Wall clock time and date at job start Wed Apr 1 2020 03:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48506 * 109.46742 * 239.99613 * 3 2 1 5 5 H 1.48505 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47336 * 119.99641 * 3 2 1 7 7 C 1.39950 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00182 * 197.72226 * 7 2 1 9 9 C 1.41399 * 119.99773 * 17.71280 * 7 2 1 10 10 C 1.40715 * 120.24183 * 24.53568 * 9 7 2 11 11 C 1.37620 * 119.74131 * 180.22985 * 10 9 7 12 12 C 1.38639 * 120.24897 * 359.51904 * 11 10 9 13 13 C 1.50706 * 119.74839 * 180.23652 * 12 11 10 14 14 N 1.46500 * 109.47254 * 89.99873 * 13 12 11 15 15 C 1.38520 * 119.99657 * 179.97438 * 14 13 12 16 16 N 1.32923 * 120.75441 * 359.72056 * 15 14 13 17 17 C 1.32139 * 121.15923 * 179.80107 * 16 15 14 18 18 Cl 1.73607 * 118.80085 * 180.25055 * 17 16 15 19 19 N 1.31792 * 122.39569 * 0.47175 * 17 16 15 20 20 C 1.32867 * 120.63422 * 359.77527 * 19 17 16 21 21 N 1.37514 * 134.78611 * 179.97438 * 20 19 17 22 22 H 0.97009 * 126.27716 * 0.02562 * 21 20 19 23 23 C 1.36637 * 107.43685 * 180.02562 * 21 20 19 24 24 O 1.35338 * 125.08646 * 179.97438 * 23 21 20 25 25 N 1.30741 * 109.82711 * 0.02562 * 23 21 20 26 26 C 1.35718 * 109.39181 * 359.97438 * 25 23 21 27 27 C 1.38635 * 120.49790 * 0.25481 * 12 11 10 28 28 C 1.37609 * 120.25139 * 359.97438 * 27 12 11 29 29 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.13277 * 0.02722 * 10 9 7 31 31 H 1.08000 * 119.87472 * 179.79709 * 11 10 9 32 32 H 1.08994 * 109.46571 * 210.00074 * 13 12 11 33 33 H 1.09001 * 109.46517 * 329.99490 * 13 12 11 34 34 H 0.96998 * 119.99566 * 359.97438 * 14 13 12 35 35 H 0.96700 * 113.99902 * 269.99883 * 24 23 21 36 36 H 1.08002 * 119.87213 * 180.02562 * 27 12 11 37 37 H 1.08000 * 120.12882 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0959 1.6964 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0495 -1.2341 0.2852 9 6 1.3512 -2.4077 -0.3715 10 6 0.2200 -2.3644 -1.2074 11 6 -0.4141 -3.5340 -1.5592 12 6 0.0636 -4.7524 -1.1014 13 6 -0.6364 -6.0267 -1.4980 14 7 -0.0512 -6.5394 -2.7393 15 6 -0.5347 -7.7096 -3.3013 16 7 -1.5252 -8.3822 -2.7240 17 6 -1.9952 -9.4971 -3.2552 18 17 -3.2947 -10.3227 -2.4530 19 7 -1.5104 -10.0075 -4.3694 20 6 -0.5160 -9.4057 -5.0132 21 7 0.1939 -9.6683 -6.1612 22 1 0.0661 -10.4249 -6.7548 23 6 1.1123 -8.6679 -6.3125 24 8 2.0010 -8.5749 -7.3290 25 7 1.0048 -7.8147 -5.3278 26 6 0.0148 -8.2153 -4.4904 27 6 1.1800 -4.8072 -0.2813 28 6 1.8271 -3.6500 0.0871 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1511 -1.4168 -1.5687 31 1 -1.2844 -3.5030 -2.1979 32 1 -0.5178 -6.7675 -0.7073 33 1 -1.6967 -5.8260 -1.6518 34 1 0.6748 -6.0594 -3.1676 35 1 2.8447 -9.0144 -7.1552 36 1 1.5437 -5.7619 0.0691 37 1 2.6969 -3.6950 0.7257 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001655609898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:05 Heat of formation + Delta-G solvation = 56.760046 kcal Electronic energy + Delta-G solvation = -25655.903063 eV Core-core repulsion = 21652.331694 eV Total energy + Delta-G solvation = -4003.571369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.073 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.72000 -40.79172 -39.64169 -38.31108 -38.03046 -37.25174 -35.68329 -34.33805 -33.27484 -32.13953 -31.18115 -30.23934 -28.26170 -25.74561 -25.12096 -24.19132 -22.89474 -22.84522 -21.86398 -20.91135 -19.85527 -19.23381 -18.67531 -18.46428 -17.55588 -17.28881 -17.03436 -16.48997 -16.16923 -15.84688 -15.68857 -15.47481 -15.14797 -14.64979 -14.33406 -14.24555 -13.82068 -13.71547 -13.37249 -13.04019 -12.86054 -12.70721 -12.63626 -12.50833 -12.37657 -12.36315 -12.15297 -11.70084 -11.47882 -11.29770 -11.06819 -11.00152 -10.44857 -10.38475 -9.39258 -9.28867 -8.89036 -8.66816 -6.36938 -0.51508 0.05901 0.15103 0.82929 1.03647 1.15166 1.33514 1.38494 1.47424 1.51150 2.05317 2.19967 2.45479 2.53913 2.73155 3.11488 3.25413 3.49519 3.74777 4.06332 4.16933 4.34010 4.34414 4.53071 4.68595 4.78650 4.92279 5.05486 5.14737 5.31784 5.36820 5.43996 5.69035 5.72787 5.81212 5.95248 6.09054 6.20563 6.31674 6.36968 6.40145 6.59388 6.68414 6.91148 6.91952 7.01177 8.29530 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.013905 B = 0.002383 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.209002 B =11746.050179 C =13244.871714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.497 4.497 8 H 0.077 0.923 9 C 0.088 3.912 10 C -0.193 4.193 11 C -0.080 4.080 12 C -0.232 4.232 13 C 0.199 3.801 14 N -0.667 5.667 15 C 0.510 3.490 16 N -0.584 5.584 17 C 0.425 3.575 18 Cl 0.046 6.954 19 N -0.556 5.556 20 C 0.318 3.682 21 N -0.556 5.556 22 H 0.447 0.553 23 C 0.463 3.537 24 O -0.429 6.429 25 N -0.477 5.477 26 C -0.110 4.110 27 C -0.065 4.065 28 C -0.245 4.245 29 H 0.289 0.711 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.420 0.580 35 H 0.438 0.562 36 H 0.117 0.883 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 -18.534 -11.490 21.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.526 4.526 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.213 4.213 11 C -0.099 4.099 12 C -0.234 4.234 13 C 0.078 3.922 14 N -0.295 5.295 15 C 0.257 3.743 16 N -0.319 5.319 17 C 0.127 3.873 18 Cl 0.074 6.926 19 N -0.286 5.286 20 C 0.075 3.925 21 N -0.186 5.186 22 H 0.292 0.708 23 C 0.157 3.843 24 O -0.234 6.234 25 N -0.209 5.209 26 C -0.238 4.238 27 C -0.083 4.083 28 C -0.264 4.264 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.259 0.741 35 H 0.301 0.699 36 H 0.135 0.865 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.835 -17.739 -11.055 20.918 hybrid contribution 0.875 0.130 -0.590 1.063 sum 0.039 -17.609 -11.645 21.112 Atomic orbital electron populations 1.69865 1.09017 1.30777 1.34831 1.26773 0.95483 1.04575 0.91160 0.85265 0.78825 0.75640 0.80099 1.18512 1.19219 1.18286 1.19887 0.98429 0.92552 1.41722 0.90471 1.18004 0.91644 0.93120 0.88724 1.21259 1.00348 0.97085 1.02595 1.20770 0.98205 0.92489 0.98451 1.19218 1.01809 0.93193 1.09173 1.19944 0.95918 0.92103 0.84273 1.45348 1.37350 1.20785 1.25998 1.17712 0.86005 0.85946 0.84668 1.67500 1.16670 1.11445 1.36240 1.22227 0.90860 0.87229 0.86981 1.98430 1.42158 1.75423 1.76584 1.66529 1.14827 1.36412 1.10842 1.17985 0.92822 0.92487 0.89177 1.42781 1.30090 1.25159 1.20558 0.70846 1.20044 0.90178 0.84874 0.89246 1.84895 1.28302 1.77699 1.32542 1.70492 1.19320 1.27857 1.03240 1.19495 1.03644 1.00022 1.00603 1.20694 0.94395 0.96947 0.96281 1.21154 1.04485 0.93063 1.07708 0.89998 0.88257 0.87827 0.90707 0.91389 0.74080 0.69880 0.86501 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.25 10.95 21.83 0.24 -42.01 16 2 C 0.04 1.78 5.14 85.26 0.44 2.22 16 3 Si 0.98 37.51 29.59 68.60 2.03 39.55 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 6 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 7 C -0.50 -26.31 9.06 23.46 0.21 -26.10 16 8 H 0.08 3.93 7.91 -2.91 -0.02 3.91 16 9 C 0.09 4.62 5.57 -21.29 -0.12 4.50 16 10 C -0.19 -9.91 8.70 22.73 0.20 -9.71 16 11 C -0.08 -3.55 9.67 22.22 0.21 -3.33 16 12 C -0.23 -9.16 5.27 -19.67 -0.10 -9.26 16 13 C 0.20 6.49 5.85 85.64 0.50 6.99 16 14 N -0.67 -20.55 5.69 -347.68 -1.98 -22.52 16 15 C 0.51 15.44 7.55 133.39 1.01 16.45 16 16 N -0.58 -17.50 9.66 -187.64 -1.81 -19.31 16 17 C 0.42 11.62 8.17 180.78 1.48 13.10 16 18 Cl 0.05 1.03 29.25 -2.72 -0.08 0.95 16 19 N -0.56 -14.52 10.43 -188.43 -1.96 -16.48 16 20 C 0.32 7.81 8.51 133.74 1.14 8.95 16 21 N -0.56 -9.01 6.22 -307.01 -1.91 -10.92 16 22 H 0.45 3.84 8.96 -92.70 -0.83 3.01 16 23 C 0.46 8.40 9.41 179.68 1.69 10.09 16 24 O -0.43 -4.63 13.63 -86.27 -1.18 -5.81 16 25 N -0.48 -12.46 11.31 -305.80 -3.46 -15.92 16 26 C -0.11 -3.10 7.16 39.61 0.28 -2.81 16 27 C -0.06 -2.64 9.67 22.22 0.21 -2.43 16 28 C -0.24 -11.55 9.80 22.73 0.22 -11.33 16 29 H 0.29 13.51 8.30 -92.70 -0.77 12.74 16 30 H 0.10 5.38 6.16 -2.91 -0.02 5.37 16 31 H 0.10 4.18 8.06 -2.91 -0.02 4.16 16 32 H 0.07 2.33 8.08 -2.39 -0.02 2.31 16 33 H 0.07 2.22 8.08 -2.39 -0.02 2.20 16 34 H 0.42 13.25 8.49 -92.71 -0.79 12.46 16 35 H 0.44 -0.34 9.06 -74.06 -0.67 -1.01 16 36 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 37 H 0.10 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -64.67 346.78 -3.82 -68.50 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: -1.09 Total: 26.67 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 7.37 Total: -2.69 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -10.89 Total: -127.17 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -1.18 Total: -5.81 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.55 kcal Atomic # 17 Polarization: 1.03 SS G_CDS: -0.08 Total: 0.95 kcal Total: -64.67 -3.82 -68.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655609898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.257 kcal (2) G-P(sol) polarization free energy of solvation -64.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds