Wall clock time and date at job start Wed Apr 1 2020 02:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99885 * 2 1 4 4 C 1.52992 * 109.47345 * 66.04576 * 3 2 1 5 5 N 1.46506 * 109.47162 * 180.02562 * 4 3 2 6 6 C 1.34773 * 119.99969 * 180.02562 * 5 4 3 7 7 O 1.21713 * 120.00375 * 359.71676 * 6 5 4 8 8 C 1.46446 * 120.00001 * 180.02562 * 6 5 4 9 9 S 1.75824 * 125.45842 * 359.74199 * 8 6 5 10 10 C 1.70608 * 91.58584 * 180.02562 * 9 8 6 11 11 C 1.33775 * 110.99924 * 359.97438 * 10 9 8 12 12 C 1.36789 * 125.46274 * 179.44036 * 8 6 5 13 13 Cl 1.73594 * 123.38036 * 359.97438 * 12 8 6 14 14 C 1.46895 * 110.99780 * 236.04039 * 2 1 3 15 15 C 1.50703 * 109.47737 * 293.95419 * 14 2 1 16 16 O 1.21293 * 119.99628 * 0.02562 * 15 14 2 17 17 N 1.34776 * 120.00260 * 179.97438 * 15 14 2 18 18 C 1.37093 * 119.99741 * 179.97438 * 17 15 14 19 19 H 1.08004 * 120.00273 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99754 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99909 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00045 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47466 * 59.99676 * 22 20 18 24 24 H 1.48499 * 109.47448 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46939 * 300.00051 * 22 20 18 26 26 H 1.09000 * 109.46983 * 60.00007 * 1 2 3 27 27 H 1.09001 * 109.47224 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46952 * 300.00285 * 1 2 3 29 29 H 1.08995 * 109.46908 * 306.03990 * 3 2 1 30 30 H 1.09006 * 109.46700 * 186.04700 * 3 2 1 31 31 H 1.08995 * 109.47596 * 59.99835 * 4 3 2 32 32 H 1.09006 * 109.47322 * 299.99743 * 4 3 2 33 33 H 0.97004 * 120.00008 * 359.97438 * 5 4 3 34 34 H 1.07999 * 124.50295 * 179.97438 * 10 9 8 35 35 H 1.07994 * 122.45421 * 180.02562 * 11 10 9 36 36 H 1.08996 * 109.47437 * 53.96066 * 14 2 1 37 37 H 1.09004 * 109.46747 * 173.95295 * 14 2 1 38 38 H 0.96993 * 119.99728 * 0.02562 * 17 15 14 39 39 H 0.97000 * 120.00004 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 7 2.1560 3.4254 1.3179 6 6 1.9554 4.2242 2.3847 7 8 1.3341 3.8109 3.3462 8 6 2.4792 5.5918 2.3841 9 16 3.3913 6.3341 1.0771 10 6 3.5352 7.7962 1.9445 11 6 2.9300 7.7093 3.1343 12 6 2.3323 6.4983 3.3980 13 17 1.4817 6.1537 4.8715 14 6 1.9954 -0.7661 -1.1375 15 6 1.6369 -2.2205 -0.9727 16 8 1.0046 -2.5832 -0.0033 17 7 2.0180 -3.1181 -1.9031 18 6 1.6923 -4.4413 -1.7529 19 1 1.1300 -4.7644 -0.8892 20 6 2.0856 -5.3668 -2.7118 21 7 2.7702 -4.9738 -3.7624 22 14 1.6412 -7.1696 -2.5075 23 1 0.1640 -7.3126 -2.4556 24 1 2.1739 -7.9441 -3.6571 25 1 2.2330 -7.6855 -1.2469 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.5612 1.9272 -0.8310 30 1 3.0798 1.3443 -0.1083 31 1 2.0657 1.5016 2.1491 32 1 0.5471 2.0845 1.4264 33 1 2.6482 3.7559 0.5502 34 1 4.0470 8.6752 1.5813 35 1 2.9080 8.5311 3.8347 36 1 1.5612 -0.3874 -2.0627 37 1 3.0797 -0.6612 -1.1755 38 1 2.5233 -2.8280 -2.6785 39 1 3.0451 -5.6199 -4.4316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663188543.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:22 Heat of formation + Delta-G solvation = -28.391259 kcal Electronic energy + Delta-G solvation = -24035.853891 eV Core-core repulsion = 20131.741285 eV Total energy + Delta-G solvation = -3904.112606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.070 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.07221 -38.72731 -38.25671 -36.77407 -36.41260 -34.72035 -33.81421 -31.26674 -30.89107 -29.19635 -27.70241 -25.82236 -25.02687 -23.81555 -21.73279 -21.31362 -19.89712 -19.17561 -19.00429 -17.85588 -16.88522 -16.38592 -16.03019 -15.84965 -15.68490 -15.17460 -14.65162 -14.58110 -14.27643 -14.04474 -13.85166 -13.75635 -13.50721 -13.33133 -13.17621 -12.95714 -12.13735 -11.91249 -11.86557 -11.77659 -11.52739 -11.41965 -11.28148 -11.18204 -11.07212 -10.92652 -10.43808 -10.22977 -10.20427 -9.52369 -9.46895 -9.22391 -9.01062 -8.48873 -7.99441 -7.89855 -6.41819 -3.82513 -0.13276 0.66654 1.15036 1.71322 2.06077 2.72454 2.83123 3.20452 3.26136 3.30744 3.89750 4.01437 4.23327 4.32065 4.50100 4.57663 4.80852 4.95415 5.10833 5.11041 5.24322 5.36013 5.36946 5.44080 5.61974 5.67841 5.81006 5.86085 5.91640 5.98959 6.12456 6.26941 6.55342 7.10076 7.20463 7.30716 7.55236 7.86963 8.06061 8.61703 9.18118 9.54059 10.06040 10.75838 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.028618 B = 0.001695 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.166868 B =16515.785304 C =17258.910347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.514 5.514 3 C 0.044 3.956 4 C 0.123 3.877 5 N -0.724 5.724 6 C 0.585 3.415 7 O -0.505 6.505 8 C -0.265 4.265 9 S 0.242 5.758 10 C -0.222 4.222 11 C -0.143 4.143 12 C 0.017 3.983 13 Cl -0.012 7.012 14 C 0.047 3.953 15 C 0.443 3.557 16 O -0.576 6.576 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.273 1.273 26 H 0.016 0.984 27 H 0.098 0.902 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.395 0.605 34 H 0.179 0.821 35 H 0.156 0.844 36 H 0.049 0.951 37 H 0.089 0.911 38 H 0.392 0.608 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.670 29.121 6.181 29.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.085 4.085 4 C 0.000 4.000 5 N -0.376 5.376 6 C 0.370 3.630 7 O -0.381 6.381 8 C -0.387 4.387 9 S 0.508 5.492 10 C -0.360 4.360 11 C -0.174 4.174 12 C -0.025 4.025 13 Cl 0.017 6.983 14 C -0.084 4.084 15 C 0.229 3.771 16 O -0.460 6.460 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 H 0.034 0.966 27 H 0.117 0.883 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.229 0.771 34 H 0.196 0.804 35 H 0.173 0.827 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.225 0.775 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.434 27.675 6.502 28.635 hybrid contribution -0.274 0.542 -0.141 0.624 sum 3.160 28.217 6.361 29.097 Atomic orbital electron populations 1.22638 0.86412 1.04809 0.99153 1.61435 1.08996 1.10285 1.43141 1.22255 1.00844 0.89901 0.95537 1.21399 0.99833 0.79771 0.98970 1.45778 1.58190 1.14766 1.18910 1.16694 0.80178 0.82893 0.83239 1.90923 1.39515 1.74124 1.33537 1.24585 1.13099 1.00130 1.00839 1.83133 1.47393 1.02686 1.15946 1.25222 1.06857 1.04460 0.99454 1.19799 1.01332 0.97695 0.98606 1.20387 0.98295 0.93622 0.90244 1.98420 1.74409 1.94964 1.30496 1.21869 1.00688 0.94245 0.91612 1.19700 0.85568 0.86592 0.85286 1.90496 1.43822 1.80089 1.31593 1.41848 1.49452 1.07353 1.21403 1.19653 1.32999 0.82272 1.07911 0.87935 1.25257 0.96811 1.00579 0.95303 1.69601 1.38022 1.35860 1.10903 0.85915 0.78902 0.81678 0.77710 1.19926 1.21008 1.19880 0.96594 0.88329 0.91798 0.94478 0.90190 0.89792 0.90738 0.77103 0.80386 0.82687 0.93322 0.89297 0.77507 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.96 60.07 0.54 0.82 16 2 N -0.51 -8.27 4.50 -244.38 -1.10 -9.37 16 3 C 0.04 0.51 5.07 -3.83 -0.02 0.49 16 4 C 0.12 1.46 5.60 -4.04 -0.02 1.44 16 5 N -0.72 -7.19 5.55 -61.69 -0.34 -7.53 16 6 C 0.59 7.01 7.78 -12.96 -0.10 6.91 16 7 O -0.51 -7.87 15.09 5.18 0.08 -7.79 16 8 C -0.26 -2.52 6.45 -36.80 -0.24 -2.76 16 9 S 0.24 1.33 22.15 -107.50 -2.38 -1.06 16 10 C -0.22 -1.06 10.92 29.17 0.32 -0.74 16 11 C -0.14 -0.93 10.06 -41.38 -0.42 -1.35 16 12 C 0.02 0.16 6.39 -40.34 -0.26 -0.10 16 13 Cl -0.01 -0.13 27.24 -51.86 -1.41 -1.54 16 14 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 15 C 0.44 10.29 7.47 -10.98 -0.08 10.21 16 16 O -0.58 -15.37 13.91 5.55 0.08 -15.29 16 17 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 18 C -0.30 -8.26 9.68 -14.94 -0.14 -8.41 16 19 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 22 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.10 1.94 5.82 -51.93 -0.30 1.63 16 28 H 0.06 0.92 6.47 -51.93 -0.34 0.59 16 29 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 30 H 0.08 0.82 7.93 -51.93 -0.41 0.41 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 0.95 6.55 -51.93 -0.34 0.61 16 33 H 0.40 2.80 7.58 -40.82 -0.31 2.49 16 34 H 0.18 0.33 8.06 -52.49 -0.42 -0.09 16 35 H 0.16 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 37 H 0.09 1.35 7.93 -51.93 -0.41 0.94 16 38 H 0.39 9.32 7.90 -40.82 -0.32 8.99 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 361.28 15.07 5.44 5.44 Total: -1.00 -33.56 361.28 -9.02 -42.58 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.48 Total: 8.55 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -0.55 Total: 7.78 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.78 Total: -54.65 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.16 Total: -23.08 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.38 Total: -1.06 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.41 Total: -1.54 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.56 -9.02 -42.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663188543.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.191 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds