Wall clock time and date at job start Wed Apr 1 2020 03:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42098 * 108.57836 * 2 1 4 4 O 1.42093 * 108.58072 * 228.97374 * 2 1 3 5 5 C 1.81408 * 101.91993 * 114.48609 * 2 1 3 6 6 C 1.53003 * 109.46777 * 186.49512 * 5 2 1 7 7 C 1.50703 * 112.99906 * 297.10824 * 6 5 2 8 8 O 1.21280 * 120.00212 * 341.44923 * 7 6 5 9 9 N 1.34777 * 119.99836 * 161.45190 * 7 6 5 10 10 C 1.46496 * 120.00123 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.47121 * 34.99846 * 10 9 7 12 12 C 1.50700 * 109.47282 * 154.99700 * 10 9 7 13 13 H 1.08006 * 119.99831 * 5.58983 * 12 10 9 14 14 C 1.37878 * 120.00032 * 185.59471 * 12 10 9 15 15 N 1.31513 * 120.00309 * 24.22541 * 14 12 10 16 16 Si 1.86805 * 119.99538 * 204.23392 * 14 12 10 17 17 H 1.48502 * 109.46835 * 179.97438 * 16 14 12 18 18 H 1.48505 * 109.47036 * 299.99259 * 16 14 12 19 19 H 1.48493 * 109.47434 * 59.99484 * 16 14 12 20 20 C 1.52998 * 109.47298 * 274.99911 * 10 9 7 21 21 F 1.39905 * 109.46873 * 294.72760 * 20 10 9 22 22 F 1.39894 * 109.47113 * 54.72428 * 20 10 9 23 23 F 1.39892 * 109.47243 * 174.72865 * 20 10 9 24 24 C 1.54032 * 113.92486 * 69.04300 * 6 5 2 25 25 O 1.44184 * 85.51807 * 136.81455 * 24 6 5 26 26 C 1.44176 * 93.33725 * 335.80504 * 25 24 6 27 27 H 1.09001 * 109.46671 * 305.51398 * 1 2 3 28 28 H 1.09002 * 109.46552 * 65.50993 * 1 2 3 29 29 H 1.09000 * 109.46995 * 185.51182 * 1 2 3 30 30 H 1.08999 * 109.47059 * 66.49917 * 5 2 1 31 31 H 1.08998 * 109.47359 * 306.49650 * 5 2 1 32 32 H 0.97004 * 119.99743 * 359.97438 * 9 7 6 33 33 H 0.96994 * 119.99574 * 355.40563 * 15 14 12 34 34 H 1.09004 * 113.86251 * 250.95508 * 24 6 5 35 35 H 1.08996 * 113.86794 * 22.67018 * 24 6 5 36 36 H 1.09003 * 113.86808 * 270.04479 * 26 25 24 37 37 H 1.09001 * 113.86516 * 138.33552 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7357 1.6153 6 6 3.6964 -0.6713 1.8676 7 6 4.4951 -1.4698 0.8697 8 8 3.9529 -2.3292 0.2076 9 7 5.8118 -1.2289 0.7132 10 6 6.5883 -2.0055 -0.2564 11 1 5.9664 -2.2313 -1.1226 12 6 7.7885 -1.2063 -0.6944 13 1 8.0062 -0.2580 -0.2255 14 6 8.6087 -1.6856 -1.6937 15 7 8.1395 -2.5406 -2.5760 16 14 10.3865 -1.1208 -1.7941 17 1 11.0501 -1.7780 -2.9486 18 1 10.4283 0.3530 -1.9718 19 1 11.0943 -1.4887 -0.5417 20 6 7.0538 -3.3111 0.3914 21 9 7.9477 -3.0242 1.4287 22 9 5.9480 -3.9968 0.9052 23 9 7.6913 -4.1059 -0.5671 24 6 4.2316 0.7553 2.0938 25 8 5.0031 0.1745 3.1644 26 6 4.0935 -0.9313 3.3330 27 1 -0.3633 0.5970 0.8365 28 1 -0.3632 0.4260 -0.9353 29 1 -0.3633 -1.0229 0.0987 30 1 1.8628 -1.7757 1.6253 31 1 1.6658 -0.1836 2.3962 32 1 6.2454 -0.5413 1.2425 33 1 7.2373 -2.8851 -2.4853 34 1 4.8363 1.1351 1.2703 35 1 3.4734 1.4626 2.4299 36 1 3.2931 -0.7391 4.0476 37 1 4.5886 -1.8893 3.4923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646994801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:11 Heat of formation + Delta-G solvation = -287.485338 kcal Electronic energy + Delta-G solvation = -31040.125806 eV Core-core repulsion = 26109.919381 eV Total energy + Delta-G solvation = -4930.206425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.074 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.86830 -48.40223 -48.33593 -42.48799 -39.85788 -37.93208 -36.99240 -36.85265 -34.61251 -33.66821 -30.60710 -30.21156 -27.79415 -27.27167 -26.56291 -24.71568 -23.04059 -21.01015 -19.93477 -19.59348 -19.28823 -19.07111 -18.68274 -18.23296 -17.93648 -17.50052 -16.90108 -16.81040 -16.56336 -16.11053 -15.84009 -15.65795 -15.45997 -15.28480 -15.21296 -14.84755 -14.71923 -14.67240 -14.55262 -14.44928 -14.04431 -13.91185 -13.80328 -13.59115 -13.36897 -13.07321 -12.98460 -12.93735 -12.84716 -12.57043 -12.03804 -11.93539 -11.91438 -11.54169 -11.43205 -11.18430 -10.64203 -10.48020 -10.26122 -8.92239 -6.65665 -0.96100 1.24608 1.52622 1.61378 1.79292 1.82588 1.90241 2.12789 2.35796 2.46000 2.65083 2.83958 3.01131 3.13387 3.20363 3.36160 3.45386 3.52060 3.76354 3.90697 4.07691 4.13757 4.25211 4.32038 4.43578 4.51652 4.59305 4.67984 4.81579 4.93093 4.95892 5.18745 5.29613 5.96244 6.23040 6.46118 7.01310 7.15733 8.43239 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.015059 B = 0.004534 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.932782 B = 6173.735695 C = 6456.940920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.628 4.628 2 S 2.378 3.622 3 O -0.974 6.974 4 O -0.982 6.982 5 C -0.582 4.582 6 C -0.156 4.156 7 C 0.494 3.506 8 O -0.534 6.534 9 N -0.697 5.697 10 C 0.236 3.764 11 H 0.044 0.956 12 C -0.649 4.649 13 H 0.082 0.918 14 C -0.003 4.003 15 N -0.877 5.877 16 Si 1.115 2.885 17 H -0.281 1.281 18 H -0.260 1.260 19 H -0.267 1.267 20 C 0.419 3.581 21 F -0.186 7.186 22 F -0.202 7.202 23 F -0.189 7.189 24 C 0.045 3.955 25 O -0.389 6.389 26 C 0.079 3.921 27 H 0.169 0.831 28 H 0.134 0.866 29 H 0.150 0.850 30 H 0.160 0.840 31 H 0.205 0.795 32 H 0.414 0.586 33 H 0.261 0.739 34 H 0.085 0.915 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.245 7.100 13.988 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.781 4.781 2 S 2.567 3.433 3 O -0.971 6.971 4 O -0.979 6.979 5 C -0.712 4.712 6 C -0.160 4.160 7 C 0.279 3.721 8 O -0.411 6.411 9 N -0.348 5.348 10 C 0.128 3.872 11 H 0.061 0.939 12 C -0.684 4.684 13 H 0.100 0.900 14 C -0.209 4.209 15 N -0.507 5.507 16 Si 0.934 3.066 17 H -0.207 1.207 18 H -0.184 1.184 19 H -0.192 1.192 20 C 0.363 3.637 21 F -0.167 7.167 22 F -0.184 7.184 23 F -0.171 7.171 24 C -0.032 4.032 25 O -0.308 6.308 26 C 0.001 3.999 27 H 0.187 0.813 28 H 0.152 0.848 29 H 0.169 0.831 30 H 0.178 0.822 31 H 0.222 0.778 32 H 0.252 0.748 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.163 0.837 36 H 0.171 0.829 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.444 6.697 12.048 19.965 hybrid contribution -1.617 -0.800 1.081 2.103 sum -16.061 5.897 13.129 21.566 Atomic orbital electron populations 1.30050 1.20271 1.13988 1.13832 1.08591 0.81322 0.74913 0.78506 1.93544 1.81191 1.35297 1.87045 1.93671 1.80808 1.67334 1.56089 1.30173 0.99495 1.17305 1.24179 1.23749 0.94218 0.98917 0.99128 1.20782 0.82849 0.84659 0.83800 1.90796 1.70292 1.33647 1.46324 1.45828 1.08580 1.39227 1.41210 1.19385 0.93639 0.86444 0.87703 0.93853 1.21903 1.10592 1.09281 1.26619 0.89956 1.27480 1.08631 0.94790 0.90047 1.70884 1.18962 1.30398 1.30493 0.83000 0.69349 0.77114 0.77165 1.20672 1.18403 1.19227 1.22876 0.74816 0.89223 0.76824 1.93038 1.69749 1.93679 1.60266 1.93075 1.54276 1.82860 1.88190 1.93116 1.82997 1.76730 1.64269 1.24516 0.95724 0.92484 0.90454 1.89756 1.44284 1.41059 1.55709 1.24267 0.93522 0.91744 0.90353 0.81311 0.84784 0.83115 0.82163 0.77766 0.74807 0.92868 0.89638 0.83682 0.82915 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -5.51 10.62 113.37 1.20 -4.31 16 2 S 2.38 53.61 5.11 -56.49 -0.29 53.32 16 3 O -0.97 -26.61 16.84 -127.37 -2.15 -28.75 16 4 O -0.98 -37.22 15.66 -119.32 -1.87 -39.09 16 5 C -0.58 -8.93 4.84 71.98 0.35 -8.58 16 6 C -0.16 -3.93 0.96 -52.23 -0.05 -3.98 16 7 C 0.49 19.74 5.84 87.66 0.51 20.25 16 8 O -0.53 -25.21 12.83 17.39 0.22 -24.98 16 9 N -0.70 -30.75 4.79 -446.10 -2.14 -32.89 16 10 C 0.24 12.54 1.94 44.25 0.09 12.62 16 11 H 0.04 2.66 6.54 -2.39 -0.02 2.64 16 12 C -0.65 -35.35 8.18 25.60 0.21 -35.14 16 13 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 14 C 0.00 -0.15 4.61 84.66 0.39 0.24 16 15 N -0.88 -52.86 12.51 21.45 0.27 -52.59 16 16 Si 1.11 48.52 29.97 68.60 2.06 50.58 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 20 C 0.42 21.80 2.82 71.98 0.20 22.01 16 21 F -0.19 -9.15 16.87 44.97 0.76 -8.39 16 22 F -0.20 -10.09 15.54 44.97 0.70 -9.39 16 23 F -0.19 -10.60 14.44 44.97 0.65 -9.95 16 24 C 0.04 1.04 6.49 72.27 0.47 1.51 16 25 O -0.39 -9.71 11.49 -148.98 -1.71 -11.43 16 26 C 0.08 1.52 8.35 72.27 0.60 2.12 16 27 H 0.17 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.13 1.21 8.14 -2.39 -0.02 1.20 16 29 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.16 2.19 8.00 -2.39 -0.02 2.17 16 31 H 0.21 0.29 8.13 -2.39 -0.02 0.27 16 32 H 0.41 16.62 6.60 -92.71 -0.61 16.01 16 33 H 0.26 16.42 6.34 -92.71 -0.59 15.83 16 34 H 0.09 2.40 7.61 -2.39 -0.02 2.38 16 35 H 0.15 2.09 8.10 -2.39 -0.02 2.08 16 36 H 0.15 1.26 8.09 -2.39 -0.02 1.24 16 37 H 0.09 1.94 8.09 -2.39 -0.02 1.92 16 Total: -1.00 -88.61 331.77 1.19 -87.42 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.71 Total: 19.40 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 3.97 Total: 6.74 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -1.87 Total: -85.48 kcal Atomic # 8 Polarization: -98.75 SS G_CDS: -5.50 Total: -104.25 kcal Atomic # 9 Polarization: -29.83 SS G_CDS: 2.11 Total: -27.72 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.06 Total: 50.58 kcal Atomic # 16 Polarization: 53.61 SS G_CDS: -0.29 Total: 53.32 kcal Total: -88.61 1.19 -87.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646994801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.065 kcal (2) G-P(sol) polarization free energy of solvation -88.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -288.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -287.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds