Wall clock time and date at job start Wed Apr 1 2020 03:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86794 * 120.00218 * 2 1 4 4 H 1.48498 * 109.47369 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47236 * 299.99985 * 3 2 1 6 6 H 1.48501 * 109.47243 * 59.99970 * 3 2 1 7 7 C 1.39946 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99900 * 191.08110 * 7 2 1 9 9 C 1.41401 * 120.00009 * 11.07474 * 7 2 1 10 10 C 1.40710 * 120.24249 * 208.32256 * 9 7 2 11 11 C 1.37624 * 119.74281 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.25007 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.75030 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.47035 * 90.00735 * 13 12 11 15 15 S 1.65595 * 120.00122 * 164.20473 * 14 13 12 16 16 O 1.42103 * 106.40070 * 309.50816 * 15 14 13 17 17 O 1.42098 * 106.40133 * 176.59330 * 15 14 13 18 18 C 1.76202 * 107.22054 * 63.04826 * 15 14 13 19 19 C 1.37907 * 120.08684 * 241.65535 * 18 15 14 20 20 C 1.38380 * 120.16852 * 179.97438 * 19 18 15 21 21 C 1.38425 * 120.35204 * 0.02562 * 20 19 18 22 22 C 1.37870 * 120.17413 * 0.02562 * 21 20 19 23 23 C 1.39836 * 120.08507 * 61.37797 * 18 15 14 24 24 C 1.47171 * 120.17065 * 0.02562 * 23 18 15 25 25 O 1.21251 * 119.99840 * 353.92096 * 24 23 18 26 26 C 1.38636 * 120.49763 * 0.25839 * 12 11 10 27 27 C 1.37616 * 120.24943 * 359.44204 * 26 12 11 28 28 H 0.97000 * 119.99455 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.13224 * 0.02562 * 10 9 7 30 30 H 1.08007 * 119.87532 * 180.02562 * 11 10 9 31 31 H 1.08992 * 109.47002 * 330.00339 * 13 12 11 32 32 H 1.09003 * 109.47024 * 210.00240 * 13 12 11 33 33 H 0.97002 * 119.99556 * 344.19818 * 14 13 12 34 34 H 1.08001 * 119.91496 * 359.97438 * 19 18 15 35 35 H 1.08004 * 119.82576 * 179.97438 * 20 19 18 36 36 H 1.07998 * 119.91796 * 179.97438 * 21 20 19 37 37 H 1.07992 * 120.09070 * 179.97438 * 22 21 20 38 38 H 1.07995 * 119.99678 * 173.93070 * 24 23 18 39 39 H 1.08005 * 119.87389 * 179.69789 * 26 12 11 40 40 H 1.08003 * 120.12749 * 180.27247 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0729 -1.2208 0.1792 9 6 1.3207 -2.4250 -0.2363 10 6 1.7983 -3.6287 0.3140 11 6 1.1216 -4.8035 0.0775 12 6 -0.0262 -4.8040 -0.7000 13 6 -0.7581 -6.0970 -0.9522 14 7 -1.7608 -6.3030 0.0959 15 16 -2.9683 -7.4153 -0.1206 16 8 -3.5465 -7.1382 -1.3887 17 8 -3.7167 -7.4352 1.0871 18 6 -2.2026 -8.9964 -0.2577 19 6 -2.3395 -9.7327 -1.4157 20 6 -1.7385 -10.9743 -1.5254 21 6 -0.9964 -11.4875 -0.4756 22 6 -0.8511 -10.7640 0.6890 23 6 -1.4498 -9.5052 0.8051 24 6 -1.2942 -8.7234 2.0423 25 8 -1.7248 -7.5915 2.1024 26 6 -0.5026 -3.6248 -1.2520 27 6 0.1545 -2.4374 -1.0237 28 1 -0.4849 0.8401 -0.0004 29 1 2.6925 -3.6308 0.9197 30 1 1.4861 -5.7287 0.4992 31 1 -0.0482 -6.9239 -0.9435 32 1 -1.2515 -6.0518 -1.9231 33 1 -1.7173 -5.7879 0.9166 34 1 -2.9173 -9.3393 -2.2390 35 1 -1.8497 -11.5465 -2.4347 36 1 -0.5307 -12.4574 -0.5686 37 1 -0.2722 -11.1658 1.5073 38 1 -0.7962 -9.1578 2.8965 39 1 -1.3950 -3.6376 -1.8602 40 1 -0.2208 -1.5193 -1.4511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664692351.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:03 Heat of formation + Delta-G solvation = -49.229408 kcal Electronic energy + Delta-G solvation = -27182.562823 eV Core-core repulsion = 23247.686705 eV Total energy + Delta-G solvation = -3934.876118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.21251 -38.54604 -37.82163 -36.72657 -35.53201 -34.91587 -33.26545 -31.89863 -31.66052 -29.97218 -29.28915 -26.48081 -25.35440 -23.53121 -23.44991 -21.64747 -21.02361 -20.07379 -19.23289 -18.13464 -17.36056 -17.32200 -16.78359 -16.26383 -15.70977 -15.36891 -15.23024 -14.89681 -14.61727 -14.36986 -14.27289 -13.93687 -13.89673 -13.52580 -13.02555 -12.72938 -12.59894 -12.32710 -12.09748 -12.04948 -11.92871 -11.79075 -11.63451 -11.48210 -11.12950 -10.99936 -10.86201 -10.50349 -10.41508 -10.14529 -9.77151 -9.67965 -9.43155 -9.39512 -9.26035 -8.92832 -7.50482 -7.34117 -6.74633 -4.41633 0.01830 0.62282 0.76068 2.10904 2.65112 3.02856 3.06041 3.07168 3.11602 3.19817 3.49514 3.78510 3.91801 3.96555 4.23708 4.45722 4.61669 4.64795 4.77021 5.02984 5.14993 5.19301 5.43999 5.52446 5.62395 5.64311 5.71305 5.79190 5.87512 6.10523 6.25965 6.34784 6.38736 6.52802 6.92036 6.98719 7.05208 7.23209 7.32682 7.57954 7.64476 7.80682 8.02440 8.06600 8.26057 8.61124 8.85949 8.92589 10.18828 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.002677 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.544919 B =10456.549724 C =10723.017157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.460 4.460 8 H 0.078 0.922 9 C 0.115 3.885 10 C -0.225 4.225 11 C -0.075 4.075 12 C -0.225 4.225 13 C 0.181 3.819 14 N -1.090 6.090 15 S 2.698 3.302 16 O -0.971 6.971 17 O -0.955 6.955 18 C -0.627 4.627 19 C -0.035 4.035 20 C -0.111 4.111 21 C -0.085 4.085 22 C -0.091 4.091 23 C -0.091 4.091 24 C 0.357 3.643 25 O -0.416 6.416 26 C -0.085 4.085 27 C -0.161 4.161 28 H 0.280 0.720 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.426 0.574 34 H 0.148 0.852 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.123 0.877 39 H 0.091 0.909 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.121 -20.918 -0.289 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.490 4.490 8 H 0.096 0.904 9 C 0.112 3.888 10 C -0.245 4.245 11 C -0.094 4.094 12 C -0.228 4.228 13 C 0.056 3.944 14 N -0.855 5.855 15 S 2.784 3.216 16 O -0.961 6.961 17 O -0.945 6.945 18 C -0.710 4.710 19 C -0.054 4.054 20 C -0.130 4.130 21 C -0.104 4.104 22 C -0.110 4.110 23 C -0.093 4.093 24 C 0.212 3.788 25 O -0.286 6.286 26 C -0.104 4.104 27 C -0.181 4.181 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.264 0.736 34 H 0.166 0.834 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.139 0.861 39 H 0.109 0.891 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.461 -20.118 -0.453 20.273 hybrid contribution 1.051 0.173 0.330 1.115 sum -1.410 -19.945 -0.123 19.995 Atomic orbital electron populations 1.69804 1.07454 1.29092 1.35798 1.25928 0.94849 1.01336 0.92400 0.86209 0.80754 0.80877 0.78554 1.18489 1.19751 1.19972 1.19657 0.96036 0.90575 1.42701 0.90429 1.17686 0.91338 0.92065 0.87719 1.20999 1.03111 0.93391 1.06973 1.20361 0.95052 0.96367 0.97590 1.18901 1.00157 0.93126 1.10631 1.19907 0.89012 0.96364 0.89120 1.55685 1.46753 1.54007 1.29011 1.01899 0.73357 0.73114 0.73220 1.93560 1.74940 1.83584 1.44037 1.93579 1.69016 1.86162 1.45737 1.31707 1.13500 1.25528 1.00307 1.21067 0.95258 0.93588 0.95486 1.21570 0.96504 0.95700 0.99254 1.21424 0.96346 0.99655 0.92927 1.21495 0.97992 0.93051 0.98426 1.20682 0.97093 0.96363 0.95168 1.24367 0.77264 0.87177 0.89958 1.90559 1.35664 1.19253 1.83079 1.20626 0.98004 0.92732 0.99010 1.21385 0.98723 0.96505 1.01466 0.90876 0.88960 0.89554 0.93422 0.91387 0.73575 0.83399 0.84630 0.84696 0.84177 0.86065 0.89086 0.86111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.57 10.83 55.55 0.60 -19.97 16 2 C 0.07 1.80 5.25 -17.34 -0.09 1.71 16 3 Si 0.91 18.60 29.57 -169.99 -5.03 13.57 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.03 9.07 -37.74 -0.34 -12.37 16 8 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 9 C 0.11 3.00 5.55 -106.82 -0.59 2.41 16 10 C -0.23 -5.37 9.80 -38.87 -0.38 -5.75 16 11 C -0.07 -1.59 9.67 -39.66 -0.38 -1.98 16 12 C -0.22 -4.72 5.30 -104.33 -0.55 -5.27 16 13 C 0.18 3.11 6.32 -5.19 -0.03 3.08 16 14 N -1.09 -18.45 4.63 -11.66 -0.05 -18.50 16 15 S 2.70 43.66 4.89 -107.50 -0.53 43.13 16 16 O -0.97 -17.52 16.51 -57.17 -0.94 -18.46 16 17 O -0.95 -17.83 15.41 -67.15 -1.03 -18.86 16 18 C -0.63 -7.97 5.87 -39.11 -0.23 -8.20 16 19 C -0.03 -0.37 9.54 -39.65 -0.38 -0.75 16 20 C -0.11 -0.87 10.04 -39.46 -0.40 -1.27 16 21 C -0.09 -0.57 10.03 -39.65 -0.40 -0.97 16 22 C -0.09 -0.67 9.80 -39.10 -0.38 -1.05 16 23 C -0.09 -0.97 5.87 -105.06 -0.62 -1.59 16 24 C 0.36 3.81 11.30 34.36 0.39 4.19 16 25 O -0.42 -6.22 10.64 -18.92 -0.20 -6.42 16 26 C -0.08 -1.95 9.67 -39.66 -0.38 -2.34 16 27 C -0.16 -4.14 8.66 -38.87 -0.34 -4.48 16 28 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 29 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.09 1.61 8.06 -52.48 -0.42 1.18 16 31 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 32 H 0.07 1.14 7.72 -51.93 -0.40 0.74 16 33 H 0.43 7.62 7.41 -34.47 -0.26 7.36 16 34 H 0.15 1.50 7.34 -52.49 -0.39 1.11 16 35 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.09 1.95 8.06 -52.48 -0.42 1.53 16 40 H 0.12 3.23 6.20 -52.48 -0.33 2.90 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -33.31 354.86 -11.24 -44.56 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -4.29 Total: 10.23 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: -5.11 Total: -34.62 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.55 Total: -38.47 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -2.18 Total: -43.75 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 16 Polarization: 43.66 SS G_CDS: -0.53 Total: 43.13 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.31 -11.24 -44.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664692351.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.674 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds