Wall clock time and date at job start Wed Apr 1 2020 02:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46496 * 120.00001 * 2 1 4 4 C 1.53000 * 109.46886 * 269.99840 * 3 2 1 5 5 N 1.46908 * 109.47097 * 179.97438 * 4 3 2 6 6 C 1.46895 * 110.99910 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.46921 * 180.02562 * 6 5 4 8 8 O 1.21295 * 120.00591 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00150 * 180.02562 * 7 6 5 10 10 C 1.37100 * 120.00423 * 179.97438 * 9 7 6 11 11 H 1.08003 * 119.99579 * 359.97438 * 10 9 7 12 12 C 1.38947 * 120.00168 * 179.97438 * 10 9 7 13 13 N 1.31417 * 120.00159 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99994 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47177 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47079 * 120.00048 * 14 12 10 17 17 H 1.48496 * 109.47530 * 240.00282 * 14 12 10 18 18 C 1.34776 * 119.99992 * 179.97438 * 2 1 3 19 19 O 1.21711 * 119.99944 * 180.11183 * 18 2 1 20 20 C 1.46474 * 119.99874 * 0.11123 * 18 2 1 21 21 C 1.36685 * 125.44693 * 171.38113 * 20 18 2 22 22 C 1.37403 * 113.31699 * 179.97438 * 21 20 18 23 23 C 1.34015 * 115.07282 * 0.02562 * 22 21 20 24 24 Cl 1.73601 * 124.53130 * 180.02562 * 23 22 21 25 25 S 1.70617 * 110.93427 * 359.97438 * 23 22 21 26 26 H 1.09003 * 109.47153 * 263.46072 * 1 2 3 27 27 H 1.08996 * 109.46823 * 23.45773 * 1 2 3 28 28 H 1.08998 * 109.46812 * 143.45547 * 1 2 3 29 29 H 1.09002 * 109.47229 * 29.99490 * 3 2 1 30 30 H 1.09006 * 109.47329 * 149.99629 * 3 2 1 31 31 H 1.09002 * 109.46901 * 299.99851 * 4 3 2 32 32 H 1.09000 * 109.47485 * 60.00177 * 4 3 2 33 33 H 1.00902 * 110.99318 * 56.04312 * 5 4 3 34 34 H 1.08997 * 109.47261 * 299.99981 * 6 5 4 35 35 H 1.09002 * 109.47268 * 59.99864 * 6 5 4 36 36 H 0.97002 * 120.00063 * 0.02562 * 9 7 6 37 37 H 0.96997 * 119.99834 * 179.97438 * 13 12 10 38 38 H 1.08004 * 123.34610 * 0.02562 * 21 20 18 39 39 H 1.07996 * 122.46276 * 179.72531 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1866 2.9829 -1.4426 6 6 3.4503 3.4384 -2.8140 7 6 4.2035 4.7430 -2.7738 8 8 4.4918 5.2443 -1.7076 9 7 4.5559 5.3533 -3.9226 10 6 5.2407 6.5405 -3.8861 11 1 5.4974 6.9868 -2.9367 12 6 5.6044 7.1695 -5.0705 13 7 5.2916 6.6266 -6.2257 14 14 6.5368 8.7873 -5.0207 15 1 6.7647 9.1841 -3.6080 16 1 7.8443 8.6264 -5.7062 17 1 5.7433 9.8374 -5.7084 18 6 2.1390 -1.1672 0.0005 19 8 3.3561 -1.1672 0.0026 20 6 1.4066 -2.4357 -0.0014 21 6 1.9639 -3.6726 -0.1680 22 6 1.0450 -4.6933 -0.1262 23 6 -0.2238 -4.3076 0.0675 24 17 -1.5778 -5.3899 0.1616 25 16 -0.3301 -2.6108 0.2106 26 1 -0.3633 -0.1170 1.0210 27 1 -0.3633 0.9427 -0.4091 28 1 -0.3633 -0.8256 -0.6119 29 1 1.6085 2.0284 0.5138 30 1 3.1500 1.1384 0.5139 31 1 3.0417 0.9506 -1.9563 32 1 1.5002 1.8406 -1.9564 33 1 4.0440 2.9057 -0.9162 34 1 4.0469 2.6908 -3.3368 35 1 2.5050 3.5801 -3.3379 36 1 4.3244 4.9531 -4.7753 37 1 5.5453 7.0659 -7.0525 38 1 3.0217 -3.8320 -0.3168 39 1 1.3240 -5.7297 -0.2458 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664349365.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:54 Heat of formation + Delta-G solvation = -54.729340 kcal Electronic energy + Delta-G solvation = -23936.484429 eV Core-core repulsion = 20031.229718 eV Total energy + Delta-G solvation = -3905.254711 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.17691 -40.15817 -38.95432 -37.70171 -37.34640 -36.33857 -35.74851 -33.28651 -31.87721 -30.12980 -28.28743 -27.60789 -26.20413 -25.18580 -23.49401 -21.87293 -21.07053 -20.34924 -19.92526 -19.26240 -17.93513 -17.65003 -17.30926 -16.99382 -16.72112 -16.56692 -16.37132 -15.84126 -15.38048 -15.06547 -14.95561 -14.69763 -14.49866 -14.40150 -14.24511 -13.87103 -13.82471 -13.56463 -13.39672 -13.31463 -12.96808 -12.79067 -12.54809 -12.41384 -12.40206 -12.11853 -12.10685 -11.54103 -11.51786 -11.26131 -10.40730 -10.07345 -10.02303 -9.75311 -9.51814 -9.43822 -8.47220 -5.96165 -0.76325 -0.01980 0.62655 1.09896 1.15936 1.36951 1.42384 1.56744 1.70391 2.01136 2.03641 2.29678 2.95152 3.19847 3.36175 3.55250 3.96965 4.00135 4.06125 4.09300 4.27128 4.29336 4.43403 4.47823 4.48882 4.57657 4.72593 4.73755 4.76385 4.91298 4.93553 5.11965 5.28316 5.41053 5.82230 6.05212 6.12328 6.28154 6.58936 6.89355 7.11825 7.54864 8.09891 8.70429 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.033284 B = 0.001570 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.044064 B =17825.586198 C =17895.342089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.604 5.604 3 C 0.124 3.876 4 C 0.052 3.948 5 N -0.674 5.674 6 C 0.066 3.934 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.573 5.573 10 C -0.335 4.335 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.995 3.005 15 H -0.273 1.273 16 H -0.272 1.272 17 H -0.270 1.270 18 C 0.582 3.418 19 O -0.569 6.569 20 C -0.291 4.291 21 C -0.050 4.050 22 C -0.142 4.142 23 C -0.202 4.202 24 Cl -0.008 7.008 25 S 0.336 5.664 26 H 0.092 0.908 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.019 0.981 32 H 0.092 0.908 33 H 0.344 0.656 34 H 0.060 0.940 35 H 0.110 0.890 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.156 0.844 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.241 -24.746 10.918 32.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.336 5.336 3 C 0.002 3.998 4 C -0.078 4.078 5 N -0.306 5.306 6 C -0.066 4.066 7 C 0.225 3.775 8 O -0.508 6.508 9 N -0.210 5.210 10 C -0.464 4.464 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.561 5.561 14 Si 0.818 3.182 15 H -0.198 1.198 16 H -0.197 1.197 17 H -0.195 1.195 18 C 0.371 3.629 19 O -0.450 6.450 20 C -0.412 4.412 21 C -0.084 4.084 22 C -0.173 4.173 23 C -0.347 4.347 24 Cl 0.020 6.980 25 S 0.605 5.395 26 H 0.110 0.890 27 H 0.139 0.861 28 H 0.098 0.902 29 H 0.131 0.869 30 H 0.087 0.913 31 H 0.038 0.962 32 H 0.110 0.890 33 H 0.162 0.838 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.173 0.827 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -19.332 -23.096 11.754 32.331 hybrid contribution 2.369 -1.383 -1.196 2.993 sum -16.963 -24.479 10.558 31.598 Atomic orbital electron populations 1.22404 0.77251 1.05227 1.04426 1.47698 1.08334 1.05128 1.72424 1.21374 0.98234 0.83981 0.96258 1.22292 0.99191 0.88622 0.97667 1.60060 1.28258 1.29729 1.12571 1.21527 1.00593 0.93001 0.91528 1.20817 0.84172 0.88616 0.83866 1.90492 1.60632 1.68761 1.30938 1.41934 1.50366 1.21168 1.07530 1.19730 1.33070 0.99378 0.94229 0.90227 1.26062 0.98427 1.02866 0.93955 1.69681 1.47300 1.41222 0.97940 0.84847 0.77895 0.77148 0.78292 1.19758 1.19680 1.19487 1.17312 0.86388 0.83177 0.76055 1.90845 1.14629 1.87393 1.52183 1.24615 0.99445 0.97368 1.19801 1.20718 1.01806 0.89639 0.96226 1.20140 0.90143 1.02436 1.04624 1.26170 0.94263 1.01852 1.12393 1.98391 1.40795 1.62203 1.96581 1.83511 0.99466 0.92077 1.64484 0.89021 0.86053 0.90200 0.86881 0.91315 0.96245 0.88987 0.83808 0.92216 0.87196 0.76963 0.91279 0.82672 0.81770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.43 8.91 127.77 1.14 1.57 16 2 N -0.60 -10.58 2.87 -851.72 -2.45 -13.02 16 3 C 0.12 2.55 5.64 86.38 0.49 3.04 16 4 C 0.05 1.24 6.01 86.30 0.52 1.76 16 5 N -0.67 -21.30 6.13 -517.93 -3.17 -24.48 16 6 C 0.07 2.30 6.17 85.56 0.53 2.82 16 7 C 0.44 21.08 7.82 87.65 0.69 21.77 16 8 O -0.62 -34.77 15.78 -3.08 -0.05 -34.82 16 9 N -0.57 -29.71 5.29 -306.98 -1.62 -31.34 16 10 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 11 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 12 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 13 N -0.92 -49.91 13.05 21.66 0.28 -49.63 16 14 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 16 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 18 C 0.58 13.27 7.63 86.39 0.66 13.93 16 19 O -0.57 -18.00 16.43 -4.38 -0.07 -18.08 16 20 C -0.29 -5.05 6.23 24.05 0.15 -4.90 16 21 C -0.05 -0.82 10.02 21.71 0.22 -0.61 16 22 C -0.14 -1.85 10.08 21.11 0.21 -1.64 16 23 C -0.20 -2.49 6.82 66.86 0.46 -2.03 16 24 Cl -0.01 -0.09 29.27 -2.72 -0.08 -0.17 16 25 S 0.34 3.41 17.89 -56.49 -1.01 2.40 16 26 H 0.09 0.45 7.76 -2.39 -0.02 0.43 16 27 H 0.12 0.61 8.02 -2.39 -0.02 0.59 16 28 H 0.08 0.57 4.62 -20.64 -0.10 0.47 16 29 H 0.11 1.90 8.07 -2.39 -0.02 1.88 16 30 H 0.07 1.72 7.42 -2.38 -0.02 1.71 16 31 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.34 11.83 8.43 -89.69 -0.76 11.07 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 36 H 0.40 19.50 7.90 -92.71 -0.73 18.77 16 37 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 38 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 39 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -74.22 364.45 -0.26 -74.48 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: -0.45 Total: 32.39 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 6.33 Total: 17.08 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -6.96 Total: -118.46 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -0.12 Total: -52.89 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.01 Total: 2.40 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.08 Total: -0.17 kcal Total: -74.22 -0.26 -74.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664349365.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.750 kcal (2) G-P(sol) polarization free energy of solvation -74.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds