Wall clock time and date at job start Wed Apr 1 2020 02:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00118 * 2 1 4 4 C 1.52999 * 109.47170 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46985 * 64.99940 * 4 3 2 6 6 C 1.46500 * 119.99891 * 269.99858 * 5 4 3 7 7 C 1.50695 * 109.47103 * 269.99789 * 6 5 4 8 8 H 1.07993 * 120.00280 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00123 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99639 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00360 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46744 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47147 * 120.00056 * 11 9 7 14 14 H 1.48499 * 109.47077 * 240.00507 * 11 9 7 15 15 C 1.34778 * 120.00156 * 90.00173 * 5 4 3 16 16 O 1.21285 * 119.99909 * 359.97438 * 15 5 4 17 17 C 1.50706 * 120.00079 * 179.97438 * 15 5 4 18 18 O 1.42901 * 109.47145 * 179.97438 * 17 15 5 19 19 C 1.35937 * 117.00075 * 179.97438 * 18 17 15 20 20 C 1.38729 * 120.02341 * 0.25610 * 19 18 17 21 21 C 1.38150 * 119.99246 * 180.23583 * 20 19 18 22 22 C 1.38445 * 120.04234 * 359.48625 * 21 20 19 23 23 F 1.35091 * 119.97710 * 180.25999 * 22 21 20 24 24 C 1.38553 * 120.04706 * 0.28136 * 22 21 20 25 25 Cl 1.73599 * 119.99437 * 179.97438 * 24 22 21 26 26 C 1.38274 * 120.00637 * 359.97438 * 24 22 21 27 27 H 1.09005 * 109.47146 * 60.00236 * 1 2 3 28 28 H 1.08997 * 109.47307 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46996 * 300.00125 * 1 2 3 30 30 H 1.08998 * 109.47297 * 59.99341 * 3 2 1 31 31 H 1.09010 * 109.47092 * 299.99976 * 3 2 1 32 32 H 1.08996 * 109.47411 * 305.00172 * 4 3 2 33 33 H 1.09004 * 109.46820 * 184.99674 * 4 3 2 34 34 H 1.08998 * 109.47394 * 30.00408 * 6 5 4 35 35 H 1.09004 * 109.47218 * 150.00311 * 6 5 4 36 36 H 0.97008 * 119.99643 * 179.97438 * 10 9 7 37 37 H 1.09003 * 109.46816 * 59.99726 * 17 15 5 38 38 H 1.09001 * 109.46955 * 300.00021 * 17 15 5 39 39 H 1.08002 * 120.00804 * 359.97438 * 20 19 18 40 40 H 1.08002 * 119.98274 * 179.77148 * 21 20 19 41 41 H 1.08000 * 120.01560 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8927 -1.3402 7 6 5.5017 -1.2982 -0.9412 8 1 6.2200 -0.5464 -0.6498 9 6 5.8610 -2.6293 -0.9472 10 7 4.9861 -3.5450 -1.3016 11 14 7.5906 -3.1322 -0.4519 12 1 8.3758 -1.9222 -0.0987 13 1 7.5253 -4.0395 0.7220 14 1 8.2454 -3.8346 -1.5846 15 6 4.2634 1.3328 -2.3200 16 8 4.1557 2.5386 -2.2462 17 6 4.7178 0.6943 -3.6073 18 8 4.9573 1.7095 -4.5840 19 6 5.3768 1.2995 -5.8103 20 6 5.5489 -0.0526 -6.0688 21 6 5.9800 -0.4683 -7.3137 22 6 6.2302 0.4629 -8.3072 23 9 6.6466 0.0546 -9.5257 24 6 6.0543 1.8134 -8.0524 25 17 6.3691 2.9800 -9.2988 26 6 5.6280 2.2321 -6.8054 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8901 32 1 3.8508 0.5684 0.8426 33 1 3.9785 2.1765 0.0902 34 1 3.3858 -1.3633 -0.6713 35 1 3.9139 -1.2124 -2.3644 36 1 5.2390 -4.4815 -1.3061 37 1 3.9444 0.0170 -3.9697 38 1 5.6367 0.1352 -3.4309 39 1 5.3500 -0.7800 -5.2956 40 1 6.1174 -1.5207 -7.5137 41 1 5.4912 3.2847 -6.6065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103214959.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:38 Heat of formation + Delta-G solvation = -139.890864 kcal Electronic energy + Delta-G solvation = -27699.242229 eV Core-core repulsion = 23327.621804 eV Total energy + Delta-G solvation = -4371.620425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.94992 -40.33919 -39.17536 -37.67463 -37.22858 -36.38969 -35.03771 -32.74512 -31.37182 -30.53026 -29.57989 -27.72331 -27.09844 -25.85137 -23.49981 -23.01916 -22.81082 -21.94909 -18.79194 -18.54942 -17.46390 -17.07440 -16.75624 -16.48143 -16.11370 -15.96002 -15.70283 -15.61522 -15.17174 -15.00422 -14.72263 -14.47116 -14.05522 -13.99798 -13.75500 -13.41309 -12.98657 -12.90554 -12.48078 -12.38061 -12.09123 -11.95605 -11.63777 -11.59418 -11.54463 -11.36629 -11.08249 -10.99730 -10.97243 -10.71818 -10.63563 -10.24352 -9.82378 -9.47783 -9.19625 -9.16032 -8.63344 -8.22013 -7.87811 -6.26342 -4.34897 0.80964 1.00811 1.74945 2.88628 3.12402 3.16059 3.25967 3.30017 3.31209 3.97345 4.02635 4.09230 4.27554 4.48730 4.79565 4.97941 5.05668 5.06862 5.15337 5.31359 5.36818 5.44023 5.52491 5.57165 5.58942 5.60428 5.65153 5.76644 5.80309 5.93285 5.97737 6.07042 6.26985 6.35216 6.65503 7.08397 7.27828 7.39579 7.45884 7.69234 7.96090 8.15814 8.65869 8.82058 9.33651 10.79909 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009525 B = 0.003175 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.951740 B = 8818.130691 C =10743.573474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.047 3.953 4 C 0.124 3.876 5 N -0.582 5.582 6 C 0.235 3.765 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.068 3.932 10 N -0.887 5.887 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.520 3.480 16 O -0.557 6.557 17 C 0.043 3.957 18 O -0.286 6.286 19 C 0.145 3.855 20 C -0.175 4.175 21 C -0.096 4.096 22 C 0.062 3.938 23 F -0.132 7.132 24 C -0.035 4.035 25 Cl -0.049 7.049 26 C -0.121 4.121 27 H 0.035 0.965 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.032 0.968 36 H 0.265 0.735 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 6.596 -7.669 10.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.031 4.031 4 C 0.001 3.999 5 N -0.313 5.313 6 C 0.116 3.884 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.136 4.136 10 N -0.524 5.524 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.208 1.208 15 C 0.306 3.694 16 O -0.437 6.437 17 C -0.035 4.035 18 O -0.198 6.198 19 C 0.098 3.902 20 C -0.194 4.194 21 C -0.115 4.115 22 C 0.041 3.959 23 F -0.110 7.110 24 C -0.063 4.063 25 Cl -0.020 7.020 26 C -0.141 4.141 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.128 0.872 39 H 0.171 0.829 40 H 0.167 0.833 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.146 7.117 -7.713 10.956 hybrid contribution 0.802 -0.590 0.027 0.996 sum -2.344 6.527 -7.685 10.352 Atomic orbital electron populations 1.22687 0.82060 1.02443 0.99232 1.88048 1.18752 1.27396 1.95225 1.23026 0.95125 0.84994 0.99953 1.21371 0.91158 0.99741 0.87658 1.48054 1.63478 1.09993 1.09799 1.19568 0.97735 0.72474 0.98623 1.21568 0.97247 0.92573 1.47061 0.91969 1.24925 0.97560 0.96306 0.94779 1.69941 1.34276 1.01249 1.46976 0.86505 0.84161 0.78773 0.78463 1.19622 1.20758 1.20773 1.19738 0.77977 0.86783 0.84853 1.90645 1.54607 1.14287 1.84149 1.22727 1.03936 0.89721 0.87090 1.86130 1.80334 1.35167 1.18178 1.18838 0.93815 0.91953 0.85587 1.21483 1.04029 0.95294 0.98559 1.20942 0.98895 0.99975 0.91676 1.17231 1.05498 0.90773 0.82356 1.91509 1.87992 1.90804 1.40739 1.20548 1.05378 0.88796 0.91547 1.98382 1.94048 1.57826 1.51708 1.20067 1.03733 1.00854 0.89412 0.94614 0.89824 0.94666 0.93023 0.93305 0.89095 0.89252 0.92673 0.95029 0.92492 0.88861 0.87217 0.82892 0.83328 0.83084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.30 9.53 -35.23 -0.34 -6.63 16 3 C 0.05 0.72 6.28 37.16 0.23 0.95 16 4 C 0.12 2.14 5.81 -4.04 -0.02 2.12 16 5 N -0.58 -11.48 2.42 -175.06 -0.42 -11.91 16 6 C 0.24 5.22 4.78 -5.20 -0.02 5.20 16 7 C -0.55 -13.29 9.28 -34.44 -0.32 -13.61 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -23.15 13.29 55.43 0.74 -22.42 16 11 Si 0.89 19.60 29.54 -169.99 -5.02 14.58 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 15 C 0.52 10.28 7.75 -10.98 -0.09 10.20 16 16 O -0.56 -12.12 16.08 -14.35 -0.23 -12.35 16 17 C 0.04 0.73 3.77 36.01 0.14 0.87 16 18 O -0.29 -4.84 9.67 -39.45 -0.38 -5.22 16 19 C 0.15 2.09 6.68 -39.24 -0.26 1.83 16 20 C -0.17 -2.29 9.04 -39.43 -0.36 -2.64 16 21 C -0.10 -1.15 10.02 -39.54 -0.40 -1.54 16 22 C 0.06 0.79 7.27 -39.39 -0.29 0.50 16 23 F -0.13 -1.72 16.83 2.25 0.04 -1.68 16 24 C -0.03 -0.44 6.32 -39.45 -0.25 -0.69 16 25 Cl -0.05 -0.57 28.61 -51.86 -1.48 -2.05 16 26 C -0.12 -1.59 9.77 -39.41 -0.38 -1.98 16 27 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 32 H 0.09 1.58 8.07 -51.93 -0.42 1.16 16 33 H 0.09 1.48 7.42 -51.93 -0.39 1.09 16 34 H 0.06 1.34 7.11 -51.93 -0.37 0.97 16 35 H 0.03 0.71 6.44 -51.93 -0.33 0.37 16 36 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 37 H 0.09 1.46 6.91 -51.93 -0.36 1.10 16 38 H 0.11 1.89 7.53 -51.93 -0.39 1.50 16 39 H 0.15 1.94 6.30 -52.49 -0.33 1.61 16 40 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -28.55 373.27 -7.57 -36.12 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.09 Total: 1.60 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.00 Total: 4.32 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.31 Total: -34.32 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.95 Total: -24.20 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.55 -7.57 -36.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214959.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.769 kcal (2) G-P(sol) polarization free energy of solvation -28.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds