Wall clock time and date at job start Wed Apr 1 2020 03:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86794 * 120.00218 * 2 1 4 4 H 1.48498 * 109.47369 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47236 * 299.99985 * 3 2 1 6 6 H 1.48501 * 109.47243 * 59.99970 * 3 2 1 7 7 C 1.39946 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99900 * 191.08110 * 7 2 1 9 9 C 1.41401 * 120.00009 * 11.07474 * 7 2 1 10 10 C 1.40710 * 120.24249 * 208.32256 * 9 7 2 11 11 C 1.37624 * 119.74281 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.25007 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.75030 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.47035 * 90.00735 * 13 12 11 15 15 S 1.65595 * 120.00122 * 164.20473 * 14 13 12 16 16 O 1.42103 * 106.40070 * 309.50816 * 15 14 13 17 17 O 1.42098 * 106.40133 * 176.59330 * 15 14 13 18 18 C 1.76202 * 107.22054 * 63.04826 * 15 14 13 19 19 C 1.37907 * 120.08684 * 241.65535 * 18 15 14 20 20 C 1.38380 * 120.16852 * 179.97438 * 19 18 15 21 21 C 1.38425 * 120.35204 * 0.02562 * 20 19 18 22 22 C 1.37870 * 120.17413 * 0.02562 * 21 20 19 23 23 C 1.39836 * 120.08507 * 61.37797 * 18 15 14 24 24 C 1.47171 * 120.17065 * 0.02562 * 23 18 15 25 25 O 1.21251 * 119.99840 * 353.92096 * 24 23 18 26 26 C 1.38636 * 120.49763 * 0.25839 * 12 11 10 27 27 C 1.37616 * 120.24943 * 359.44204 * 26 12 11 28 28 H 0.97000 * 119.99455 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.13224 * 0.02562 * 10 9 7 30 30 H 1.08007 * 119.87532 * 180.02562 * 11 10 9 31 31 H 1.08992 * 109.47002 * 330.00339 * 13 12 11 32 32 H 1.09003 * 109.47024 * 210.00240 * 13 12 11 33 33 H 0.97002 * 119.99556 * 344.19818 * 14 13 12 34 34 H 1.08001 * 119.91496 * 359.97438 * 19 18 15 35 35 H 1.08004 * 119.82576 * 179.97438 * 20 19 18 36 36 H 1.07998 * 119.91796 * 179.97438 * 21 20 19 37 37 H 1.07992 * 120.09070 * 179.97438 * 22 21 20 38 38 H 1.07995 * 119.99678 * 173.93070 * 24 23 18 39 39 H 1.08005 * 119.87389 * 179.69789 * 26 12 11 40 40 H 1.08003 * 120.12749 * 180.27247 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0729 -1.2208 0.1792 9 6 1.3207 -2.4250 -0.2363 10 6 1.7983 -3.6287 0.3140 11 6 1.1216 -4.8035 0.0775 12 6 -0.0262 -4.8040 -0.7000 13 6 -0.7581 -6.0970 -0.9522 14 7 -1.7608 -6.3030 0.0959 15 16 -2.9683 -7.4153 -0.1206 16 8 -3.5465 -7.1382 -1.3887 17 8 -3.7167 -7.4352 1.0871 18 6 -2.2026 -8.9964 -0.2577 19 6 -2.3395 -9.7327 -1.4157 20 6 -1.7385 -10.9743 -1.5254 21 6 -0.9964 -11.4875 -0.4756 22 6 -0.8511 -10.7640 0.6890 23 6 -1.4498 -9.5052 0.8051 24 6 -1.2942 -8.7234 2.0423 25 8 -1.7248 -7.5915 2.1024 26 6 -0.5026 -3.6248 -1.2520 27 6 0.1545 -2.4374 -1.0237 28 1 -0.4849 0.8401 -0.0004 29 1 2.6925 -3.6308 0.9197 30 1 1.4861 -5.7287 0.4992 31 1 -0.0482 -6.9239 -0.9435 32 1 -1.2515 -6.0518 -1.9231 33 1 -1.7173 -5.7879 0.9166 34 1 -2.9173 -9.3393 -2.2390 35 1 -1.8497 -11.5465 -2.4347 36 1 -0.5307 -12.4574 -0.5686 37 1 -0.2722 -11.1658 1.5073 38 1 -0.7962 -9.1578 2.8965 39 1 -1.3950 -3.6376 -1.8602 40 1 -0.2208 -1.5193 -1.4511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664692351.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:02 Heat of formation + Delta-G solvation = -70.430949 kcal Electronic energy + Delta-G solvation = -27183.482191 eV Core-core repulsion = 23247.686705 eV Total energy + Delta-G solvation = -3935.795486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.97642 -39.61227 -39.33884 -38.02400 -36.87045 -36.51034 -34.98915 -32.57377 -32.34308 -31.75144 -31.13904 -28.19929 -26.07445 -25.20295 -24.14465 -22.88587 -22.42879 -21.81546 -20.36224 -19.22128 -19.07302 -18.51577 -17.86379 -17.19726 -17.02221 -16.87592 -16.08673 -15.93327 -15.72942 -15.67206 -15.43589 -15.34340 -15.04425 -14.99318 -14.28338 -13.97326 -13.84698 -13.73710 -13.65188 -13.41619 -13.16565 -13.14158 -12.99689 -12.81349 -12.72479 -12.64446 -12.32072 -12.05830 -11.77343 -11.47327 -11.25116 -11.09463 -10.97476 -10.45167 -10.24432 -10.08296 -9.37712 -9.21684 -8.60186 -6.37631 -0.75257 -0.46736 0.03678 0.89467 1.14592 1.37986 1.41669 1.47369 1.53203 2.13651 2.21046 2.55611 2.75894 2.83113 3.14401 3.43023 3.71859 3.81824 4.01249 4.05114 4.20112 4.29697 4.33453 4.46587 4.52127 4.53772 4.60736 4.67276 4.86083 4.95283 5.04943 5.13139 5.15521 5.16633 5.29763 5.36725 5.44581 5.70779 5.77851 5.92641 6.07188 6.10761 6.21651 6.37526 6.46157 6.70249 6.93716 7.02233 8.35760 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.002677 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.544919 B =10456.549724 C =10723.017157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.029 3.971 3 Si 0.986 3.014 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.497 4.497 8 H 0.077 0.923 9 C 0.082 3.918 10 C -0.237 4.237 11 C -0.070 4.070 12 C -0.211 4.211 13 C 0.186 3.814 14 N -1.095 6.095 15 S 2.706 3.294 16 O -1.004 7.004 17 O -0.988 6.988 18 C -0.644 4.644 19 C -0.054 4.054 20 C -0.108 4.108 21 C -0.074 4.074 22 C -0.076 4.076 23 C -0.113 4.113 24 C 0.355 3.645 25 O -0.468 6.468 26 C -0.095 4.095 27 C -0.186 4.186 28 H 0.286 0.714 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.420 0.580 34 H 0.141 0.859 35 H 0.166 0.834 36 H 0.178 0.822 37 H 0.184 0.816 38 H 0.176 0.824 39 H 0.099 0.901 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 -24.854 0.088 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.185 4.185 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.527 4.527 8 H 0.095 0.905 9 C 0.079 3.921 10 C -0.257 4.257 11 C -0.089 4.089 12 C -0.214 4.214 13 C 0.061 3.939 14 N -0.857 5.857 15 S 2.799 3.201 16 O -0.994 6.994 17 O -0.979 6.979 18 C -0.734 4.734 19 C -0.074 4.074 20 C -0.127 4.127 21 C -0.092 4.092 22 C -0.094 4.094 23 C -0.116 4.116 24 C 0.214 3.786 25 O -0.341 6.341 26 C -0.114 4.114 27 C -0.206 4.206 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.141 0.859 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.257 0.743 34 H 0.159 0.841 35 H 0.184 0.816 36 H 0.196 0.804 37 H 0.202 0.798 38 H 0.192 0.808 39 H 0.118 0.882 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.621 -24.020 -0.081 24.029 hybrid contribution 0.442 1.009 0.180 1.117 sum -0.178 -23.011 0.100 23.012 Atomic orbital electron populations 1.69883 1.08984 1.30250 1.36889 1.26807 0.95596 1.04668 0.91412 0.85096 0.79354 0.76075 0.78772 1.17916 1.19076 1.19263 1.19900 0.96237 0.91712 1.44831 0.90456 1.18025 0.92035 0.93327 0.88663 1.21232 1.03741 0.93604 1.07084 1.20703 0.94464 0.96985 0.96756 1.19277 0.99772 0.93923 1.08450 1.19892 0.89452 0.95241 0.89355 1.55513 1.46603 1.55186 1.28396 1.01080 0.73063 0.74071 0.71888 1.93511 1.76121 1.84877 1.44932 1.93527 1.70310 1.87144 1.46930 1.30945 1.16241 1.23507 1.02688 1.21215 0.96265 0.95131 0.94789 1.21975 0.95353 0.94347 1.01014 1.22018 0.94566 1.00855 0.91720 1.22030 0.96405 0.91087 0.99881 1.20951 0.97874 0.98138 0.94613 1.25301 0.75786 0.86261 0.91243 1.90551 1.38162 1.21614 1.83811 1.20843 0.98205 0.92950 0.99379 1.21315 0.99736 0.96706 1.02803 0.90368 0.88053 0.85881 0.90346 0.91214 0.74262 0.84099 0.81650 0.80436 0.79827 0.80807 0.88248 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.15 10.83 21.83 0.24 -44.92 16 2 C 0.03 1.48 5.25 85.26 0.45 1.93 16 3 Si 0.99 39.10 29.57 68.60 2.03 41.13 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 6 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 7 C -0.50 -27.10 9.07 23.46 0.21 -26.88 16 8 H 0.08 4.04 7.87 -2.91 -0.02 4.01 16 9 C 0.08 4.47 5.55 -21.29 -0.12 4.35 16 10 C -0.24 -11.43 9.80 22.73 0.22 -11.20 16 11 C -0.07 -2.94 9.67 22.22 0.21 -2.72 16 12 C -0.21 -8.83 5.30 -19.67 -0.10 -8.93 16 13 C 0.19 6.24 6.32 85.63 0.54 6.78 16 14 N -1.09 -37.40 4.63 -190.79 -0.88 -38.29 16 15 S 2.71 89.85 4.89 -56.49 -0.28 89.57 16 16 O -1.00 -37.72 16.51 -128.00 -2.11 -39.84 16 17 O -0.99 -38.48 15.41 -118.46 -1.83 -40.31 16 18 C -0.64 -15.56 5.87 22.58 0.13 -15.43 16 19 C -0.05 -1.07 9.54 22.22 0.21 -0.86 16 20 C -0.11 -1.24 10.04 22.35 0.22 -1.01 16 21 C -0.07 -0.54 10.03 22.23 0.22 -0.32 16 22 C -0.08 -0.68 9.80 22.58 0.22 -0.46 16 23 C -0.11 -2.06 5.87 -20.15 -0.12 -2.18 16 24 C 0.35 6.69 11.30 70.17 0.79 7.48 16 25 O -0.47 -13.83 10.64 20.48 0.22 -13.62 16 26 C -0.09 -4.52 9.67 22.22 0.21 -4.30 16 27 C -0.19 -10.06 8.66 22.73 0.20 -9.86 16 28 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 29 H 0.10 4.58 8.06 -2.91 -0.02 4.55 16 30 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 31 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 32 H 0.07 2.32 7.72 -2.39 -0.02 2.30 16 33 H 0.42 15.48 7.41 -96.74 -0.72 14.76 16 34 H 0.14 2.83 7.34 -2.91 -0.02 2.81 16 35 H 0.17 0.85 8.06 -2.91 -0.02 0.82 16 36 H 0.18 -0.13 8.06 -2.91 -0.02 -0.15 16 37 H 0.18 0.03 8.06 -2.91 -0.02 0.01 16 38 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 39 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 40 H 0.10 5.71 6.20 -2.91 -0.02 5.69 16 Total: -1.00 -79.13 354.86 1.27 -77.86 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.37 Total: 32.03 kcal Atomic # 6 Polarization: -67.14 SS G_CDS: 3.52 Total: -63.63 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -0.65 Total: -83.20 kcal Atomic # 8 Polarization: -90.04 SS G_CDS: -3.72 Total: -93.76 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Atomic # 16 Polarization: 89.85 SS G_CDS: -0.28 Total: 89.57 kcal Total: -79.13 1.27 -77.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664692351.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.432 kcal (2) G-P(sol) polarization free energy of solvation -79.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds