Wall clock time and date at job start Wed Apr 1 2020 03:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48506 * 109.46742 * 239.99613 * 3 2 1 5 5 H 1.48505 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47336 * 119.99641 * 3 2 1 7 7 C 1.39950 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00182 * 197.72226 * 7 2 1 9 9 C 1.41399 * 119.99773 * 17.71280 * 7 2 1 10 10 C 1.40715 * 120.24183 * 24.53568 * 9 7 2 11 11 C 1.37620 * 119.74131 * 180.22985 * 10 9 7 12 12 C 1.38639 * 120.24897 * 359.51904 * 11 10 9 13 13 C 1.50706 * 119.74839 * 180.23652 * 12 11 10 14 14 N 1.46500 * 109.47254 * 89.99873 * 13 12 11 15 15 C 1.38520 * 119.99657 * 179.97438 * 14 13 12 16 16 N 1.32923 * 120.75441 * 359.72056 * 15 14 13 17 17 C 1.32139 * 121.15923 * 179.80107 * 16 15 14 18 18 Cl 1.73607 * 118.80085 * 180.25055 * 17 16 15 19 19 N 1.31792 * 122.39569 * 0.47175 * 17 16 15 20 20 C 1.32867 * 120.63422 * 359.77527 * 19 17 16 21 21 N 1.37514 * 134.78611 * 179.97438 * 20 19 17 22 22 H 0.97009 * 126.27716 * 0.02562 * 21 20 19 23 23 C 1.36637 * 107.43685 * 180.02562 * 21 20 19 24 24 O 1.35338 * 125.08646 * 179.97438 * 23 21 20 25 25 N 1.30741 * 109.82711 * 0.02562 * 23 21 20 26 26 C 1.35718 * 109.39181 * 359.97438 * 25 23 21 27 27 C 1.38635 * 120.49790 * 0.25481 * 12 11 10 28 28 C 1.37609 * 120.25139 * 359.97438 * 27 12 11 29 29 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.13277 * 0.02722 * 10 9 7 31 31 H 1.08000 * 119.87472 * 179.79709 * 11 10 9 32 32 H 1.08994 * 109.46571 * 210.00074 * 13 12 11 33 33 H 1.09001 * 109.46517 * 329.99490 * 13 12 11 34 34 H 0.96998 * 119.99566 * 359.97438 * 14 13 12 35 35 H 0.96700 * 113.99902 * 269.99883 * 24 23 21 36 36 H 1.08002 * 119.87213 * 180.02562 * 27 12 11 37 37 H 1.08000 * 120.12882 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0959 1.6964 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0495 -1.2341 0.2852 9 6 1.3512 -2.4077 -0.3715 10 6 0.2200 -2.3644 -1.2074 11 6 -0.4141 -3.5340 -1.5592 12 6 0.0636 -4.7524 -1.1014 13 6 -0.6364 -6.0267 -1.4980 14 7 -0.0512 -6.5394 -2.7393 15 6 -0.5347 -7.7096 -3.3013 16 7 -1.5252 -8.3822 -2.7240 17 6 -1.9952 -9.4971 -3.2552 18 17 -3.2947 -10.3227 -2.4530 19 7 -1.5104 -10.0075 -4.3694 20 6 -0.5160 -9.4057 -5.0132 21 7 0.1939 -9.6683 -6.1612 22 1 0.0661 -10.4249 -6.7548 23 6 1.1123 -8.6679 -6.3125 24 8 2.0010 -8.5749 -7.3290 25 7 1.0048 -7.8147 -5.3278 26 6 0.0148 -8.2153 -4.4904 27 6 1.1800 -4.8072 -0.2813 28 6 1.8271 -3.6500 0.0871 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1511 -1.4168 -1.5687 31 1 -1.2844 -3.5030 -2.1979 32 1 -0.5178 -6.7675 -0.7073 33 1 -1.6967 -5.8260 -1.6518 34 1 0.6748 -6.0594 -3.1676 35 1 2.8447 -9.0144 -7.1552 36 1 1.5437 -5.7619 0.0691 37 1 2.6969 -3.6950 0.7257 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001655609898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:06 Heat of formation + Delta-G solvation = 77.433893 kcal Electronic energy + Delta-G solvation = -25655.006578 eV Core-core repulsion = 21652.331694 eV Total energy + Delta-G solvation = -4002.674884 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.073 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.75352 -39.78444 -38.00413 -37.54789 -36.94493 -36.06215 -34.06620 -33.14978 -32.19636 -30.62449 -29.42005 -28.97257 -26.73983 -24.31307 -24.09034 -22.93171 -21.92081 -21.10690 -20.34045 -19.83511 -18.92697 -17.77421 -17.42414 -17.37346 -16.52087 -16.07953 -15.51106 -15.35034 -15.19154 -14.36999 -14.22508 -13.98284 -13.67825 -13.58991 -12.96390 -12.94832 -12.57681 -12.05971 -11.76189 -11.72345 -11.60814 -11.54081 -11.41017 -11.19035 -11.12898 -10.73265 -10.61045 -10.56294 -10.05534 -9.74168 -9.51188 -9.36524 -9.32161 -9.21420 -7.78473 -7.59522 -7.48886 -6.88960 -4.48941 0.49336 1.13526 1.16201 1.89416 2.24088 2.49205 2.96168 2.98814 3.00989 3.04446 3.30622 3.39085 3.62760 3.83982 4.11460 4.26000 4.36775 4.53177 5.10950 5.27914 5.58119 5.67705 5.84470 5.84918 6.12151 6.21351 6.23478 6.31976 6.57064 6.84731 6.95486 7.02018 7.12758 7.16077 7.24034 7.33221 7.48839 7.52262 7.73678 7.93335 7.98196 8.04392 8.17360 8.51555 8.76396 8.84243 10.04899 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.013905 B = 0.002383 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.209002 B =11746.050179 C =13244.871714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.119 3.881 10 C -0.170 4.170 11 C -0.078 4.078 12 C -0.252 4.252 13 C 0.185 3.815 14 N -0.661 5.661 15 C 0.521 3.479 16 N -0.574 5.574 17 C 0.440 3.560 18 Cl 0.029 6.971 19 N -0.561 5.561 20 C 0.327 3.673 21 N -0.576 5.576 22 H 0.429 0.571 23 C 0.433 3.567 24 O -0.434 6.434 25 N -0.437 5.437 26 C -0.100 4.100 27 C -0.066 4.066 28 C -0.230 4.230 29 H 0.283 0.717 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.422 0.578 35 H 0.410 0.590 36 H 0.088 0.912 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.351 -16.750 -10.078 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.097 0.903 9 C 0.116 3.884 10 C -0.189 4.189 11 C -0.097 4.097 12 C -0.254 4.254 13 C 0.064 3.936 14 N -0.288 5.288 15 C 0.267 3.733 16 N -0.308 5.308 17 C 0.142 3.858 18 Cl 0.056 6.944 19 N -0.292 5.292 20 C 0.086 3.914 21 N -0.204 5.204 22 H 0.270 0.730 23 C 0.127 3.873 24 O -0.234 6.234 25 N -0.167 5.167 26 C -0.229 4.229 27 C -0.085 4.085 28 C -0.250 4.250 29 H 0.094 0.906 30 H 0.136 0.864 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.261 0.739 35 H 0.268 0.732 36 H 0.107 0.893 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.261 -15.875 -9.606 18.598 hybrid contribution 1.005 -0.140 -0.839 1.317 sum -0.256 -16.015 -10.446 19.122 Atomic orbital electron populations 1.69811 1.07662 1.29657 1.33826 1.25965 0.94764 1.01526 0.92093 0.86334 0.80179 0.79977 0.80109 1.18694 1.20223 1.18886 1.19651 0.98180 0.91276 1.39479 0.90251 1.17676 0.90822 0.92049 0.87847 1.21309 0.99436 0.96811 1.01362 1.20562 0.97982 0.92594 0.98522 1.18930 1.02832 0.92427 1.11242 1.20186 0.96387 0.93660 0.83407 1.45760 1.36812 1.20087 1.26115 1.17672 0.85562 0.86037 0.84053 1.67531 1.16539 1.10968 1.35778 1.21970 0.90146 0.87105 0.86539 1.98429 1.43111 1.75922 1.76898 1.66452 1.14963 1.36674 1.11084 1.17826 0.92720 0.92693 0.88159 1.42858 1.31194 1.24875 1.21487 0.73044 1.19967 0.90785 0.86155 0.90359 1.84912 1.27240 1.77261 1.34028 1.70490 1.18396 1.26077 1.01781 1.19435 1.03289 0.99502 1.00639 1.20401 0.94692 0.96521 0.96849 1.20958 1.03902 0.92822 1.07307 0.90556 0.86376 0.89347 0.91516 0.91458 0.73885 0.73219 0.89350 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.54 10.95 55.55 0.61 -18.93 16 2 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 17.95 29.59 -169.99 -5.03 12.92 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.46 -11.62 9.06 -37.74 -0.34 -11.96 16 8 H 0.08 1.93 7.91 -52.49 -0.41 1.52 16 9 C 0.12 3.02 5.57 -106.82 -0.60 2.43 16 10 C -0.17 -4.19 8.70 -38.87 -0.34 -4.53 16 11 C -0.08 -1.70 9.67 -39.66 -0.38 -2.08 16 12 C -0.25 -5.06 5.27 -104.32 -0.55 -5.61 16 13 C 0.18 3.12 5.85 -5.19 -0.03 3.09 16 14 N -0.66 -10.50 5.69 -61.25 -0.35 -10.84 16 15 C 0.52 8.16 7.55 -154.56 -1.17 6.99 16 16 N -0.57 -8.92 9.66 -10.66 -0.10 -9.03 16 17 C 0.44 6.32 8.17 -91.86 -0.75 5.57 16 18 Cl 0.03 0.34 29.25 -51.86 -1.52 -1.18 16 19 N -0.56 -7.82 10.43 -10.91 -0.11 -7.93 16 20 C 0.33 4.35 8.51 -155.56 -1.32 3.03 16 21 N -0.58 -5.50 6.22 -13.39 -0.08 -5.58 16 22 H 0.43 2.57 8.96 -40.82 -0.37 2.21 16 23 C 0.43 4.54 9.41 -88.70 -0.83 3.71 16 24 O -0.43 -3.11 13.63 -17.71 -0.24 -3.36 16 25 N -0.44 -6.08 11.31 -12.04 -0.14 -6.22 16 26 C -0.10 -1.48 7.16 -84.50 -0.60 -2.09 16 27 C -0.07 -1.37 9.67 -39.66 -0.38 -1.76 16 28 C -0.23 -5.36 9.80 -38.88 -0.38 -5.74 16 29 H 0.28 6.42 8.30 -40.82 -0.34 6.09 16 30 H 0.12 3.04 6.16 -52.49 -0.32 2.71 16 31 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.07 1.10 8.08 -51.93 -0.42 0.69 16 33 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 34 H 0.42 6.78 8.49 -40.82 -0.35 6.43 16 35 H 0.41 0.67 9.06 45.56 0.41 1.08 16 36 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -29.13 346.78 -11.79 -40.92 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -2.28 Total: 11.21 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -7.77 Total: -7.22 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.18 Total: -58.53 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: -0.24 Total: -3.36 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -1.52 Total: -1.18 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.13 -11.79 -40.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655609898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.357 kcal (2) G-P(sol) polarization free energy of solvation -29.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds