Wall clock time and date at job start Wed Apr 1 2020 03:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86807 * 119.99927 * 2 1 4 4 H 1.48495 * 109.46894 * 274.52544 * 3 2 1 5 5 H 1.48502 * 109.46836 * 34.52200 * 3 2 1 6 6 H 1.48491 * 109.47097 * 154.52564 * 3 2 1 7 7 C 1.39943 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00151 * 162.10670 * 7 2 1 9 9 C 1.41398 * 120.00161 * 341.83072 * 7 2 1 10 10 C 1.40716 * 120.24078 * 335.09075 * 9 7 2 11 11 C 1.37626 * 119.74005 * 179.74390 * 10 9 7 12 12 C 1.38630 * 120.24970 * 0.52717 * 11 10 9 13 13 S 1.76196 * 119.75165 * 179.74558 * 12 11 10 14 14 O 1.42102 * 106.40274 * 23.51626 * 13 12 11 15 15 O 1.42094 * 106.40508 * 156.43882 * 13 12 11 16 16 N 1.65602 * 107.21713 * 269.98102 * 13 12 11 17 17 C 1.46635 * 126.56829 * 269.68790 * 16 13 12 18 18 C 1.50796 * 107.69870 * 179.84819 * 17 16 13 19 19 C 1.38494 * 131.16935 * 180.12634 * 18 17 16 20 20 C 1.38169 * 120.21727 * 180.32477 * 19 18 17 21 21 C 1.38158 * 120.02832 * 359.97438 * 20 19 18 22 22 C 1.38643 * 119.89881 * 0.02562 * 21 20 19 23 23 O 1.35903 * 120.01088 * 180.02562 * 22 21 20 24 24 C 1.37968 * 108.86126 * 0.42247 * 18 17 16 25 25 C 1.46638 * 126.57297 * 89.99538 * 16 13 12 26 26 C 1.38633 * 120.49967 * 359.72084 * 12 11 10 27 27 C 1.37621 * 120.25189 * 0.02562 * 26 12 11 28 28 H 0.96998 * 120.00159 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.12837 * 359.96637 * 10 9 7 30 30 H 1.07999 * 119.87076 * 180.23278 * 11 10 9 31 31 H 1.09006 * 109.81320 * 299.54203 * 17 16 13 32 32 H 1.09001 * 109.81445 * 60.45154 * 17 16 13 33 33 H 1.07996 * 119.88824 * 0.32223 * 19 18 17 34 34 H 1.08004 * 119.98186 * 179.97438 * 20 19 18 35 35 H 1.07996 * 120.05122 * 179.97438 * 21 20 19 36 36 H 0.96695 * 113.99677 * 269.97836 * 23 22 21 37 37 H 1.08998 * 109.81646 * 299.54559 * 25 16 13 38 38 H 1.08996 * 109.81434 * 60.39335 * 25 16 13 39 39 H 1.08007 * 119.87369 * 179.97438 * 26 12 11 40 40 H 1.08001 * 120.13139 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3941 2.1017 -1.3957 5 1 1.4907 2.6232 0.7935 6 1 3.5843 1.4145 0.6021 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2347 -0.2868 9 6 1.3539 -2.4058 0.3829 10 6 0.2333 -2.3591 1.2327 11 6 -0.3987 -3.5270 1.5941 12 6 0.0714 -4.7470 1.1330 13 16 -0.7437 -6.2346 1.6094 14 8 -2.0730 -5.8708 1.9554 15 8 -0.4364 -7.1979 0.6110 16 7 -0.0250 -6.7621 3.0050 17 6 1.1213 -7.6707 3.1080 18 6 1.4252 -7.8611 4.5727 19 6 2.3988 -8.6105 5.2118 20 6 2.4691 -8.6274 6.5916 21 6 1.5669 -7.8950 7.3389 22 6 0.5911 -7.1437 6.7021 23 8 -0.2972 -6.4220 7.4350 24 6 0.5217 -7.1284 5.3146 25 6 -0.4169 -6.4150 4.3747 26 6 1.1777 -4.8052 0.2996 27 6 1.8223 -3.6497 -0.0789 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1316 -1.4101 1.5969 30 1 -1.2612 -3.4933 2.2431 31 1 0.8749 -8.6295 2.6518 32 1 1.9853 -7.2336 2.6075 33 1 3.1053 -9.1836 4.6298 34 1 3.2296 -9.2135 7.0862 35 1 1.6213 -7.9083 8.4174 36 1 -1.1013 -6.9065 7.6668 37 1 -0.3371 -5.3377 4.5201 38 1 -1.4416 -6.7377 4.5589 39 1 1.5357 -5.7612 -0.0533 40 1 2.6842 -3.6974 -0.7279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671079567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:15 Heat of formation + Delta-G solvation = -85.907393 kcal Electronic energy + Delta-G solvation = -27112.961785 eV Core-core repulsion = 23176.495190 eV Total energy + Delta-G solvation = -3936.466595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45397 -39.41987 -38.58687 -38.28038 -36.92266 -36.86449 -35.84142 -32.11755 -31.61541 -31.47913 -31.33427 -28.59829 -27.66251 -25.48369 -23.33305 -23.01847 -22.53159 -22.51277 -20.14528 -19.46488 -19.15460 -18.64247 -18.30107 -17.34112 -17.11424 -16.77983 -16.48395 -16.28446 -15.99700 -15.85165 -15.35779 -15.07839 -14.97130 -14.18209 -14.10771 -14.05063 -13.95699 -13.77406 -13.59595 -13.24852 -13.17428 -13.13445 -13.04547 -12.98379 -12.91224 -12.85835 -12.59281 -12.24537 -12.06162 -11.59683 -11.52151 -11.44309 -11.23179 -10.46583 -9.83323 -9.59990 -9.53251 -9.41660 -8.90760 -6.68426 -0.55372 0.25868 0.26451 0.43954 1.01771 1.34134 1.40420 1.51913 2.04388 2.10750 2.48863 2.61250 2.83280 3.01923 3.27819 3.44202 3.49965 3.65215 4.12927 4.22433 4.24912 4.27965 4.33272 4.43807 4.47209 4.53633 4.63685 4.81908 4.82914 4.87890 4.92342 5.01183 5.11640 5.16981 5.20533 5.37959 5.45610 5.48598 5.55000 5.59692 5.72467 5.87660 5.89494 6.11090 6.44835 6.64201 6.76935 6.85331 8.04967 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.003132 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.824665 B = 8937.500989 C = 9732.659420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.033 3.967 3 Si 0.993 3.007 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.253 1.253 7 C -0.463 4.463 8 H 0.095 0.905 9 C 0.112 3.888 10 C -0.207 4.207 11 C -0.022 4.022 12 C -0.800 4.800 13 S 2.746 3.254 14 O -0.993 6.993 15 O -0.986 6.986 16 N -1.015 6.015 17 C 0.156 3.844 18 C -0.094 4.094 19 C -0.108 4.108 20 C -0.092 4.092 21 C -0.144 4.144 22 C 0.118 3.882 23 O -0.509 6.509 24 C -0.149 4.149 25 C 0.168 3.832 26 C -0.001 4.001 27 C -0.255 4.255 28 H 0.299 0.701 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.153 0.847 34 H 0.166 0.834 35 H 0.155 0.845 36 H 0.409 0.591 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.129 0.871 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.528 -12.728 13.542 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.187 4.187 3 Si 0.812 3.188 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.176 1.176 7 C -0.490 4.490 8 H 0.113 0.887 9 C 0.108 3.892 10 C -0.227 4.227 11 C -0.042 4.042 12 C -0.894 4.894 13 S 2.845 3.155 14 O -0.984 6.984 15 O -0.976 6.976 16 N -0.851 5.851 17 C 0.032 3.968 18 C -0.095 4.095 19 C -0.127 4.127 20 C -0.110 4.110 21 C -0.163 4.163 22 C 0.073 3.927 23 O -0.322 6.322 24 C -0.151 4.151 25 C 0.043 3.957 26 C -0.021 4.021 27 C -0.275 4.275 28 H 0.110 0.890 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.171 0.829 34 H 0.183 0.817 35 H 0.172 0.828 36 H 0.268 0.732 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.147 0.853 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.932 -12.562 12.959 18.472 hybrid contribution -0.055 1.298 -0.230 1.319 sum 3.877 -11.264 12.730 17.435 Atomic orbital electron populations 1.69864 1.09544 1.32001 1.30584 1.27081 0.95553 1.05404 0.90623 0.85016 0.79224 0.74711 0.79842 1.18193 1.18751 1.17622 1.20267 0.99109 0.92093 1.37529 0.88701 1.18215 0.90517 0.93440 0.87030 1.21337 1.01003 0.96992 1.03387 1.20436 0.96080 0.92028 0.95643 1.29630 1.18784 1.16293 1.24700 0.99741 0.72219 0.72882 0.70674 1.93458 1.35823 1.85071 1.84053 1.93459 1.85660 1.61273 1.57250 1.58383 1.46277 1.60822 1.19630 1.20193 0.88332 0.94189 0.94119 1.20404 0.96705 0.98113 0.94325 1.20876 0.97532 0.99035 0.95216 1.21363 0.98630 0.98153 0.92870 1.21624 0.95936 0.96880 1.01822 1.18079 0.93705 0.94130 0.86757 1.84789 1.33144 1.41908 1.72407 1.20726 0.99549 1.00825 0.93977 1.19878 0.97909 0.99129 0.78771 1.20472 0.91547 0.98170 0.91900 1.21276 1.05236 0.92763 1.08255 0.88962 0.87258 0.86989 0.88419 0.89599 0.82885 0.81656 0.82754 0.73173 0.91284 0.89464 0.85337 0.86700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.41 11.01 21.83 0.24 -39.17 16 2 C 0.03 1.55 5.13 85.26 0.44 1.98 16 3 Si 0.99 34.79 29.60 68.60 2.03 36.83 16 4 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 5 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 6 H -0.25 -8.64 7.11 99.48 0.71 -7.93 16 7 C -0.46 -23.37 9.05 23.46 0.21 -23.16 16 8 H 0.09 4.47 7.91 -2.91 -0.02 4.44 16 9 C 0.11 5.88 5.57 -21.29 -0.12 5.77 16 10 C -0.21 -10.92 8.70 22.73 0.20 -10.72 16 11 C -0.02 -1.06 9.49 22.22 0.21 -0.85 16 12 C -0.80 -36.32 6.00 22.46 0.13 -36.18 16 13 S 2.75 108.39 5.96 -56.49 -0.34 108.05 16 14 O -0.99 -43.34 16.89 -128.00 -2.16 -45.50 16 15 O -0.99 -40.92 16.88 -128.00 -2.16 -43.09 16 16 N -1.01 -32.72 3.72 -522.95 -1.94 -34.66 16 17 C 0.16 4.13 7.03 85.64 0.60 4.73 16 18 C -0.09 -2.20 6.22 -19.84 -0.12 -2.32 16 19 C -0.11 -1.83 10.04 22.31 0.22 -1.60 16 20 C -0.09 -1.27 10.04 22.23 0.22 -1.05 16 21 C -0.14 -2.33 9.99 22.35 0.22 -2.10 16 22 C 0.12 2.54 6.71 22.53 0.15 2.69 16 23 O -0.51 -10.06 13.47 -92.46 -1.25 -11.30 16 24 C -0.15 -3.79 6.18 -19.74 -0.12 -3.91 16 25 C 0.17 4.97 7.00 85.63 0.60 5.57 16 26 C 0.00 -0.05 9.49 22.22 0.21 0.16 16 27 C -0.25 -12.33 9.80 22.73 0.22 -12.11 16 28 H 0.30 13.13 8.30 -92.71 -0.77 12.36 16 29 H 0.11 5.89 6.21 -2.91 -0.02 5.87 16 30 H 0.11 5.10 7.60 -2.91 -0.02 5.08 16 31 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 34 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 36 H 0.41 4.02 9.06 -74.06 -0.67 3.35 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.13 5.04 7.60 -2.91 -0.02 5.02 16 40 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -69.44 356.73 -1.87 -71.31 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.42 Total: 30.65 kcal Atomic # 6 Polarization: -76.40 SS G_CDS: 3.29 Total: -73.11 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -1.70 Total: -73.84 kcal Atomic # 8 Polarization: -94.32 SS G_CDS: -5.57 Total: -99.89 kcal Atomic # 14 Polarization: 34.79 SS G_CDS: 2.03 Total: 36.83 kcal Atomic # 16 Polarization: 108.39 SS G_CDS: -0.34 Total: 108.05 kcal Total: -69.44 -1.87 -71.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671079567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.595 kcal (2) G-P(sol) polarization free energy of solvation -69.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds