Wall clock time and date at job start Wed Apr 1 2020 03:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46489 * 109.46513 * 2 1 4 4 C 1.36945 * 119.99951 * 59.99995 * 3 2 1 5 5 H 1.07994 * 119.99636 * 359.97438 * 4 3 2 6 6 C 1.38813 * 119.99754 * 180.02562 * 4 3 2 7 7 N 1.31617 * 120.00093 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99700 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47201 * 269.99570 * 8 6 4 10 10 H 1.48496 * 109.47037 * 29.99645 * 8 6 4 11 11 H 1.48502 * 109.46853 * 149.99646 * 8 6 4 12 12 C 1.53047 * 109.45586 * 119.97576 * 2 1 3 13 13 C 1.53163 * 109.32468 * 181.38092 * 12 2 1 14 14 N 1.46926 * 108.77299 * 305.35667 * 13 12 2 15 15 C 1.34770 * 120.63219 * 233.59070 * 14 13 12 16 16 O 1.21716 * 120.00525 * 173.22396 * 15 14 13 17 17 C 1.46544 * 119.99899 * 353.22487 * 15 14 13 18 18 C 1.37958 * 126.22514 * 155.96849 * 17 15 14 19 19 C 1.39792 * 107.13207 * 179.84943 * 18 17 15 20 20 Cl 1.73601 * 126.06148 * 180.16180 * 19 18 17 21 21 C 1.35720 * 107.87271 * 0.41718 * 19 18 17 22 22 Cl 1.73597 * 125.58540 * 179.71678 * 21 19 18 23 23 N 1.35664 * 108.82879 * 359.74513 * 21 19 18 24 24 H 0.97001 * 125.69206 * 179.97438 * 23 21 19 25 25 C 1.46931 * 118.73765 * 53.60104 * 14 13 12 26 26 C 1.53041 * 109.45667 * 240.02562 * 2 1 3 27 27 H 1.09001 * 109.46892 * 59.99604 * 1 2 3 28 28 H 1.08993 * 109.47494 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46970 * 300.00594 * 1 2 3 30 30 H 0.96998 * 120.00218 * 240.00063 * 3 2 1 31 31 H 0.96994 * 120.00314 * 0.02562 * 7 6 4 32 32 H 1.08997 * 109.49382 * 301.31853 * 12 2 1 33 33 H 1.08996 * 109.50030 * 61.41692 * 12 2 1 34 34 H 1.08998 * 109.59124 * 185.56476 * 13 12 2 35 35 H 1.09002 * 109.59197 * 65.13936 * 13 12 2 36 36 H 1.08001 * 126.43244 * 359.96952 * 18 17 15 37 37 H 1.09002 * 109.58378 * 186.60650 * 25 14 13 38 38 H 1.09003 * 109.58232 * 66.18621 * 25 14 13 39 39 H 1.09004 * 109.49822 * 298.58008 * 26 2 1 40 40 H 1.08996 * 109.50286 * 58.64991 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 1.6873 2.2243 1.0271 5 1 1.0661 1.8711 1.8368 6 6 2.1494 3.5333 1.0268 7 7 2.9061 3.9638 0.0396 8 14 1.6974 4.6836 2.4274 9 1 0.4345 5.3920 2.0983 10 1 1.5137 3.8976 3.6738 11 1 2.7848 5.6758 2.6236 12 6 2.0398 -0.7210 1.2500 13 6 3.5710 -0.6892 1.2645 14 7 4.0676 -1.2495 0.0004 15 6 4.9615 -2.2581 0.0005 16 8 5.2722 -2.7962 -1.0462 17 6 5.5595 -2.7070 1.2608 18 6 6.0944 -3.9539 1.5108 19 6 6.5535 -3.9478 2.8312 20 17 7.3199 -5.2712 3.6528 21 6 6.2886 -2.7256 3.3586 22 17 6.6612 -2.2217 4.9775 23 7 5.6843 -1.9625 2.4136 24 1 5.3892 -1.0459 2.5301 25 6 3.5713 -0.6892 -1.2640 26 6 2.0398 -0.7209 -1.2500 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.5758 1.6985 -0.7275 31 1 3.1405 3.3666 -0.6878 32 1 1.6574 -0.2209 2.1398 33 1 1.6975 -1.7558 1.2383 34 1 3.9411 -1.2851 2.0988 35 1 3.9143 0.3403 1.3676 36 1 6.1499 -4.7791 0.8162 37 1 3.9416 -1.2853 -2.0981 38 1 3.9145 0.3402 -1.3671 39 1 1.6975 -1.7558 -1.2382 40 1 1.6570 -0.2213 -2.1398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700284633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:11 Heat of formation + Delta-G solvation = 25.745284 kcal Electronic energy + Delta-G solvation = -26391.742765 eV Core-core repulsion = 22487.933989 eV Total energy + Delta-G solvation = -3903.808776 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.92935 -39.78244 -37.96855 -37.06442 -36.69190 -34.90578 -32.81198 -31.71426 -30.95429 -29.54108 -28.77622 -27.77838 -24.26344 -23.61908 -23.26489 -21.79878 -21.19139 -20.58884 -19.14092 -17.84672 -17.12796 -16.81758 -15.90461 -15.80454 -15.26295 -14.91970 -14.57814 -14.29252 -14.16312 -13.80908 -13.70486 -13.64910 -13.46673 -13.14151 -12.72432 -12.46927 -12.16592 -11.96672 -11.72051 -11.66726 -11.53797 -11.43656 -11.14701 -10.99356 -10.89172 -10.68777 -10.44061 -10.11095 -10.10159 -9.94578 -9.27853 -9.21681 -9.06880 -8.65007 -8.39416 -7.16700 -6.20625 -3.22560 1.01396 1.21033 1.86056 1.97776 2.79574 2.95871 3.26893 3.42349 3.45775 3.59653 4.33810 4.54526 4.61845 4.80959 5.06121 5.12231 5.17571 5.31134 5.36731 5.38779 5.53323 5.55503 5.74087 5.80044 5.89471 5.93578 6.01312 6.14031 6.18367 6.21327 6.27769 6.35470 6.48695 6.60739 6.66938 6.77923 6.88514 7.37947 7.70185 8.03145 8.63582 9.09083 9.95855 10.11353 11.26773 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.003532 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.331784 B = 7926.035778 C = 9386.711082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.203 3.797 3 N -0.729 5.729 4 C -0.327 4.327 5 H 0.065 0.935 6 C -0.042 4.042 7 N -0.942 5.942 8 Si 1.076 2.924 9 H -0.296 1.296 10 H -0.295 1.295 11 H -0.289 1.289 12 C -0.131 4.131 13 C 0.097 3.903 14 N -0.595 5.595 15 C 0.587 3.413 16 O -0.530 6.530 17 C -0.005 4.005 18 C -0.095 4.095 19 C -0.098 4.098 20 Cl -0.032 7.032 21 C 0.092 3.908 22 Cl 0.003 6.997 23 N -0.520 5.520 24 H 0.435 0.565 25 C 0.118 3.882 26 C -0.132 4.132 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.367 0.633 31 H 0.255 0.745 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.166 0.834 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.749 -15.180 5.863 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.112 3.888 3 N -0.372 5.372 4 C -0.458 4.458 5 H 0.083 0.917 6 C -0.240 4.240 7 N -0.588 5.588 8 Si 0.908 3.092 9 H -0.224 1.224 10 H -0.222 1.222 11 H -0.215 1.215 12 C -0.171 4.171 13 C -0.025 4.025 14 N -0.328 5.328 15 C 0.374 3.626 16 O -0.407 6.407 17 C -0.119 4.119 18 C -0.121 4.121 19 C -0.133 4.133 20 Cl -0.003 7.003 21 C -0.052 4.052 22 Cl 0.032 6.968 23 N -0.126 5.126 24 H 0.281 0.719 25 C -0.004 4.004 26 C -0.170 4.170 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.201 0.799 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.183 0.817 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.990 -13.827 6.277 15.984 hybrid contribution -0.245 -0.908 -0.227 0.967 sum 4.746 -14.735 6.050 16.621 Atomic orbital electron populations 1.22188 0.97250 0.99139 1.02253 1.19457 0.92366 0.85687 0.91316 1.42537 1.61207 1.06671 1.26833 1.19938 1.29845 0.94488 1.01514 0.91667 1.25653 0.98975 0.95905 1.03460 1.70865 1.38736 1.37999 1.11168 0.83271 0.75990 0.75756 0.74204 1.22359 1.22208 1.21492 1.22255 0.93535 0.99575 1.01772 1.22145 0.96805 0.99770 0.83814 1.48044 1.41906 1.34106 1.08695 1.16884 0.79396 0.79841 0.86466 1.90844 1.62959 1.55819 1.31102 1.20447 1.10853 0.93247 0.87349 1.21075 1.00307 0.96571 0.94196 1.19573 1.09753 0.89558 0.94389 1.98342 1.79613 1.44464 1.77906 1.20669 1.06518 0.91758 0.86277 1.98429 1.92620 1.91259 1.14505 1.42847 1.45688 1.14995 1.09110 0.71872 1.21634 0.94424 0.99161 0.85132 1.22122 0.94642 1.00832 0.99418 0.93132 0.94429 0.92415 0.79910 0.93373 0.90310 0.92913 0.91360 0.88878 0.81657 0.89256 0.90610 0.91489 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.44 37.16 0.31 -2.18 16 2 C 0.20 3.46 0.74 -131.78 -0.10 3.36 16 3 N -0.73 -15.43 4.13 -47.19 -0.19 -15.62 16 4 C -0.33 -7.95 8.68 -15.06 -0.13 -8.08 16 5 H 0.07 1.58 6.70 -52.49 -0.35 1.23 16 6 C -0.04 -1.10 5.50 -17.43 -0.10 -1.20 16 7 N -0.94 -26.90 13.70 55.49 0.76 -26.14 16 8 Si 1.08 24.17 29.92 -169.99 -5.09 19.08 16 9 H -0.30 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.30 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 C -0.13 -2.04 4.70 -26.62 -0.13 -2.16 16 13 C 0.10 1.41 5.06 -3.73 -0.02 1.40 16 14 N -0.60 -8.86 2.97 -174.37 -0.52 -9.37 16 15 C 0.59 8.95 7.62 -12.92 -0.10 8.85 16 16 O -0.53 -9.38 16.39 5.17 0.08 -9.30 16 17 C 0.00 -0.06 6.38 -81.94 -0.52 -0.59 16 18 C -0.10 -1.16 10.72 -39.10 -0.42 -1.58 16 19 C -0.10 -1.14 6.66 -39.90 -0.27 -1.40 16 20 Cl -0.03 -0.33 29.12 -51.86 -1.51 -1.84 16 21 C 0.09 1.05 7.75 -16.76 -0.13 0.92 16 22 Cl 0.00 0.03 29.13 -51.86 -1.51 -1.48 16 23 N -0.52 -6.05 4.76 -6.51 -0.03 -6.08 16 24 H 0.44 4.70 6.39 -40.82 -0.26 4.44 16 25 C 0.12 1.80 6.17 -3.71 -0.02 1.78 16 26 C -0.13 -1.96 4.96 -26.61 -0.13 -2.09 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.04 7.27 -51.93 -0.38 0.67 16 30 H 0.37 8.24 5.29 -40.82 -0.22 8.02 16 31 H 0.25 7.15 6.77 -40.82 -0.28 6.87 16 32 H 0.08 1.31 7.31 -51.93 -0.38 0.93 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.85 4.20 -51.93 -0.22 0.63 16 35 H 0.09 1.58 7.74 -51.93 -0.40 1.18 16 36 H 0.17 1.84 8.06 -52.49 -0.42 1.41 16 37 H 0.09 1.34 7.00 -51.93 -0.36 0.97 16 38 H 0.08 1.25 6.94 -51.93 -0.36 0.89 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 349.20 15.07 5.26 5.26 Total: -1.00 -28.38 349.20 -9.03 -37.41 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -4.54 Total: 11.06 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -1.75 Total: -2.98 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.02 Total: -57.22 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.08 Total: -9.30 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.09 Total: 19.08 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -3.02 Total: -3.32 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.38 -9.03 -37.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700284633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.155 kcal (2) G-P(sol) polarization free energy of solvation -28.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds