Wall clock time and date at job start Wed Apr 1 2020 03:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86807 * 119.99927 * 2 1 4 4 H 1.48495 * 109.46894 * 274.52544 * 3 2 1 5 5 H 1.48502 * 109.46836 * 34.52200 * 3 2 1 6 6 H 1.48491 * 109.47097 * 154.52564 * 3 2 1 7 7 C 1.39943 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00151 * 162.10670 * 7 2 1 9 9 C 1.41398 * 120.00161 * 341.83072 * 7 2 1 10 10 C 1.40716 * 120.24078 * 335.09075 * 9 7 2 11 11 C 1.37626 * 119.74005 * 179.74390 * 10 9 7 12 12 C 1.38630 * 120.24970 * 0.52717 * 11 10 9 13 13 S 1.76196 * 119.75165 * 179.74558 * 12 11 10 14 14 O 1.42102 * 106.40274 * 23.51626 * 13 12 11 15 15 O 1.42094 * 106.40508 * 156.43882 * 13 12 11 16 16 N 1.65602 * 107.21713 * 269.98102 * 13 12 11 17 17 C 1.46635 * 126.56829 * 269.68790 * 16 13 12 18 18 C 1.50796 * 107.69870 * 179.84819 * 17 16 13 19 19 C 1.38494 * 131.16935 * 180.12634 * 18 17 16 20 20 C 1.38169 * 120.21727 * 180.32477 * 19 18 17 21 21 C 1.38158 * 120.02832 * 359.97438 * 20 19 18 22 22 C 1.38643 * 119.89881 * 0.02562 * 21 20 19 23 23 O 1.35903 * 120.01088 * 180.02562 * 22 21 20 24 24 C 1.37968 * 108.86126 * 0.42247 * 18 17 16 25 25 C 1.46638 * 126.57297 * 89.99538 * 16 13 12 26 26 C 1.38633 * 120.49967 * 359.72084 * 12 11 10 27 27 C 1.37621 * 120.25189 * 0.02562 * 26 12 11 28 28 H 0.96998 * 120.00159 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.12837 * 359.96637 * 10 9 7 30 30 H 1.07999 * 119.87076 * 180.23278 * 11 10 9 31 31 H 1.09006 * 109.81320 * 299.54203 * 17 16 13 32 32 H 1.09001 * 109.81445 * 60.45154 * 17 16 13 33 33 H 1.07996 * 119.88824 * 0.32223 * 19 18 17 34 34 H 1.08004 * 119.98186 * 179.97438 * 20 19 18 35 35 H 1.07996 * 120.05122 * 179.97438 * 21 20 19 36 36 H 0.96695 * 113.99677 * 269.97836 * 23 22 21 37 37 H 1.08998 * 109.81646 * 299.54559 * 25 16 13 38 38 H 1.08996 * 109.81434 * 60.39335 * 25 16 13 39 39 H 1.08007 * 119.87369 * 179.97438 * 26 12 11 40 40 H 1.08001 * 120.13139 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3941 2.1017 -1.3957 5 1 1.4907 2.6232 0.7935 6 1 3.5843 1.4145 0.6021 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2347 -0.2868 9 6 1.3539 -2.4058 0.3829 10 6 0.2333 -2.3591 1.2327 11 6 -0.3987 -3.5270 1.5941 12 6 0.0714 -4.7470 1.1330 13 16 -0.7437 -6.2346 1.6094 14 8 -2.0730 -5.8708 1.9554 15 8 -0.4364 -7.1979 0.6110 16 7 -0.0250 -6.7621 3.0050 17 6 1.1213 -7.6707 3.1080 18 6 1.4252 -7.8611 4.5727 19 6 2.3988 -8.6105 5.2118 20 6 2.4691 -8.6274 6.5916 21 6 1.5669 -7.8950 7.3389 22 6 0.5911 -7.1437 6.7021 23 8 -0.2972 -6.4220 7.4350 24 6 0.5217 -7.1284 5.3146 25 6 -0.4169 -6.4150 4.3747 26 6 1.1777 -4.8052 0.2996 27 6 1.8223 -3.6497 -0.0789 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1316 -1.4101 1.5969 30 1 -1.2612 -3.4933 2.2431 31 1 0.8749 -8.6295 2.6518 32 1 1.9853 -7.2336 2.6075 33 1 3.1053 -9.1836 4.6298 34 1 3.2296 -9.2135 7.0862 35 1 1.6213 -7.9083 8.4174 36 1 -1.1013 -6.9065 7.6668 37 1 -0.3371 -5.3377 4.5201 38 1 -1.4416 -6.7377 4.5589 39 1 1.5357 -5.7612 -0.0533 40 1 2.6842 -3.6974 -0.7279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671079567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:16 Heat of formation + Delta-G solvation = -64.630628 kcal Electronic energy + Delta-G solvation = -27112.039155 eV Core-core repulsion = 23176.495190 eV Total energy + Delta-G solvation = -3935.543965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.57167 -37.67871 -37.58980 -36.59431 -35.98453 -35.21931 -34.05768 -30.65131 -30.56748 -30.27775 -29.49270 -27.64489 -25.84202 -24.43537 -21.72011 -21.66378 -21.47417 -21.14046 -18.69405 -18.19272 -17.63637 -17.24479 -16.76994 -16.13806 -15.86773 -15.50851 -15.37714 -15.25475 -14.76607 -14.20829 -14.12848 -13.46103 -13.24022 -13.16843 -12.88696 -12.80706 -12.46832 -12.26088 -12.20909 -12.12450 -11.77257 -11.59614 -11.51812 -11.44312 -11.42328 -11.35949 -11.24194 -10.89039 -10.71943 -10.48384 -9.83131 -9.71705 -9.50567 -9.26505 -8.75160 -8.39015 -7.97743 -7.72707 -7.16180 -4.81742 1.02744 1.03397 1.08061 2.23517 2.85969 2.88433 2.91092 2.95220 3.37658 3.54286 3.65584 4.03035 4.08495 4.22758 4.41316 4.49836 4.81147 4.98600 5.07250 5.23259 5.33754 5.42270 5.46106 5.53605 5.63920 5.69637 5.81537 6.03081 6.07335 6.10369 6.18172 6.21115 6.26076 6.53515 6.58732 6.66466 6.72402 6.93256 7.02718 7.31996 7.40156 7.47342 7.60737 7.74746 7.94682 8.29691 8.49070 8.62897 9.75677 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.003132 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.824665 B = 8937.500989 C = 9732.659420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.434 4.434 8 H 0.088 0.912 9 C 0.140 3.860 10 C -0.182 4.182 11 C -0.015 4.015 12 C -0.788 4.788 13 S 2.712 3.288 14 O -0.973 6.973 15 O -0.975 6.975 16 N -1.016 6.016 17 C 0.166 3.834 18 C -0.081 4.081 19 C -0.108 4.108 20 C -0.102 4.102 21 C -0.145 4.145 22 C 0.126 3.874 23 O -0.496 6.496 24 C -0.123 4.123 25 C 0.173 3.827 26 C 0.002 3.998 27 C -0.238 4.238 28 H 0.290 0.710 29 H 0.122 0.878 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.390 0.610 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.930 -11.506 12.083 16.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.151 4.151 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.203 4.203 11 C -0.035 4.035 12 C -0.885 4.885 13 S 2.813 3.187 14 O -0.964 6.964 15 O -0.966 6.966 16 N -0.850 5.850 17 C 0.040 3.960 18 C -0.082 4.082 19 C -0.126 4.126 20 C -0.120 4.120 21 C -0.163 4.163 22 C 0.081 3.919 23 O -0.306 6.306 24 C -0.125 4.125 25 C 0.048 3.952 26 C -0.018 4.018 27 C -0.258 4.258 28 H 0.101 0.899 29 H 0.139 0.861 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.246 0.754 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.122 0.878 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.339 -11.347 11.516 16.335 hybrid contribution 0.483 1.080 0.108 1.188 sum 2.822 -10.267 11.623 15.764 Atomic orbital electron populations 1.69824 1.07952 1.30485 1.30234 1.26156 0.94893 1.02181 0.91836 0.86143 0.80781 0.79586 0.79528 1.19065 1.19542 1.17979 1.19952 0.98571 0.91259 1.36322 0.89376 1.17855 0.89971 0.92155 0.86372 1.21320 0.99893 0.96888 1.02153 1.20247 0.95887 0.91771 0.95602 1.29131 1.19078 1.15205 1.25048 1.00837 0.73087 0.74126 0.70623 1.93491 1.34464 1.84861 1.83540 1.93482 1.85552 1.61571 1.55950 1.58834 1.45373 1.60841 1.19906 1.19951 0.89293 0.94269 0.92452 1.20390 0.95528 0.96862 0.95415 1.20534 0.98060 0.99651 0.94358 1.20919 0.98738 0.99041 0.93347 1.21296 0.96792 0.97747 1.00505 1.17882 0.92921 0.93832 0.87262 1.84844 1.32090 1.40976 1.72668 1.20764 0.98988 0.99484 0.93244 1.19795 0.96709 0.99532 0.79187 1.20155 0.91805 0.97448 0.92432 1.21022 1.04349 0.92781 1.07685 0.89881 0.86065 0.87868 0.89731 0.89851 0.85341 0.85154 0.85054 0.75418 0.89806 0.90135 0.87800 0.88113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.36 11.01 55.55 0.61 -17.74 16 2 C 0.07 1.66 5.13 -17.34 -0.09 1.58 16 3 Si 0.92 17.02 29.60 -169.99 -5.03 11.99 16 4 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 7 C -0.43 -10.66 9.05 -37.74 -0.34 -11.00 16 8 H 0.09 2.04 7.91 -52.49 -0.42 1.62 16 9 C 0.14 3.57 5.57 -106.83 -0.59 2.98 16 10 C -0.18 -4.60 8.70 -38.87 -0.34 -4.93 16 11 C -0.01 -0.34 9.49 -39.66 -0.38 -0.72 16 12 C -0.79 -17.58 6.00 -39.29 -0.24 -17.82 16 13 S 2.71 53.48 5.96 -107.50 -0.64 52.84 16 14 O -0.97 -21.05 16.89 -57.17 -0.97 -22.01 16 15 O -0.97 -20.58 16.88 -57.17 -0.97 -21.54 16 16 N -1.02 -16.46 3.72 -116.65 -0.43 -16.89 16 17 C 0.17 2.27 7.03 -5.07 -0.04 2.24 16 18 C -0.08 -1.00 6.22 -104.58 -0.65 -1.65 16 19 C -0.11 -1.07 10.04 -39.51 -0.40 -1.47 16 20 C -0.10 -0.90 10.04 -39.64 -0.40 -1.30 16 21 C -0.14 -1.39 9.99 -39.46 -0.39 -1.79 16 22 C 0.13 1.45 6.71 -39.17 -0.26 1.19 16 23 O -0.50 -5.17 13.47 -19.44 -0.26 -5.43 16 24 C -0.12 -1.62 6.18 -104.42 -0.65 -2.26 16 25 C 0.17 2.53 7.00 -5.08 -0.04 2.50 16 26 C 0.00 0.04 9.49 -39.66 -0.38 -0.34 16 27 C -0.24 -5.63 9.80 -38.87 -0.38 -6.01 16 28 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 29 H 0.12 3.09 6.21 -52.49 -0.33 2.76 16 30 H 0.10 2.25 7.60 -52.49 -0.40 1.85 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.39 2.15 9.06 45.56 0.41 2.56 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.10 2.07 7.60 -52.48 -0.40 1.68 16 40 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -31.64 356.73 -11.50 -43.14 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -3.64 Total: 9.11 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: -5.55 Total: -38.82 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.18 Total: -34.64 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -2.19 Total: -48.99 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Atomic # 16 Polarization: 53.48 SS G_CDS: -0.64 Total: 52.84 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.64 -11.50 -43.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671079567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.490 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds