Wall clock time and date at job start Wed Apr 1 2020 02:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34135 * 125.70164 * 2 1 4 4 C 1.38598 * 107.34242 * 180.18387 * 3 2 1 5 5 C 1.46955 * 126.48658 * 179.87019 * 4 3 2 6 6 O 1.21435 * 119.99998 * 359.70835 * 5 4 3 7 7 C 1.49170 * 120.00081 * 179.71624 * 5 4 3 8 8 O 1.21411 * 119.99909 * 359.97438 * 7 5 4 9 9 N 1.34777 * 120.00163 * 180.02562 * 7 5 4 10 10 C 1.39862 * 120.00300 * 185.52583 * 9 7 5 11 11 C 1.38733 * 120.10741 * 24.82688 * 10 9 7 12 12 C 1.38211 * 120.00596 * 180.02562 * 11 10 9 13 13 C 1.38344 * 120.21694 * 359.95950 * 12 11 10 14 14 C 1.38182 * 120.21818 * 0.02562 * 13 12 11 15 15 C 1.38799 * 119.99758 * 0.02926 * 14 13 12 16 16 S 1.76199 * 120.11082 * 180.02562 * 15 14 13 17 17 C 1.81398 * 102.99980 * 359.95091 * 16 15 14 18 18 C 1.50704 * 109.47027 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99703 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00068 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99560 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 120.00036 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47416 * 89.99755 * 22 20 18 24 24 H 1.48500 * 109.47099 * 209.99892 * 22 20 18 25 25 H 1.48501 * 109.47118 * 329.99704 * 22 20 18 26 26 C 1.41550 * 107.02633 * 359.60997 * 4 3 2 27 27 N 1.30353 * 107.99358 * 0.23746 * 26 4 3 28 28 H 1.09006 * 109.46632 * 270.27191 * 1 2 3 29 29 H 1.08998 * 109.47582 * 30.27016 * 1 2 3 30 30 H 1.09002 * 109.47090 * 150.27339 * 1 2 3 31 31 H 1.07999 * 126.32697 * 0.06565 * 3 2 1 32 32 H 0.97006 * 119.99524 * 5.51662 * 9 7 5 33 33 H 1.08002 * 119.99969 * 0.02564 * 11 10 9 34 34 H 1.07999 * 119.89251 * 179.97438 * 12 11 10 35 35 H 1.07997 * 119.88753 * 179.74237 * 13 12 11 36 36 H 1.08006 * 120.00032 * 179.97438 * 14 13 12 37 37 H 1.09001 * 109.47347 * 300.00176 * 17 16 15 38 38 H 1.08994 * 109.47471 * 60.00170 * 17 16 15 39 39 H 0.97002 * 119.99152 * 179.97438 * 21 20 18 40 40 H 1.07995 * 126.00465 * 180.27817 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2477 1.0893 0.0000 4 6 3.5632 0.6527 -0.0042 5 6 4.7647 1.4989 -0.0085 6 8 4.6556 2.7083 -0.0138 7 6 6.1183 0.8721 -0.0064 8 8 6.2274 -0.3371 -0.0007 9 7 7.2203 1.6481 -0.0097 10 6 8.4862 1.0647 -0.1244 11 6 8.6289 -0.1745 -0.7317 12 6 9.8808 -0.7494 -0.8434 13 6 10.9949 -0.0927 -0.3520 14 6 10.8633 1.1421 0.2542 15 6 9.6102 1.7271 0.3722 16 16 9.4390 3.3018 1.1441 17 6 11.1442 3.7205 1.5995 18 6 11.1664 5.0637 2.2826 19 1 10.2466 5.6108 2.4278 20 6 12.3609 5.5945 2.7212 21 7 13.4809 4.9283 2.5438 22 14 12.3884 7.2595 3.5672 23 1 12.2191 7.0740 5.0309 24 1 13.6866 7.9292 3.3001 25 1 11.2813 8.0993 3.0434 26 6 3.5303 -0.7624 0.0024 27 7 2.2815 -1.1361 0.0049 28 1 -0.3633 0.0049 1.0277 29 1 -0.3634 0.8875 -0.5180 30 1 -0.3633 -0.8924 -0.5096 31 1 1.9145 2.1166 0.0010 32 1 7.1353 2.6114 0.0673 33 1 7.7617 -0.6901 -1.1171 34 1 9.9897 -1.7143 -1.3161 35 1 11.9700 -0.5487 -0.4385 36 1 11.7354 1.6514 0.6369 37 1 11.5361 2.9621 2.2772 38 1 11.7611 3.7590 0.7017 39 1 14.3214 5.3020 2.8521 40 1 4.3889 -1.4174 0.0056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108199915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:02 Heat of formation + Delta-G solvation = 23.692034 kcal Electronic energy + Delta-G solvation = -25822.491545 eV Core-core repulsion = 21923.070289 eV Total energy + Delta-G solvation = -3899.421256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.58059 -41.74954 -40.04898 -39.09676 -36.10631 -35.33582 -34.39760 -32.17826 -31.59096 -30.93788 -30.59528 -28.59853 -26.42476 -25.42135 -24.15651 -23.71305 -22.46267 -21.89768 -20.87937 -19.56417 -18.80760 -18.33364 -18.18344 -17.73720 -17.06133 -16.82529 -16.56467 -16.43139 -15.98978 -15.88414 -15.44932 -15.28045 -15.00987 -14.85219 -14.68335 -14.57511 -14.27275 -14.02721 -13.86030 -13.52117 -13.48192 -13.19837 -12.94630 -12.77366 -12.61270 -12.46738 -11.93979 -11.85594 -11.65837 -11.54973 -10.99037 -10.87165 -10.66187 -10.63224 -10.50465 -9.86764 -9.37869 -8.36699 -8.24562 -6.50872 -0.52928 0.22949 0.34315 0.72846 0.79564 1.33274 1.37607 1.40476 1.41198 1.53342 1.59979 1.78538 2.23557 2.34897 2.76980 2.95701 2.98586 3.53256 3.73701 3.85755 3.93098 4.13829 4.16610 4.32855 4.41296 4.43189 4.44805 4.53239 4.61623 4.71954 4.83349 4.85286 4.89179 5.07872 5.22659 5.35475 5.40715 5.52011 5.54888 5.73842 5.80500 5.82777 5.99336 6.18820 6.45796 6.55788 6.66843 7.17771 8.75263 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.014196 B = 0.002457 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.934720 B =11395.178113 C =13186.120453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.355 5.355 3 C 0.157 3.843 4 C -0.344 4.344 5 C 0.438 3.562 6 O -0.453 6.453 7 C 0.488 3.512 8 O -0.501 6.501 9 N -0.639 5.639 10 C 0.139 3.861 11 C -0.118 4.118 12 C -0.103 4.103 13 C -0.111 4.111 14 C -0.131 4.131 15 C -0.118 4.118 16 S -0.165 6.165 17 C 0.085 3.915 18 C -0.542 4.542 19 H 0.066 0.934 20 C 0.018 3.982 21 N -0.920 5.920 22 Si 0.977 3.023 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.264 1.264 26 C 0.110 3.890 27 N -0.330 5.330 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.099 0.901 31 H 0.226 0.774 32 H 0.421 0.579 33 H 0.157 0.843 34 H 0.165 0.835 35 H 0.151 0.849 36 H 0.114 0.886 37 H 0.022 0.978 38 H 0.025 0.975 39 H 0.272 0.728 40 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.383 -11.390 -8.076 27.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.131 5.131 3 C 0.002 3.998 4 C -0.357 4.357 5 C 0.313 3.687 6 O -0.328 6.328 7 C 0.273 3.727 8 O -0.376 6.376 9 N -0.284 5.284 10 C 0.039 3.961 11 C -0.139 4.139 12 C -0.124 4.124 13 C -0.131 4.131 14 C -0.156 4.156 15 C -0.233 4.233 16 S 0.080 5.920 17 C -0.062 4.062 18 C -0.581 4.581 19 H 0.084 0.916 20 C -0.184 4.184 21 N -0.558 5.558 22 Si 0.800 3.200 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.188 1.188 26 C -0.077 4.077 27 N -0.150 5.150 28 H 0.115 0.885 29 H 0.143 0.857 30 H 0.118 0.882 31 H 0.242 0.758 32 H 0.260 0.740 33 H 0.174 0.826 34 H 0.182 0.818 35 H 0.169 0.831 36 H 0.132 0.868 37 H 0.041 0.959 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -25.227 -11.838 -7.805 28.939 hybrid contribution 2.389 1.256 0.445 2.736 sum -22.837 -10.582 -7.360 26.224 Atomic orbital electron populations 1.22507 0.70392 1.07034 1.05689 1.48938 1.09025 1.03224 1.51892 1.23734 0.89137 0.95321 0.91624 1.20348 0.93134 0.94394 1.27838 1.21130 0.87501 0.87796 0.72236 1.90626 1.88813 1.16422 1.36930 1.21105 0.86582 0.87509 0.77532 1.90598 1.86725 1.13826 1.46492 1.43413 1.03911 1.12062 1.69023 1.17395 0.82603 0.95406 1.00710 1.21475 0.99979 0.93635 0.98814 1.21420 0.90707 1.00952 0.99274 1.21382 1.00628 0.93488 0.97611 1.21234 0.95081 0.97671 1.01585 1.21825 0.96391 0.99998 1.05102 1.84857 1.19797 1.16339 1.71034 1.20995 0.87462 0.99512 0.98280 1.20945 0.94528 1.02821 1.39838 0.91594 1.25892 0.94440 1.02103 0.95928 1.70052 0.99025 1.40196 1.46559 0.85258 0.78049 0.77949 0.78703 1.19455 1.20011 1.18841 1.24725 0.95333 0.94262 0.93423 1.77215 1.02437 1.08961 1.26347 0.88538 0.85678 0.88215 0.75811 0.74036 0.82604 0.81794 0.83088 0.86827 0.95929 0.95721 0.91932 0.77832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.27 11.44 127.77 1.46 1.74 16 2 N -0.35 -4.86 3.97 -367.39 -1.46 -6.32 16 3 C 0.16 2.23 11.32 84.43 0.96 3.19 16 4 C -0.34 -7.23 6.12 -20.09 -0.12 -7.35 16 5 C 0.44 10.94 7.19 27.50 0.20 11.14 16 6 O -0.45 -12.45 17.04 -3.51 -0.06 -12.51 16 7 C 0.49 13.77 7.67 87.18 0.67 14.44 16 8 O -0.50 -14.35 11.41 -3.44 -0.04 -14.39 16 9 N -0.64 -20.15 5.15 -304.51 -1.57 -21.72 16 10 C 0.14 4.76 6.44 38.31 0.25 5.01 16 11 C -0.12 -3.44 8.71 22.38 0.20 -3.24 16 12 C -0.10 -2.59 10.04 22.29 0.22 -2.37 16 13 C -0.11 -3.18 10.04 22.28 0.22 -2.96 16 14 C -0.13 -4.88 9.36 22.39 0.21 -4.67 16 15 C -0.12 -4.62 6.13 22.73 0.14 -4.48 16 16 S -0.17 -7.34 20.56 -56.49 -1.16 -8.51 16 17 C 0.08 4.49 4.09 71.24 0.29 4.78 16 18 C -0.54 -30.56 9.13 25.60 0.23 -30.33 16 19 H 0.07 3.66 7.71 -2.91 -0.02 3.64 16 20 C 0.02 1.00 5.46 84.65 0.46 1.46 16 21 N -0.92 -53.28 13.29 21.45 0.28 -52.99 16 22 Si 0.98 43.11 29.54 68.60 2.03 45.14 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 25 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 26 C 0.11 2.39 11.13 85.73 0.95 3.35 16 27 N -0.33 -6.80 12.48 -56.15 -0.70 -7.50 16 28 H 0.10 0.11 8.14 -2.38 -0.02 0.09 16 29 H 0.12 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.23 1.53 8.06 -2.91 -0.02 1.50 16 32 H 0.42 13.52 7.12 -92.70 -0.66 12.86 16 33 H 0.16 4.21 5.79 -2.91 -0.02 4.19 16 34 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 35 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 36 H 0.11 4.69 5.88 -2.91 -0.02 4.67 16 37 H 0.02 1.26 7.75 -2.39 -0.02 1.24 16 38 H 0.02 1.37 7.75 -2.39 -0.02 1.35 16 39 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 40 H 0.21 4.41 6.25 -2.91 -0.02 4.39 16 Total: -1.00 -71.62 364.17 4.11 -67.51 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.45 Total: 21.59 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 6.34 Total: -10.30 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -3.45 Total: -88.53 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.10 Total: -26.90 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -7.34 SS G_CDS: -1.16 Total: -8.51 kcal Total: -71.62 4.11 -67.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108199915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.200 kcal (2) G-P(sol) polarization free energy of solvation -71.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds