Wall clock time and date at job start Wed Apr 1 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40212 * 126.57944 * 2 1 4 4 N 1.28758 * 108.38252 * 180.02562 * 3 2 1 5 5 C 1.34443 * 109.51279 * 0.02562 * 4 3 2 6 6 C 1.47386 * 125.78280 * 179.97438 * 5 4 3 7 7 O 1.21516 * 120.00209 * 180.02562 * 6 5 4 8 8 O 1.34750 * 119.99910 * 0.02686 * 6 5 4 9 9 C 1.45194 * 117.00255 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47073 * 330.00093 * 9 8 6 11 11 C 1.50706 * 109.47297 * 210.00222 * 9 8 6 12 12 H 1.07998 * 119.99629 * 359.97438 * 11 9 8 13 13 C 1.37875 * 119.99955 * 180.02562 * 11 9 8 14 14 N 1.31515 * 119.99932 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99908 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47295 * 59.99168 * 15 13 11 17 17 H 1.48500 * 109.47035 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46845 * 299.99264 * 15 13 11 19 19 C 1.50698 * 109.47449 * 89.99704 * 9 8 6 20 20 C 1.34509 * 125.79256 * 220.00238 * 19 9 8 21 21 C 1.41383 * 106.84119 * 180.02562 * 20 19 9 22 22 C 1.34512 * 106.83982 * 359.97438 * 21 20 19 23 23 O 1.34298 * 108.42289 * 359.74138 * 22 21 20 24 24 C 1.34774 * 126.59220 * 180.34471 * 2 1 3 25 25 C 1.50710 * 126.57799 * 0.02562 * 24 2 1 26 26 F 1.39903 * 109.47065 * 90.17594 * 25 24 2 27 27 F 1.39902 * 109.46707 * 210.17042 * 25 24 2 28 28 F 1.39891 * 109.47151 * 330.17191 * 25 24 2 29 29 H 1.09005 * 109.47063 * 89.97978 * 1 2 3 30 30 H 1.09005 * 109.46507 * 209.97010 * 1 2 3 31 31 H 1.08993 * 109.47624 * 329.97211 * 1 2 3 32 32 H 0.97003 * 119.99476 * 180.02562 * 14 13 11 33 33 H 1.08003 * 126.57919 * 0.03451 * 20 19 9 34 34 H 1.07996 * 126.58150 * 179.97438 * 21 20 19 35 35 H 1.08007 * 125.78852 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3006 1.1259 0.0000 4 7 3.5238 0.7239 -0.0005 5 6 3.5547 -0.6202 -0.0015 6 6 4.7698 -1.4543 -0.0029 7 8 4.6752 -2.6658 -0.0041 8 8 5.9857 -0.8735 -0.0027 9 6 7.1382 -1.7566 -0.0036 10 1 6.8853 -2.6844 0.5097 11 6 8.2855 -1.0860 0.7071 12 1 8.1611 -0.0950 1.1179 13 6 9.4943 -1.7373 0.8319 14 7 9.6460 -2.9439 0.3312 15 14 10.9167 -0.9057 1.7122 16 1 10.5246 -0.6054 3.1126 17 1 12.0954 -1.8091 1.7114 18 1 11.2608 0.3582 1.0126 19 6 7.5366 -2.0613 -1.4246 20 6 7.9435 -3.2566 -1.8885 21 6 8.2139 -3.0907 -3.2663 22 6 7.9555 -1.8042 -3.5620 23 8 7.5399 -1.1870 -2.4441 24 6 2.2685 -1.0821 -0.0065 25 6 1.8321 -2.5246 -0.0157 26 9 1.7014 -2.9638 -1.3376 27 9 2.7884 -3.3052 0.6426 28 9 0.6017 -2.6438 0.6391 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3632 -0.8903 0.5134 31 1 -0.3634 0.8896 0.5142 32 1 10.4964 -3.4022 0.4194 33 1 8.0442 -4.1681 -1.3180 34 1 8.5613 -3.8511 -3.9501 35 1 8.0599 -1.3465 -4.5347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649266748.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:20 Heat of formation + Delta-G solvation = -118.016580 kcal Electronic energy + Delta-G solvation = -31045.842056 eV Core-core repulsion = 26019.833147 eV Total energy + Delta-G solvation = -5026.008908 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.077 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.52093 -49.07722 -48.90310 -43.84374 -43.16565 -41.15986 -37.70716 -36.22756 -35.28011 -33.53388 -33.38377 -31.61117 -29.49888 -28.54420 -27.76208 -25.88840 -24.60377 -23.33277 -22.51194 -22.17582 -21.19400 -19.95752 -19.91157 -19.60552 -19.24334 -18.69514 -18.42705 -17.84156 -17.41570 -16.91689 -16.73662 -16.62547 -16.33053 -15.89495 -15.72792 -15.37468 -15.21977 -15.08338 -15.02876 -14.80410 -14.65507 -14.42421 -14.09354 -13.88025 -13.52811 -13.45761 -13.23949 -13.12102 -13.03363 -12.80019 -12.70729 -12.21265 -12.09792 -11.89122 -11.78643 -11.39112 -10.97006 -10.78211 -10.49607 -9.10993 -8.22942 -6.50919 -0.85435 0.06562 0.25160 1.04078 1.16229 1.40120 1.45324 1.49778 1.58150 1.60720 2.07949 2.09342 2.36455 2.44066 2.47516 2.84817 2.90808 3.01680 3.17468 3.41394 3.89789 4.16870 4.21233 4.34863 4.42264 4.51746 4.55681 4.62164 4.74677 5.15443 5.25600 5.38699 5.45636 5.63455 5.76419 5.93029 6.23410 6.48810 6.51489 6.76993 7.19584 8.74159 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.014528 B = 0.003801 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.846467 B = 7365.356349 C = 7857.424930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.299 5.299 3 N -0.027 5.027 4 N -0.201 5.201 5 C -0.030 4.030 6 C 0.529 3.471 7 O -0.502 6.502 8 O -0.337 6.337 9 C 0.302 3.698 10 H 0.055 0.945 11 C -0.559 4.559 12 H 0.071 0.929 13 C 0.030 3.970 14 N -0.887 5.887 15 Si 0.979 3.021 16 H -0.263 1.263 17 H -0.274 1.274 18 H -0.272 1.272 19 C -0.008 4.008 20 C -0.186 4.186 21 C -0.225 4.225 22 C -0.072 4.072 23 O -0.197 6.197 24 C 0.017 3.983 25 C 0.555 3.445 26 F -0.157 7.157 27 F -0.141 7.141 28 F -0.149 7.149 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.141 0.859 32 H 0.272 0.728 33 H 0.127 0.873 34 H 0.167 0.833 35 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.833 2.165 -3.124 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.085 5.085 3 N -0.008 5.008 4 N -0.072 5.072 5 C -0.170 4.170 6 C 0.371 3.629 7 O -0.389 6.389 8 O -0.252 6.252 9 C 0.249 3.751 10 H 0.072 0.928 11 C -0.596 4.596 12 H 0.089 0.911 13 C -0.174 4.174 14 N -0.522 5.522 15 Si 0.802 3.198 16 H -0.188 1.188 17 H -0.199 1.199 18 H -0.197 1.197 19 C -0.058 4.058 20 C -0.206 4.206 21 C -0.244 4.244 22 C -0.138 4.138 23 O -0.095 6.095 24 C -0.125 4.125 25 C 0.498 3.502 26 F -0.138 7.138 27 F -0.122 7.122 28 F -0.130 7.130 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.159 0.841 32 H 0.081 0.919 33 H 0.145 0.855 34 H 0.185 0.815 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -19.796 3.440 -3.113 20.333 hybrid contribution 0.991 -1.342 0.330 1.701 sum -18.805 2.097 -2.782 19.125 Atomic orbital electron populations 1.23407 0.67450 1.09594 1.08463 1.50776 1.11211 1.02293 1.44220 1.82054 0.93036 1.05659 1.20011 1.74937 1.13145 1.09065 1.10046 1.20065 0.91053 0.90653 1.15211 1.19839 0.84000 0.85780 0.73325 1.90918 1.87421 1.14306 1.46295 1.86677 1.14393 1.42398 1.81759 1.18953 0.79877 0.90383 0.85887 0.92752 1.21081 0.96121 1.04341 1.38052 0.91064 1.25742 1.00602 0.95555 0.95480 1.70138 1.26438 1.12873 1.42709 0.85300 0.77235 0.78229 0.79079 1.18796 1.19889 1.19678 1.23298 1.05142 0.88021 0.89365 1.21301 1.06353 0.98066 0.94868 1.22039 1.08431 0.98129 0.95769 1.24675 1.05024 0.93234 0.90883 1.83980 1.67586 1.40311 1.17595 1.21518 0.91566 0.91320 1.08092 1.16683 0.75574 0.82642 0.75319 1.93296 1.95538 1.90166 1.34825 1.93454 1.62907 1.75268 1.80603 1.93191 1.42708 1.96121 1.81019 0.85307 0.85502 0.84054 0.91889 0.85493 0.81522 0.74640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.33 11.24 127.77 1.44 1.76 16 2 N -0.30 -6.19 4.03 -355.05 -1.43 -7.62 16 3 N -0.03 -0.74 13.78 37.02 0.51 -0.23 16 4 N -0.20 -7.23 12.39 -50.03 -0.62 -7.85 16 5 C -0.03 -1.09 6.99 40.79 0.29 -0.80 16 6 C 0.53 24.03 7.88 70.23 0.55 24.58 16 7 O -0.50 -23.61 12.31 19.78 0.24 -23.37 16 8 O -0.34 -17.54 9.85 -54.61 -0.54 -18.08 16 9 C 0.30 16.96 2.42 29.10 0.07 17.03 16 10 H 0.05 3.26 7.15 -2.39 -0.02 3.25 16 11 C -0.56 -32.35 8.89 25.60 0.23 -32.12 16 12 H 0.07 4.10 7.81 -2.91 -0.02 4.07 16 13 C 0.03 1.65 5.30 84.65 0.45 2.10 16 14 N -0.89 -49.91 10.95 21.45 0.23 -49.67 16 15 Si 0.98 43.47 29.54 68.60 2.03 45.50 16 16 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 19 C -0.01 -0.42 5.53 24.83 0.14 -0.28 16 20 C -0.19 -9.42 9.17 22.19 0.20 -9.22 16 21 C -0.22 -9.29 10.91 22.19 0.24 -9.05 16 22 C -0.07 -2.85 12.09 66.97 0.81 -2.04 16 23 O -0.20 -9.93 10.65 -1.18 -0.01 -9.94 16 24 C 0.02 0.45 6.46 41.74 0.27 0.72 16 25 C 0.56 13.86 3.24 71.24 0.23 14.10 16 26 F -0.16 -3.94 17.30 44.97 0.78 -3.16 16 27 F -0.14 -4.62 13.42 44.97 0.60 -4.01 16 28 F -0.15 -2.54 14.66 44.97 0.66 -1.88 16 29 H 0.13 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.13 0.56 5.69 -2.38 -0.01 0.55 16 31 H 0.14 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.13 6.67 7.87 -2.91 -0.02 6.65 16 34 H 0.17 5.53 8.06 -2.91 -0.02 5.51 16 35 H 0.24 6.48 8.06 -2.91 -0.02 6.45 16 Total: -1.00 -74.09 329.57 8.56 -65.53 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.19 Total: 8.00 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 4.91 Total: 6.79 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -1.31 Total: -65.38 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -0.31 Total: -51.39 kcal Atomic # 9 Polarization: -11.10 SS G_CDS: 2.04 Total: -9.05 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -74.09 8.56 -65.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649266748.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.487 kcal (2) G-P(sol) polarization free energy of solvation -74.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds