.49729 6.59403 7.11982 7.24006 8.69680 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.004787 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.184283 B = 5847.600022 C = 6725.184392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.630 4.630 2 S 2.374 3.626 3 O -0.976 6.976 4 O -0.971 6.971 5 C -0.581 4.581 6 C -0.155 4.155 7 C 0.497 3.503 8 O -0.534 6.534 9 N -0.703 5.703 10 C 0.253 3.747 11 H 0.051 0.949 12 C -0.562 4.562 13 H 0.089 0.911 14 C 0.015 3.985 15 N -0.874 5.874 16 Si 0.985 3.015 17 H -0.257 1.257 18 H -0.274 1.274 19 H -0.281 1.281 20 C 0.407 3.593 21 F -0.207 7.207 22 F -0.151 7.151 23 F -0.209 7.209 24 C 0.042 3.958 25 O -0.388 6.388 26 C 0.080 3.920 27 H 0.166 0.834 28 H 0.132 0.868 29 H 0.150 0.850 30 H 0.162 0.838 31 H 0.202 0.798 32 H 0.412 0.588 33 H 0.269 0.731 34 H 0.081 0.919 35 H 0.143 0.857 36 H 0.150 0.850 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.006 7.756 12.239 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.783 4.783 2 S 2.562 3.438 3 O -0.973 6.973 4 O -0.968 6.968 5 C -0.711 4.711 6 C -0.160 4.160 7 C 0.282 3.718 8 O -0.411 6.411 9 N -0.354 5.354 10 C 0.146 3.854 11 H 0.069 0.931 12 C -0.599 4.599 13 H 0.107 0.893 14 C -0.191 4.191 15 N -0.508 5.508 16 Si 0.809 3.191 17 H -0.180 1.180 18 H -0.199 1.199 19 H -0.206 1.206 20 C 0.350 3.650 21 F -0.189 7.189 22 F -0.132 7.132 23 F -0.191 7.191 24 C -0.035 4.035 25 O -0.307 6.307 26 C 0.003 3.997 27 H 0.185 0.815 28 H 0.151 0.849 29 H 0.168 0.832 30 H 0.180 0.820 31 H 0.219 0.781 32 H 0.249 0.751 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.160 0.840 36 H 0.168 0.832 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.518 7.385 11.033 20.422 hybrid contribution 0.566 -0.294 -0.327 0.717 sum -14.952 7.091 10.706 19.710 Atomic orbital electron populations 1.30061 1.20761 1.13876 1.13622 1.08740 0.81247 0.75081 0.78750 1.93540 1.81124 1.35473 1.87130 1.93714 1.80420 1.67004 1.55649 1.30155 0.99612 1.17317 1.24016 1.23746 0.94308 0.98179 0.99745 1.20638 0.82716 0.85211 0.83224 1.90777 1.68412 1.34255 1.47615 1.45971 1.08708 1.38231 1.42514 1.19359 0.94661 0.90746 0.80666 0.93130 1.21225 0.89929 1.34125 1.14575 0.89338 1.26029 1.04923 0.94193 0.93916 1.70551 1.36688 1.28419 1.15147 0.85084 0.77080 0.78351 0.78634 1.18012 1.19882 1.20635 1.23379 0.72073 0.75898 0.93619 1.92973 1.87331 1.41227 1.97373 1.93364 1.77200 1.72394 1.70254 1.93160 1.35710 1.96431 1.93778 1.24488 0.95302 0.93078 0.90647 1.89751 1.42688 1.44453 1.53800 1.24274 0.92591 0.92651 0.90227 0.81541 0.84937 0.83165 0.82009 0.78088 0.75105 0.92102 0.90079 0.83990 0.83237 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -6.17 10.62 113.37 1.20 -4.97 16 2 S 2.37 55.51 5.13 -56.49 -0.29 55.22 16 3 O -0.98 -27.47 16.77 -127.37 -2.14 -29.61 16 4 O -0.97 -37.35 15.76 -119.55 -1.88 -39.23 16 5 C -0.58 -9.20 4.85 71.98 0.35 -8.85 16 6 C -0.16 -3.95 0.96 -52.23 -0.05 -4.00 16 7 C 0.50 19.82 5.93 87.66 0.52 20.34 16 8 O -0.53 -25.10 12.93 16.72 0.22 -24.88 16 9 N -0.70 -31.04 4.75 -446.10 -2.12 -33.16 16 10 C 0.25 13.54 2.21 44.24 0.10 13.64 16 11 H 0.05 3.05 7.58 -2.39 -0.02 3.03 16 12 C -0.56 -30.02 8.46 25.60 0.22 -29.80 16 13 H 0.09 4.44 7.74 -2.91 -0.02 4.42 16 14 C 0.01 0.79 5.20 84.65 0.44 1.23 16 15 N -0.87 -50.30 9.50 21.45 0.20 -50.10 16 16 Si 0.99 42.14 29.54 68.60 2.03 44.16 16 17 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 19 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 20 C 0.41 22.96 2.81 71.98 0.20 23.16 16 21 F -0.21 -11.20 16.94 44.97 0.76 -10.44 16 22 F -0.15 -9.08 12.91 44.97 0.58 -8.50 16 23 F -0.21 -12.04 15.68 44.97 0.70 -11.33 16 24 C 0.04 1.00 6.45 72.28 0.47 1.47 16 25 O -0.39 -9.73 11.50 -148.98 -1.71 -11.45 16 26 C 0.08 1.51 8.35 72.27 0.60 2.11 16 27 H 0.17 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.16 2.24 7.94 -2.40 -0.02 2.22 16 31 H 0.20 0.46 8.09 -2.39 -0.02 0.44 16 32 H 0.41 16.55 6.61 -92.70 -0.61 15.94 16 33 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.08 2.38 7.60 -2.39 -0.02 2.37 16 35 H 0.14 2.26 8.03 -2.39 -0.02 2.24 16 36 H 0.15 1.21 8.06 -2.39 -0.02 1.19 16 37 H 0.09 1.94 8.09 -2.39 -0.02 1.92 16 Total: -1.00 -87.38 331.06 0.93 -86.45 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.52 Total: 18.53 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 4.05 Total: 14.33 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -1.91 Total: -83.25 kcal Atomic # 8 Polarization: -99.65 SS G_CDS: -5.52 Total: -105.17 kcal Atomic # 9 Polarization: -32.32 SS G_CDS: 2.05 Total: -30.28 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 55.51 SS G_CDS: -0.29 Total: 55.22 kcal Total: -87.38 0.93 -86.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646994792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.142 kcal (2) G-P(sol) polarization free energy of solvation -87.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -264.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds