Wall clock time and date at job start Wed Apr 1 2020 02:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00118 * 2 1 4 4 C 1.52999 * 109.47170 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46985 * 64.99940 * 4 3 2 6 6 C 1.46500 * 119.99891 * 269.99858 * 5 4 3 7 7 C 1.50695 * 109.47103 * 269.99789 * 6 5 4 8 8 H 1.07993 * 120.00280 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00123 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99639 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00360 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46744 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47147 * 120.00056 * 11 9 7 14 14 H 1.48499 * 109.47077 * 240.00507 * 11 9 7 15 15 C 1.34778 * 120.00156 * 90.00173 * 5 4 3 16 16 O 1.21285 * 119.99909 * 359.97438 * 15 5 4 17 17 C 1.50706 * 120.00079 * 179.97438 * 15 5 4 18 18 O 1.42901 * 109.47145 * 179.97438 * 17 15 5 19 19 C 1.35937 * 117.00075 * 179.97438 * 18 17 15 20 20 C 1.38729 * 120.02341 * 0.25610 * 19 18 17 21 21 C 1.38150 * 119.99246 * 180.23583 * 20 19 18 22 22 C 1.38445 * 120.04234 * 359.48625 * 21 20 19 23 23 F 1.35091 * 119.97710 * 180.25999 * 22 21 20 24 24 C 1.38553 * 120.04706 * 0.28136 * 22 21 20 25 25 Cl 1.73599 * 119.99437 * 179.97438 * 24 22 21 26 26 C 1.38274 * 120.00637 * 359.97438 * 24 22 21 27 27 H 1.09005 * 109.47146 * 60.00236 * 1 2 3 28 28 H 1.08997 * 109.47307 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46996 * 300.00125 * 1 2 3 30 30 H 1.08998 * 109.47297 * 59.99341 * 3 2 1 31 31 H 1.09010 * 109.47092 * 299.99976 * 3 2 1 32 32 H 1.08996 * 109.47411 * 305.00172 * 4 3 2 33 33 H 1.09004 * 109.46820 * 184.99674 * 4 3 2 34 34 H 1.08998 * 109.47394 * 30.00408 * 6 5 4 35 35 H 1.09004 * 109.47218 * 150.00311 * 6 5 4 36 36 H 0.97008 * 119.99643 * 179.97438 * 10 9 7 37 37 H 1.09003 * 109.46816 * 59.99726 * 17 15 5 38 38 H 1.09001 * 109.46955 * 300.00021 * 17 15 5 39 39 H 1.08002 * 120.00804 * 359.97438 * 20 19 18 40 40 H 1.08002 * 119.98274 * 179.77148 * 21 20 19 41 41 H 1.08000 * 120.01560 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8927 -1.3402 7 6 5.5017 -1.2982 -0.9412 8 1 6.2200 -0.5464 -0.6498 9 6 5.8610 -2.6293 -0.9472 10 7 4.9861 -3.5450 -1.3016 11 14 7.5906 -3.1322 -0.4519 12 1 8.3758 -1.9222 -0.0987 13 1 7.5253 -4.0395 0.7220 14 1 8.2454 -3.8346 -1.5846 15 6 4.2634 1.3328 -2.3200 16 8 4.1557 2.5386 -2.2462 17 6 4.7178 0.6943 -3.6073 18 8 4.9573 1.7095 -4.5840 19 6 5.3768 1.2995 -5.8103 20 6 5.5489 -0.0526 -6.0688 21 6 5.9800 -0.4683 -7.3137 22 6 6.2302 0.4629 -8.3072 23 9 6.6466 0.0546 -9.5257 24 6 6.0543 1.8134 -8.0524 25 17 6.3691 2.9800 -9.2988 26 6 5.6280 2.2321 -6.8054 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8901 32 1 3.8508 0.5684 0.8426 33 1 3.9785 2.1765 0.0902 34 1 3.3858 -1.3633 -0.6713 35 1 3.9139 -1.2124 -2.3644 36 1 5.2390 -4.4815 -1.3061 37 1 3.9444 0.0170 -3.9697 38 1 5.6367 0.1352 -3.4309 39 1 5.3500 -0.7800 -5.2956 40 1 6.1174 -1.5207 -7.5137 41 1 5.4912 3.2847 -6.6065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103214959.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:37 Heat of formation + Delta-G solvation = -154.022495 kcal Electronic energy + Delta-G solvation = -27699.855022 eV Core-core repulsion = 23327.621804 eV Total energy + Delta-G solvation = -4372.233218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.97323 -41.58162 -40.57627 -38.84472 -38.41110 -37.42102 -36.67175 -34.57893 -32.46050 -31.83765 -30.72259 -29.23781 -28.58261 -27.00855 -24.88730 -24.52295 -23.98504 -23.12665 -20.27057 -19.68975 -18.69490 -18.55993 -18.22086 -17.74090 -17.48018 -17.25743 -16.98167 -16.75968 -16.46964 -16.27528 -16.07222 -15.90904 -15.31201 -15.05231 -14.99372 -14.51594 -14.33574 -14.18428 -13.95632 -13.61819 -13.51727 -13.36789 -13.12089 -12.83736 -12.77943 -12.71402 -12.61350 -12.39371 -12.13765 -12.04565 -11.91338 -11.85850 -11.64292 -10.87867 -10.61112 -10.47795 -10.15512 -9.51961 -9.30832 -8.17284 -6.31697 -0.20887 -0.02268 0.74954 1.42586 1.47009 1.53232 1.59099 1.62141 2.27963 2.40934 2.62862 2.94611 3.00791 3.13807 3.44838 3.62575 3.74801 3.97757 4.06090 4.08679 4.15816 4.21802 4.25770 4.40108 4.54700 4.56816 4.57524 4.63121 4.74609 4.86651 4.89750 4.91407 4.98822 5.04866 5.29230 5.35582 5.64847 5.82169 6.08151 6.10153 6.28646 6.52058 6.81450 7.18641 7.40956 8.88187 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009525 B = 0.003175 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.951740 B = 8818.130691 C =10743.573474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.054 3.946 4 C 0.117 3.883 5 N -0.584 5.584 6 C 0.254 3.746 7 C -0.551 4.551 8 H 0.054 0.946 9 C 0.030 3.970 10 N -0.914 5.914 11 Si 0.949 3.051 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.276 1.276 15 C 0.515 3.485 16 O -0.579 6.579 17 C 0.052 3.948 18 O -0.303 6.303 19 C 0.127 3.873 20 C -0.175 4.175 21 C -0.089 4.089 22 C 0.059 3.941 23 F -0.132 7.132 24 C -0.038 4.038 25 Cl -0.039 7.039 26 C -0.120 4.120 27 H 0.042 0.958 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.033 0.967 35 H 0.030 0.970 36 H 0.268 0.732 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.156 0.844 40 H 0.173 0.827 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 6.480 -8.053 10.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.023 4.023 4 C -0.006 4.006 5 N -0.314 5.314 6 C 0.133 3.867 7 C -0.589 4.589 8 H 0.072 0.928 9 C -0.172 4.172 10 N -0.552 5.552 11 Si 0.776 3.224 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.202 1.202 15 C 0.303 3.697 16 O -0.461 6.461 17 C -0.026 4.026 18 O -0.216 6.216 19 C 0.080 3.920 20 C -0.193 4.193 21 C -0.108 4.108 22 C 0.039 3.961 23 F -0.111 7.111 24 C -0.066 4.066 25 Cl -0.010 7.010 26 C -0.140 4.140 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.173 0.827 40 H 0.190 0.810 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.918 7.010 -8.100 11.102 hybrid contribution 0.703 -0.521 0.103 0.882 sum -2.214 6.489 -7.996 10.533 Atomic orbital electron populations 1.22873 0.80000 1.03376 1.00607 1.87996 1.21122 1.28158 1.95489 1.22934 0.93490 0.84849 1.01020 1.21551 0.92937 0.99613 0.86483 1.48051 1.63476 1.09125 1.10794 1.19175 0.96081 0.73684 0.97711 1.21732 0.97937 0.92540 1.46727 0.92772 1.25533 1.00496 0.96348 0.94791 1.70018 1.35769 1.01543 1.47915 0.85636 0.80501 0.78193 0.78119 1.19692 1.20800 1.20153 1.20141 0.77480 0.86556 0.85553 1.90621 1.55670 1.15148 1.84642 1.22568 1.04041 0.89630 0.86362 1.86091 1.81144 1.35299 1.19045 1.19013 0.95073 0.92892 0.84983 1.21538 1.03926 0.94762 0.99116 1.21156 0.97726 1.01085 0.90803 1.17367 1.05295 0.90948 0.82464 1.91511 1.87981 1.90800 1.40802 1.20601 1.05183 0.89165 0.91638 1.98385 1.93946 1.57494 1.51162 1.20142 1.03418 1.01120 0.89285 0.93969 0.89216 0.92480 0.89911 0.94085 0.89578 0.88710 0.94846 0.95238 0.92322 0.87545 0.87491 0.82672 0.80962 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.41 -13.46 9.53 -148.98 -1.42 -14.88 16 3 C 0.05 1.63 6.28 71.98 0.45 2.08 16 4 C 0.12 4.02 5.81 86.38 0.50 4.52 16 5 N -0.58 -23.16 2.42 -826.15 -2.00 -25.15 16 6 C 0.25 11.36 4.78 85.63 0.41 11.77 16 7 C -0.55 -26.81 9.28 25.60 0.24 -26.57 16 8 H 0.05 2.69 7.81 -2.91 -0.02 2.66 16 9 C 0.03 1.46 5.46 84.65 0.46 1.92 16 10 N -0.91 -47.48 13.29 21.45 0.28 -47.19 16 11 Si 0.95 39.72 29.54 68.60 2.03 41.75 16 12 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 13 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 14 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 15 C 0.51 20.45 7.75 87.66 0.68 21.13 16 16 O -0.58 -25.29 16.08 15.99 0.26 -25.03 16 17 C 0.05 1.77 3.77 71.24 0.27 2.04 16 18 O -0.30 -10.21 9.67 -73.81 -0.71 -10.92 16 19 C 0.13 3.58 6.68 22.49 0.15 3.73 16 20 C -0.17 -4.38 9.04 22.37 0.20 -4.17 16 21 C -0.09 -1.96 10.02 22.30 0.22 -1.74 16 22 C 0.06 1.42 7.27 22.39 0.16 1.58 16 23 F -0.13 -3.20 16.83 44.97 0.76 -2.45 16 24 C -0.04 -0.92 6.32 22.35 0.14 -0.78 16 25 Cl -0.04 -0.85 28.61 -2.72 -0.08 -0.93 16 26 C -0.12 -3.06 9.77 22.38 0.22 -2.84 16 27 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.09 3.01 8.07 -2.39 -0.02 2.99 16 33 H 0.09 3.12 7.42 -2.39 -0.02 3.10 16 34 H 0.03 1.65 7.11 -2.39 -0.02 1.63 16 35 H 0.03 1.33 6.44 -2.38 -0.02 1.32 16 36 H 0.27 13.21 8.31 -92.70 -0.77 12.44 16 37 H 0.11 3.31 6.91 -2.39 -0.02 3.29 16 38 H 0.11 3.70 7.53 -2.39 -0.02 3.68 16 39 H 0.16 3.80 6.30 -2.91 -0.02 3.78 16 40 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 41 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -59.40 373.27 5.54 -53.87 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 1.06 Total: 16.39 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 5.36 Total: 14.55 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -1.71 Total: -72.35 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -1.88 Total: -50.83 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.76 Total: -2.45 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -59.40 5.54 -53.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214959.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.156 kcal (2) G-P(sol) polarization free energy of solvation -59.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds