Wall clock time and date at job start Wed Apr 1 2020 03:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86804 * 120.00131 * 2 1 4 4 H 1.48498 * 109.47083 * 240.00634 * 3 2 1 5 5 H 1.48507 * 109.46723 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47109 * 119.99972 * 3 2 1 7 7 C 1.39945 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00218 * 168.74869 * 7 2 1 9 9 C 1.41393 * 119.99912 * 348.75560 * 7 2 1 10 10 C 1.40732 * 120.24332 * 330.86804 * 9 7 2 11 11 C 1.37605 * 119.74644 * 179.97438 * 10 9 7 12 12 C 1.38657 * 120.24812 * 359.97438 * 11 10 9 13 13 C 1.38612 * 120.49771 * 359.97438 * 12 11 10 14 14 C 1.37638 * 120.25254 * 0.02562 * 13 12 11 15 15 S 1.76199 * 120.12727 * 180.02562 * 14 13 12 16 16 O 1.42098 * 106.40066 * 227.78170 * 15 14 13 17 17 O 1.42099 * 106.40543 * 0.70386 * 15 14 13 18 18 N 1.65599 * 107.21862 * 114.24218 * 15 14 13 19 19 C 1.46639 * 126.57278 * 96.45618 * 18 15 14 20 20 C 1.50791 * 107.70398 * 179.97438 * 19 18 15 21 21 C 1.38481 * 131.17039 * 180.02562 * 20 19 18 22 22 C 1.38178 * 120.21978 * 179.97438 * 21 20 19 23 23 C 1.38166 * 120.02168 * 0.02562 * 22 21 20 24 24 C 1.38638 * 119.89850 * 359.97438 * 23 22 21 25 25 O 1.35901 * 120.00521 * 180.02562 * 24 23 22 26 26 C 1.37971 * 108.85689 * 0.02562 * 20 19 18 27 27 C 1.46634 * 126.57380 * 276.14418 * 18 15 14 28 28 H 0.96997 * 120.00404 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.12758 * 359.95577 * 10 9 7 30 30 H 1.07997 * 119.87214 * 180.02562 * 11 10 9 31 31 H 1.07995 * 119.74719 * 179.72982 * 12 11 10 32 32 H 1.08004 * 119.87143 * 179.97438 * 13 12 11 33 33 H 1.09004 * 109.81459 * 299.53018 * 19 18 15 34 34 H 1.09004 * 109.80925 * 60.36227 * 19 18 15 35 35 H 1.08004 * 119.89634 * 359.96143 * 21 20 19 36 36 H 1.07996 * 119.98802 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.04898 * 180.02562 * 23 22 21 38 38 H 0.96705 * 113.99978 * 269.97626 * 25 24 23 39 39 H 1.09003 * 109.81726 * 299.56565 * 27 18 15 40 40 H 1.09009 * 109.81420 * 60.47722 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0959 1.6965 -1.2126 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0724 -1.2208 -0.1830 9 6 1.3214 -2.4248 0.2377 10 6 0.1662 -2.4394 1.0414 11 6 -0.4943 -3.6254 1.2661 12 6 -0.0260 -4.8031 0.7036 13 6 1.1101 -4.8003 -0.0905 14 6 1.7867 -3.6257 -0.3288 15 16 3.2301 -3.6259 -1.3393 16 8 4.2153 -2.8856 -0.6318 17 8 3.4227 -4.9682 -1.7638 18 7 2.8759 -2.7514 -2.7002 19 6 3.1825 -1.3366 -2.9340 20 6 2.6735 -0.9780 -4.3074 21 6 2.7072 0.2153 -5.0093 22 6 2.1638 0.2919 -6.2774 23 6 1.5836 -0.8240 -6.8494 24 6 1.5482 -2.0201 -6.1493 25 8 0.9785 -3.1192 -6.7100 26 6 2.0952 -2.0950 -4.8743 27 6 2.2012 -3.2449 -3.9049 28 1 -0.4850 0.8400 0.0004 29 1 -0.2002 -1.5233 1.4804 30 1 -1.3811 -3.6389 1.8822 31 1 -0.5482 -5.7301 0.8888 32 1 1.4661 -5.7236 -0.5233 33 1 2.6854 -0.7218 -2.1836 34 1 4.2600 -1.1792 -2.8856 35 1 3.1597 1.0891 -4.5641 36 1 2.1918 1.2245 -6.8213 37 1 1.1590 -0.7648 -7.8406 38 1 0.0339 -3.2108 -6.5241 39 1 2.7823 -4.0531 -4.3490 40 1 1.2038 -3.6029 -3.6494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665104459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:24 Heat of formation + Delta-G solvation = -59.359632 kcal Electronic energy + Delta-G solvation = -28581.649626 eV Core-core repulsion = 24646.334228 eV Total energy + Delta-G solvation = -3935.315397 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.31557 -37.67864 -37.42574 -36.40709 -35.73975 -34.99344 -33.97927 -30.45385 -30.35093 -30.18591 -29.60775 -27.38628 -25.59140 -24.17670 -21.71560 -21.43348 -21.40046 -21.17972 -18.38462 -17.99331 -17.77855 -17.02775 -16.21116 -15.94523 -15.60773 -15.56356 -15.11775 -14.95567 -14.61849 -14.30163 -13.98207 -13.42512 -13.22352 -12.92054 -12.80612 -12.57862 -12.53040 -12.08593 -11.97566 -11.89146 -11.56803 -11.34871 -11.31697 -11.30152 -11.23069 -11.20039 -11.12538 -10.64895 -10.57945 -10.48341 -9.96301 -9.51923 -9.40279 -9.00232 -8.51784 -8.12407 -8.03790 -7.66083 -7.12165 -4.86094 1.26342 1.31282 1.33332 2.27509 2.66831 2.89393 2.93141 3.04394 3.61125 3.68209 3.76155 4.25524 4.30405 4.37367 4.65909 4.73413 5.01628 5.21084 5.30762 5.34949 5.48566 5.66076 5.74892 5.84095 5.94162 5.99023 6.02517 6.17628 6.21774 6.31881 6.34596 6.41808 6.52070 6.56499 6.71771 6.80877 6.85138 6.94999 7.07659 7.27171 7.44962 7.62583 7.65533 7.74866 7.86900 8.27522 8.42806 8.58672 9.80561 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.009700 B = 0.005874 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.862245 B = 4765.395802 C = 6058.342591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.080 3.920 3 Si 0.904 3.096 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.476 4.476 8 H 0.114 0.886 9 C 0.193 3.807 10 C -0.156 4.156 11 C -0.076 4.076 12 C -0.246 4.246 13 C -0.003 4.003 14 C -0.776 4.776 15 S 2.725 3.275 16 O -0.964 6.964 17 O -0.987 6.987 18 N -1.003 6.003 19 C 0.156 3.844 20 C -0.071 4.071 21 C -0.111 4.111 22 C -0.102 4.102 23 C -0.149 4.149 24 C 0.124 3.876 25 O -0.498 6.498 26 C -0.123 4.123 27 C 0.176 3.824 28 H 0.288 0.712 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.390 0.610 39 H 0.082 0.918 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.496 3.082 -9.440 9.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.504 4.504 8 H 0.132 0.868 9 C 0.188 3.812 10 C -0.176 4.176 11 C -0.095 4.095 12 C -0.267 4.267 13 C -0.023 4.023 14 C -0.872 4.872 15 S 2.826 3.174 16 O -0.955 6.955 17 O -0.978 6.978 18 N -0.837 5.837 19 C 0.031 3.969 20 C -0.072 4.072 21 C -0.129 4.129 22 C -0.121 4.121 23 C -0.168 4.168 24 C 0.079 3.921 25 O -0.309 6.309 26 C -0.125 4.125 27 C 0.051 3.949 28 H 0.099 0.901 29 H 0.143 0.857 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.246 0.754 39 H 0.100 0.900 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.735 2.673 -9.428 9.827 hybrid contribution -1.254 1.011 0.383 1.656 sum -0.519 3.684 -9.044 9.780 Atomic orbital electron populations 1.69774 1.07723 1.30238 1.32134 1.26006 0.94833 1.01707 0.91598 0.86389 0.80367 0.79311 0.81224 1.17798 1.19887 1.18003 1.20451 0.98087 0.90499 1.41401 0.86813 1.17007 0.89738 0.89665 0.84740 1.21534 0.98331 0.96812 1.00922 1.20929 0.97592 0.93514 0.97506 1.20511 1.00758 0.97071 1.08332 1.20250 0.92942 0.95133 0.94002 1.29820 1.28536 1.01165 1.27700 1.00450 0.74558 0.71161 0.71267 1.93480 1.58358 1.72549 1.71122 1.93454 1.86557 1.35435 1.82364 1.58404 1.74763 1.20551 1.30028 1.20331 1.00340 0.82555 0.93712 1.20482 0.97404 0.93435 0.95912 1.20539 1.01025 0.96762 0.94584 1.20878 0.98082 0.98132 0.94968 1.21226 1.03012 0.91830 1.00686 1.17852 0.98109 0.86456 0.89636 1.84799 1.28062 1.42873 1.75128 1.20750 1.01122 0.96656 0.93978 1.19749 0.97854 0.93992 0.83344 0.90091 0.85735 0.88751 0.88609 0.87344 0.87403 0.90375 0.85534 0.85358 0.85282 0.75438 0.90031 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.76 10.89 55.55 0.61 -17.15 16 2 C 0.08 1.79 4.93 -17.34 -0.09 1.71 16 3 Si 0.90 16.90 29.28 -169.99 -4.98 11.92 16 4 H -0.25 -4.46 7.11 56.52 0.40 -4.06 16 5 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 7 C -0.48 -11.48 6.13 -37.74 -0.23 -11.71 16 8 H 0.11 2.75 4.83 -52.49 -0.25 2.50 16 9 C 0.19 4.82 5.54 -106.83 -0.59 4.22 16 10 C -0.16 -3.79 8.66 -38.87 -0.34 -4.12 16 11 C -0.08 -1.69 10.02 -39.66 -0.40 -2.08 16 12 C -0.25 -5.31 10.05 -39.29 -0.39 -5.71 16 13 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 14 C -0.78 -18.43 5.97 -38.87 -0.23 -18.66 16 15 S 2.73 60.43 5.32 -107.50 -0.57 59.86 16 16 O -0.96 -23.06 15.18 -57.17 -0.87 -23.93 16 17 O -0.99 -22.63 16.68 -57.17 -0.95 -23.58 16 18 N -1.00 -19.60 3.67 -116.64 -0.43 -20.03 16 19 C 0.16 2.83 6.48 -5.07 -0.03 2.80 16 20 C -0.07 -1.14 6.22 -104.59 -0.65 -1.79 16 21 C -0.11 -1.49 10.04 -39.51 -0.40 -1.88 16 22 C -0.10 -1.18 10.04 -39.63 -0.40 -1.58 16 23 C -0.15 -1.78 9.99 -39.46 -0.39 -2.17 16 24 C 0.12 1.72 6.71 -39.18 -0.26 1.46 16 25 O -0.50 -6.11 13.47 -19.43 -0.26 -6.37 16 26 C -0.12 -1.97 6.18 -104.43 -0.65 -2.61 16 27 C 0.18 3.04 7.06 -5.09 -0.04 3.01 16 28 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16 29 H 0.12 3.04 6.27 -52.49 -0.33 2.71 16 30 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 31 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.11 2.25 7.32 -52.48 -0.38 1.87 16 33 H 0.11 2.11 5.04 -51.93 -0.26 1.85 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.39 3.06 9.06 45.56 0.41 3.47 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -29.69 344.90 -11.05 -40.75 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -3.33 Total: 12.93 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: -5.46 Total: -39.59 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.18 Total: -37.18 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -2.08 Total: -53.88 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -4.98 Total: 11.92 kcal Atomic # 16 Polarization: 60.43 SS G_CDS: -0.57 Total: 59.86 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.69 -11.05 -40.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665104459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.613 kcal (2) G-P(sol) polarization free energy of solvation -29.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds