Wall clock time and date at job start Wed Apr 1 2020 02:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40212 * 126.57944 * 2 1 4 4 N 1.28758 * 108.38252 * 180.02562 * 3 2 1 5 5 C 1.34443 * 109.51279 * 0.02562 * 4 3 2 6 6 C 1.47386 * 125.78280 * 179.97438 * 5 4 3 7 7 O 1.21516 * 120.00209 * 180.02562 * 6 5 4 8 8 O 1.34750 * 119.99910 * 0.02686 * 6 5 4 9 9 C 1.45194 * 117.00255 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47073 * 330.00093 * 9 8 6 11 11 C 1.50706 * 109.47297 * 210.00222 * 9 8 6 12 12 H 1.07998 * 119.99629 * 359.97438 * 11 9 8 13 13 C 1.37875 * 119.99955 * 180.02562 * 11 9 8 14 14 N 1.31515 * 119.99932 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99908 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47295 * 59.99168 * 15 13 11 17 17 H 1.48500 * 109.47035 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46845 * 299.99264 * 15 13 11 19 19 C 1.50698 * 109.47449 * 89.99704 * 9 8 6 20 20 C 1.34509 * 125.79256 * 220.00238 * 19 9 8 21 21 C 1.41383 * 106.84119 * 180.02562 * 20 19 9 22 22 C 1.34512 * 106.83982 * 359.97438 * 21 20 19 23 23 O 1.34298 * 108.42289 * 359.74138 * 22 21 20 24 24 C 1.34774 * 126.59220 * 180.34471 * 2 1 3 25 25 C 1.50710 * 126.57799 * 0.02562 * 24 2 1 26 26 F 1.39903 * 109.47065 * 90.17594 * 25 24 2 27 27 F 1.39902 * 109.46707 * 210.17042 * 25 24 2 28 28 F 1.39891 * 109.47151 * 330.17191 * 25 24 2 29 29 H 1.09005 * 109.47063 * 89.97978 * 1 2 3 30 30 H 1.09005 * 109.46507 * 209.97010 * 1 2 3 31 31 H 1.08993 * 109.47624 * 329.97211 * 1 2 3 32 32 H 0.97003 * 119.99476 * 180.02562 * 14 13 11 33 33 H 1.08003 * 126.57919 * 0.03451 * 20 19 9 34 34 H 1.07996 * 126.58150 * 179.97438 * 21 20 19 35 35 H 1.08007 * 125.78852 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3006 1.1259 0.0000 4 7 3.5238 0.7239 -0.0005 5 6 3.5547 -0.6202 -0.0015 6 6 4.7698 -1.4543 -0.0029 7 8 4.6752 -2.6658 -0.0041 8 8 5.9857 -0.8735 -0.0027 9 6 7.1382 -1.7566 -0.0036 10 1 6.8853 -2.6844 0.5097 11 6 8.2855 -1.0860 0.7071 12 1 8.1611 -0.0950 1.1179 13 6 9.4943 -1.7373 0.8319 14 7 9.6460 -2.9439 0.3312 15 14 10.9167 -0.9057 1.7122 16 1 10.5246 -0.6054 3.1126 17 1 12.0954 -1.8091 1.7114 18 1 11.2608 0.3582 1.0126 19 6 7.5366 -2.0613 -1.4246 20 6 7.9435 -3.2566 -1.8885 21 6 8.2139 -3.0907 -3.2663 22 6 7.9555 -1.8042 -3.5620 23 8 7.5399 -1.1870 -2.4441 24 6 2.2685 -1.0821 -0.0065 25 6 1.8321 -2.5246 -0.0157 26 9 1.7014 -2.9638 -1.3376 27 9 2.7884 -3.3052 0.6426 28 9 0.6017 -2.6438 0.6391 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3632 -0.8903 0.5134 31 1 -0.3634 0.8896 0.5142 32 1 10.4964 -3.4022 0.4194 33 1 8.0442 -4.1681 -1.3180 34 1 8.5613 -3.8511 -3.9501 35 1 8.0599 -1.3465 -4.5347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649266748.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:21 Heat of formation + Delta-G solvation = -97.004205 kcal Electronic energy + Delta-G solvation = -31044.930891 eV Core-core repulsion = 26019.833147 eV Total energy + Delta-G solvation = -5025.097743 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.077 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.47050 -48.08680 -47.75351 -42.66044 -41.33832 -39.43771 -35.91455 -35.20501 -33.28057 -32.17060 -31.69832 -29.76652 -28.51222 -26.84020 -26.54354 -24.33238 -22.90951 -22.19461 -20.96910 -20.45523 -19.41101 -18.87141 -18.75695 -18.48934 -17.75601 -16.89366 -16.68821 -16.64013 -15.88359 -15.49834 -15.17067 -14.92803 -14.81852 -14.64380 -14.45524 -14.32815 -14.15058 -13.89589 -13.76887 -13.66023 -13.42149 -13.05426 -12.77381 -12.19130 -12.07284 -11.77891 -11.61886 -11.55527 -11.29905 -11.13508 -10.94378 -10.89765 -10.39066 -10.23449 -10.01129 -9.77998 -9.43326 -8.80808 -8.63230 -7.25661 -6.20716 -4.38251 0.30578 1.27536 1.42338 2.15677 2.80774 3.07416 3.13773 3.16973 3.26931 3.29559 3.34771 3.58223 3.91187 3.95399 3.99489 4.19267 4.22313 4.34532 4.52511 4.70032 4.85996 5.00108 5.09119 5.50710 5.64897 5.84881 6.07563 6.34445 6.59698 6.97602 7.08759 7.23042 7.27552 7.47354 7.68413 7.70032 7.81168 8.23590 8.44588 8.74874 9.28230 10.78299 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.014528 B = 0.003801 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.846467 B = 7365.356349 C = 7857.424930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.328 5.328 3 N -0.030 5.030 4 N -0.169 5.169 5 C 0.001 3.999 6 C 0.533 3.467 7 O -0.486 6.486 8 O -0.321 6.321 9 C 0.299 3.701 10 H 0.084 0.916 11 C -0.531 4.531 12 H 0.080 0.920 13 C 0.071 3.929 14 N -0.868 5.868 15 Si 0.915 3.085 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.023 3.977 20 C -0.175 4.175 21 C -0.218 4.218 22 C -0.086 4.086 23 O -0.176 6.176 24 C 0.002 3.998 25 C 0.547 3.453 26 F -0.158 7.158 27 F -0.120 7.120 28 F -0.174 7.174 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.269 0.731 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.414 1.460 -2.085 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.114 5.114 3 N -0.011 5.011 4 N -0.041 5.041 5 C -0.139 4.139 6 C 0.373 3.627 7 O -0.373 6.373 8 O -0.235 6.235 9 C 0.246 3.754 10 H 0.101 0.899 11 C -0.568 4.568 12 H 0.098 0.902 13 C -0.135 4.135 14 N -0.502 5.502 15 Si 0.742 3.258 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.028 4.028 20 C -0.195 4.195 21 C -0.238 4.238 22 C -0.154 4.154 23 O -0.072 6.072 24 C -0.137 4.137 25 C 0.490 3.510 26 F -0.140 7.140 27 F -0.101 7.101 28 F -0.156 7.156 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.160 0.840 34 H 0.149 0.851 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -18.321 2.726 -2.075 18.638 hybrid contribution 0.800 -1.110 0.073 1.370 sum -17.521 1.616 -2.002 17.709 Atomic orbital electron populations 1.22692 0.71419 1.07359 1.05877 1.50328 1.09487 1.03975 1.47650 1.82155 0.93655 1.05023 1.20237 1.74971 1.11415 1.09000 1.08690 1.20480 0.91343 0.90458 1.11585 1.19346 0.83913 0.85329 0.74116 1.90946 1.87242 1.13557 1.45547 1.86711 1.13500 1.42298 1.81011 1.19349 0.79366 0.91463 0.85221 0.89908 1.20850 0.94861 1.04336 1.36765 0.90226 1.24920 0.98502 0.94993 0.95065 1.70022 1.25902 1.11972 1.42304 0.86268 0.80343 0.79247 0.79991 1.19689 1.20951 1.19794 1.23490 1.03038 0.87223 0.89100 1.21210 1.06350 0.98965 0.92958 1.21683 1.08328 0.96750 0.96996 1.23617 1.08006 0.93312 0.90444 1.84009 1.66797 1.39721 1.16659 1.21550 0.92489 0.90244 1.09413 1.16893 0.75190 0.83651 0.75293 1.93292 1.95540 1.90277 1.34861 1.93493 1.61664 1.74797 1.80162 1.93140 1.44617 1.96292 1.81540 0.88250 0.87117 0.86861 0.92069 0.84005 0.85121 0.79900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 11.24 59.85 0.67 1.03 16 2 N -0.33 -3.76 4.03 -63.57 -0.26 -4.01 16 3 N -0.03 -0.44 13.78 60.35 0.83 0.39 16 4 N -0.17 -3.00 12.39 32.83 0.41 -2.59 16 5 C 0.00 0.02 6.99 -83.57 -0.58 -0.56 16 6 C 0.53 11.45 7.88 34.45 0.27 11.72 16 7 O -0.49 -10.78 12.31 -19.28 -0.24 -11.02 16 8 O -0.32 -7.83 9.85 -42.73 -0.42 -8.25 16 9 C 0.30 7.89 2.42 -29.03 -0.07 7.82 16 10 H 0.08 2.28 7.15 -51.93 -0.37 1.91 16 11 C -0.53 -14.67 8.89 -34.44 -0.31 -14.98 16 12 H 0.08 2.18 7.81 -52.49 -0.41 1.77 16 13 C 0.07 1.91 5.30 -17.82 -0.09 1.82 16 14 N -0.87 -23.74 10.95 55.43 0.61 -23.13 16 15 Si 0.92 20.95 29.54 -169.99 -5.02 15.93 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 C 0.02 0.59 5.53 -35.63 -0.20 0.39 16 20 C -0.18 -4.32 9.17 -39.70 -0.36 -4.69 16 21 C -0.22 -4.65 10.91 -39.70 -0.43 -5.08 16 22 C -0.09 -1.79 12.09 29.42 0.36 -1.44 16 23 O -0.18 -4.37 10.65 4.34 0.05 -4.32 16 24 C 0.00 0.03 6.46 -81.86 -0.53 -0.50 16 25 C 0.55 7.11 3.24 36.01 0.12 7.23 16 26 F -0.16 -2.08 17.30 2.25 0.04 -2.04 16 27 F -0.12 -1.93 13.42 2.25 0.03 -1.90 16 28 F -0.17 -1.71 14.66 2.25 0.03 -1.67 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.11 0.48 5.69 -51.93 -0.30 0.19 16 31 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.14 3.55 7.87 -52.48 -0.41 3.14 16 34 H 0.13 2.35 8.06 -52.49 -0.42 1.93 16 35 H 0.18 2.90 8.06 -52.48 -0.42 2.48 16 LS Contribution 329.57 15.07 4.97 4.97 Total: -1.00 -31.99 329.57 -2.45 -34.44 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -2.32 Total: 0.46 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -1.16 Total: 2.76 kcal Atomic # 7 Polarization: -30.94 SS G_CDS: 1.59 Total: -29.35 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.61 Total: -23.60 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.10 Total: -5.62 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.99 -2.45 -34.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649266748.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.564 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds