Wall clock time and date at job start Wed Apr 1 2020 03:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46489 * 109.46513 * 2 1 4 4 C 1.36945 * 119.99951 * 59.99995 * 3 2 1 5 5 H 1.07994 * 119.99636 * 359.97438 * 4 3 2 6 6 C 1.38813 * 119.99754 * 180.02562 * 4 3 2 7 7 N 1.31617 * 120.00093 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99700 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47201 * 269.99570 * 8 6 4 10 10 H 1.48496 * 109.47037 * 29.99645 * 8 6 4 11 11 H 1.48502 * 109.46853 * 149.99646 * 8 6 4 12 12 C 1.53047 * 109.45586 * 119.97576 * 2 1 3 13 13 C 1.53163 * 109.32468 * 181.38092 * 12 2 1 14 14 N 1.46926 * 108.77299 * 305.35667 * 13 12 2 15 15 C 1.34770 * 120.63219 * 233.59070 * 14 13 12 16 16 O 1.21716 * 120.00525 * 173.22396 * 15 14 13 17 17 C 1.46544 * 119.99899 * 353.22487 * 15 14 13 18 18 C 1.37958 * 126.22514 * 155.96849 * 17 15 14 19 19 C 1.39792 * 107.13207 * 179.84943 * 18 17 15 20 20 Cl 1.73601 * 126.06148 * 180.16180 * 19 18 17 21 21 C 1.35720 * 107.87271 * 0.41718 * 19 18 17 22 22 Cl 1.73597 * 125.58540 * 179.71678 * 21 19 18 23 23 N 1.35664 * 108.82879 * 359.74513 * 21 19 18 24 24 H 0.97001 * 125.69206 * 179.97438 * 23 21 19 25 25 C 1.46931 * 118.73765 * 53.60104 * 14 13 12 26 26 C 1.53041 * 109.45667 * 240.02562 * 2 1 3 27 27 H 1.09001 * 109.46892 * 59.99604 * 1 2 3 28 28 H 1.08993 * 109.47494 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46970 * 300.00594 * 1 2 3 30 30 H 0.96998 * 120.00218 * 240.00063 * 3 2 1 31 31 H 0.96994 * 120.00314 * 0.02562 * 7 6 4 32 32 H 1.08997 * 109.49382 * 301.31853 * 12 2 1 33 33 H 1.08996 * 109.50030 * 61.41692 * 12 2 1 34 34 H 1.08998 * 109.59124 * 185.56476 * 13 12 2 35 35 H 1.09002 * 109.59197 * 65.13936 * 13 12 2 36 36 H 1.08001 * 126.43244 * 359.96952 * 18 17 15 37 37 H 1.09002 * 109.58378 * 186.60650 * 25 14 13 38 38 H 1.09003 * 109.58232 * 66.18621 * 25 14 13 39 39 H 1.09004 * 109.49822 * 298.58008 * 26 2 1 40 40 H 1.08996 * 109.50286 * 58.64991 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 1.6873 2.2243 1.0271 5 1 1.0661 1.8711 1.8368 6 6 2.1494 3.5333 1.0268 7 7 2.9061 3.9638 0.0396 8 14 1.6974 4.6836 2.4274 9 1 0.4345 5.3920 2.0983 10 1 1.5137 3.8976 3.6738 11 1 2.7848 5.6758 2.6236 12 6 2.0398 -0.7210 1.2500 13 6 3.5710 -0.6892 1.2645 14 7 4.0676 -1.2495 0.0004 15 6 4.9615 -2.2581 0.0005 16 8 5.2722 -2.7962 -1.0462 17 6 5.5595 -2.7070 1.2608 18 6 6.0944 -3.9539 1.5108 19 6 6.5535 -3.9478 2.8312 20 17 7.3199 -5.2712 3.6528 21 6 6.2886 -2.7256 3.3586 22 17 6.6612 -2.2217 4.9775 23 7 5.6843 -1.9625 2.4136 24 1 5.3892 -1.0459 2.5301 25 6 3.5713 -0.6892 -1.2640 26 6 2.0398 -0.7209 -1.2500 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.5758 1.6985 -0.7275 31 1 3.1405 3.3666 -0.6878 32 1 1.6574 -0.2209 2.1398 33 1 1.6975 -1.7558 1.2383 34 1 3.9411 -1.2851 2.0988 35 1 3.9143 0.3403 1.3676 36 1 6.1499 -4.7791 0.8162 37 1 3.9416 -1.2853 -2.0981 38 1 3.9145 0.3402 -1.3671 39 1 1.6975 -1.7558 -1.2382 40 1 1.6570 -0.2213 -2.1398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700284633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:11 Heat of formation + Delta-G solvation = 10.197709 kcal Electronic energy + Delta-G solvation = -26392.416958 eV Core-core repulsion = 22487.933989 eV Total energy + Delta-G solvation = -3904.482970 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.93337 -41.00155 -39.30508 -37.94230 -37.55753 -36.36405 -34.49510 -32.83138 -32.06022 -30.81278 -30.30028 -29.04767 -25.85274 -25.03517 -24.57070 -22.96136 -22.19771 -21.60628 -20.50063 -19.24660 -18.75156 -17.95170 -17.06705 -16.99143 -16.70736 -15.95524 -15.85222 -15.70012 -15.37811 -15.23503 -15.10892 -14.76159 -14.52489 -14.34458 -14.19373 -13.69078 -13.28364 -13.02566 -12.92464 -12.85117 -12.77891 -12.63992 -12.51770 -12.28584 -12.24460 -12.00029 -11.91219 -11.80326 -11.52001 -11.27555 -10.97180 -10.86255 -10.21521 -9.87315 -9.41374 -9.00465 -8.24907 -5.19819 -0.00247 0.29769 0.96061 1.03159 1.61196 1.67478 1.69028 1.82275 1.86858 2.20861 2.75072 3.23887 3.49412 3.64222 3.67170 3.70062 3.85323 4.03848 4.07859 4.17516 4.25621 4.42801 4.45613 4.50352 4.64685 4.73264 4.87781 4.92133 4.96219 5.00361 5.03621 5.14298 5.21321 5.25772 5.45212 5.52169 5.72656 5.76080 6.18214 6.61534 6.83055 7.19670 8.10854 8.23314 9.26482 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.003532 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.331784 B = 7926.035778 C = 9386.711082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.194 3.806 3 N -0.735 5.735 4 C -0.300 4.300 5 H 0.069 0.931 6 C -0.103 4.103 7 N -0.983 5.983 8 Si 1.116 2.884 9 H -0.295 1.295 10 H -0.271 1.271 11 H -0.302 1.302 12 C -0.127 4.127 13 C 0.106 3.894 14 N -0.594 5.594 15 C 0.590 3.410 16 O -0.558 6.558 17 C -0.022 4.022 18 C -0.088 4.088 19 C -0.104 4.104 20 Cl -0.020 7.020 21 C 0.098 3.902 22 Cl 0.017 6.983 23 N -0.517 5.517 24 H 0.438 0.562 25 C 0.121 3.879 26 C -0.122 4.122 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.358 0.642 31 H 0.244 0.756 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.175 0.825 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.364 -17.065 7.281 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.104 3.896 3 N -0.378 5.378 4 C -0.431 4.431 5 H 0.087 0.913 6 C -0.295 4.295 7 N -0.632 5.632 8 Si 0.944 3.056 9 H -0.223 1.223 10 H -0.196 1.196 11 H -0.229 1.229 12 C -0.167 4.167 13 C -0.017 4.017 14 N -0.326 5.326 15 C 0.379 3.621 16 O -0.437 6.437 17 C -0.136 4.136 18 C -0.114 4.114 19 C -0.139 4.139 20 Cl 0.008 6.992 21 C -0.047 4.047 22 Cl 0.046 6.954 23 N -0.123 5.123 24 H 0.284 0.716 25 C -0.001 4.001 26 C -0.161 4.161 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.191 0.809 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.192 0.808 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.572 -15.761 7.719 18.136 hybrid contribution -0.114 -0.452 -0.627 0.781 sum 4.458 -16.213 7.092 18.249 Atomic orbital electron populations 1.22118 0.96565 1.00704 1.00898 1.19761 0.92749 0.83865 0.93220 1.42693 1.61085 1.08182 1.25827 1.20166 1.27200 0.94342 1.01437 0.91324 1.26700 0.99804 0.98072 1.04882 1.70962 1.41659 1.38281 1.12331 0.82730 0.75139 0.74433 0.73307 1.22273 1.19602 1.22925 1.22183 0.93931 1.00374 1.00187 1.22025 0.96305 0.98798 0.84533 1.48032 1.41941 1.34040 1.08556 1.17069 0.78891 0.79336 0.86844 1.90825 1.63776 1.56777 1.32299 1.20141 1.12386 0.93928 0.87152 1.21256 0.99184 0.96405 0.94551 1.19636 1.09913 0.90037 0.94331 1.98349 1.79366 1.43863 1.77596 1.20809 1.05558 0.91623 0.86669 1.98441 1.92444 1.91142 1.13409 1.42765 1.45721 1.15054 1.08802 0.71577 1.21541 0.94761 0.98201 0.85641 1.22045 0.94132 1.01496 0.98383 0.94148 0.91417 0.94066 0.80886 0.94543 0.91292 0.90731 0.88960 0.91515 0.80761 0.88914 0.92472 0.89620 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 8.44 71.98 0.61 -3.93 16 2 C 0.19 6.34 0.74 3.64 0.00 6.34 16 3 N -0.74 -31.16 4.13 -303.22 -1.25 -32.41 16 4 C -0.30 -14.51 8.68 84.03 0.73 -13.78 16 5 H 0.07 3.25 6.70 -2.91 -0.02 3.24 16 6 C -0.10 -5.46 5.50 84.86 0.47 -5.00 16 7 N -0.98 -57.53 13.70 21.65 0.30 -57.24 16 8 Si 1.12 48.89 29.92 68.60 2.05 50.94 16 9 H -0.30 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 11 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 12 C -0.13 -3.68 4.70 30.66 0.14 -3.54 16 13 C 0.11 2.96 5.06 86.35 0.44 3.39 16 14 N -0.59 -17.12 2.97 -823.80 -2.45 -19.57 16 15 C 0.59 17.35 7.62 86.41 0.66 18.01 16 16 O -0.56 -19.29 16.39 -4.40 -0.07 -19.36 16 17 C -0.02 -0.56 6.38 40.31 0.26 -0.30 16 18 C -0.09 -1.97 10.72 22.58 0.24 -1.73 16 19 C -0.10 -2.21 6.66 22.06 0.15 -2.06 16 20 Cl -0.02 -0.38 29.12 -2.72 -0.08 -0.46 16 21 C 0.10 2.04 7.75 83.52 0.65 2.69 16 22 Cl 0.02 0.31 29.13 -2.72 -0.08 0.23 16 23 N -0.52 -11.15 4.76 -174.52 -0.83 -11.98 16 24 H 0.44 8.84 6.39 -92.71 -0.59 8.24 16 25 C 0.12 3.62 6.17 86.36 0.53 4.15 16 26 C -0.12 -3.46 4.96 30.67 0.15 -3.31 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 29 H 0.04 1.42 7.27 -2.39 -0.02 1.40 16 30 H 0.36 16.48 5.29 -92.71 -0.49 15.99 16 31 H 0.24 14.19 6.77 -92.71 -0.63 13.56 16 32 H 0.07 2.16 7.31 -2.39 -0.02 2.15 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.09 2.13 4.20 -2.39 -0.01 2.12 16 35 H 0.07 2.25 7.74 -2.39 -0.02 2.23 16 36 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 37 H 0.09 2.73 7.00 -2.39 -0.02 2.72 16 38 H 0.06 1.93 6.94 -2.39 -0.02 1.92 16 39 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 40 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -60.48 349.20 2.78 -57.70 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: 0.17 Total: 31.22 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 5.02 Total: 0.93 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -4.24 Total: -121.20 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.07 Total: -19.36 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.05 Total: 50.94 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -0.16 Total: -0.23 kcal Total: -60.48 2.78 -57.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700284633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.896 kcal (2) G-P(sol) polarization free energy of solvation -60.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds