Wall clock time and date at job start Wed Apr 1 2020 02:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00416 * 2 1 4 4 N 1.46498 * 109.47283 * 124.99878 * 3 2 1 5 5 C 1.36560 * 119.72466 * 90.00250 * 4 3 2 6 6 S 1.76198 * 118.47672 * 359.97438 * 5 4 3 7 7 N 1.31016 * 123.05039 * 179.97438 * 5 4 3 8 8 C 1.35400 * 121.55858 * 0.02562 * 7 5 4 9 9 C 1.39724 * 121.47177 * 180.02562 * 8 7 5 10 10 C 1.38978 * 119.43257 * 179.97438 * 9 8 7 11 11 C 1.47895 * 119.76114 * 180.02562 * 10 9 8 12 12 O 1.21582 * 119.99763 * 212.66315 * 11 10 9 13 13 N 1.34769 * 120.00031 * 32.66432 * 11 10 9 14 14 C 1.46507 * 120.00212 * 4.36814 * 13 11 10 15 15 C 1.36770 * 120.00086 * 184.37042 * 13 11 10 16 16 H 1.07999 * 120.00079 * 342.34036 * 15 13 11 17 17 C 1.39123 * 119.99830 * 162.34081 * 15 13 11 18 18 N 1.31310 * 120.00133 * 342.79228 * 17 15 13 19 19 Si 1.86805 * 119.99773 * 162.79112 * 17 15 13 20 20 H 1.48498 * 109.47008 * 60.00157 * 19 17 15 21 21 H 1.48498 * 109.47242 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47149 * 299.99878 * 19 17 15 23 23 C 1.40150 * 120.47634 * 0.04994 * 10 9 8 24 24 C 1.36489 * 120.59663 * 359.94465 * 23 10 9 25 25 C 1.39490 * 119.89043 * 0.03103 * 24 23 10 26 26 C 1.35282 * 119.73050 * 269.72860 * 4 3 2 27 27 O 1.21719 * 121.20651 * 359.97438 * 26 4 3 28 28 H 1.08007 * 119.99929 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.00158 * 179.72583 * 1 2 3 30 30 H 1.08007 * 119.99929 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.46578 * 245.00461 * 3 2 1 32 32 H 1.09000 * 109.46685 * 4.99570 * 3 2 1 33 33 H 1.41002 * 99.99993 * 180.02562 * 6 5 4 34 34 H 1.07994 * 120.28576 * 359.97438 * 9 8 7 35 35 H 1.09003 * 109.46574 * 29.78262 * 14 13 11 36 36 H 1.08992 * 109.47032 * 149.78100 * 14 13 11 37 37 H 1.08998 * 109.46801 * 269.78425 * 14 13 11 38 38 H 0.97009 * 119.99620 * 180.02562 * 18 17 15 39 39 H 1.08000 * 119.69978 * 179.97438 * 23 10 9 40 40 H 1.07995 * 120.05188 * 180.02562 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.2650 0.8584 0.9741 6 16 4.7376 0.2275 -0.6016 7 7 5.1496 0.8517 1.9406 8 6 4.8534 1.3208 3.1757 9 6 5.7984 1.3132 4.2049 10 6 5.4489 1.8057 5.4566 11 6 6.4436 1.8016 6.5510 12 8 6.0815 1.6448 7.7010 13 7 7.7514 1.9717 6.2736 14 6 8.1783 2.2560 4.9012 15 6 8.6803 1.8790 7.2733 16 1 8.3721 1.9557 8.3055 17 6 10.0220 1.6858 6.9603 18 7 10.3628 1.2594 5.7661 19 14 11.3387 2.0329 8.2392 20 1 11.1183 1.1659 9.4245 21 1 12.6769 1.7496 7.6613 22 1 11.2675 3.4586 8.6485 23 6 4.1605 2.3057 5.6893 24 6 3.2294 2.3181 4.6914 25 6 3.5587 1.8292 3.4272 26 6 2.5881 1.8304 2.3218 27 8 1.4597 2.2604 2.4739 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9353 -0.0045 30 1 1.8500 -0.9354 -0.0004 31 1 2.6212 1.4024 -0.9315 32 1 1.3586 2.1316 0.0895 33 1 6.0716 -0.1386 -0.3287 34 1 6.7919 0.9279 4.0292 35 1 7.3885 2.7969 4.3798 36 1 9.0830 2.8635 4.9206 37 1 8.3807 1.3191 4.3823 38 1 11.2984 1.1243 5.5480 39 1 3.9022 2.6850 6.6670 40 1 2.2393 2.7058 4.8804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120865993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:27 Heat of formation + Delta-G solvation = 35.309309 kcal Electronic energy + Delta-G solvation = -27178.163716 eV Core-core repulsion = 23279.246223 eV Total energy + Delta-G solvation = -3898.917493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.60222 -39.36798 -37.86242 -37.36390 -35.42836 -34.85886 -33.10482 -32.19591 -30.87524 -30.04432 -27.42979 -26.49362 -25.26165 -25.01251 -23.60144 -21.93426 -20.64550 -20.42542 -18.83370 -18.77314 -17.86333 -17.10200 -16.62808 -16.35776 -15.94496 -15.59552 -15.19190 -14.93987 -14.82201 -14.44869 -14.21844 -14.04216 -13.86189 -13.51343 -13.36332 -13.16941 -12.74569 -12.35936 -12.24295 -11.99131 -11.76364 -11.61520 -11.60532 -11.41719 -11.17580 -10.85495 -10.52392 -10.43545 -10.40062 -10.06855 -10.04818 -9.79265 -9.25648 -9.15716 -8.82502 -8.52611 -7.93017 -7.75423 -6.55467 -3.97775 0.39098 0.59313 0.81147 1.64797 1.91859 2.16172 2.53976 2.61223 3.11434 3.15724 3.19592 3.72719 3.97582 4.09063 4.16949 4.29765 4.48004 4.64047 4.71837 4.87126 4.88850 4.99910 5.25344 5.28441 5.44380 5.48744 5.55672 5.55722 5.87886 6.03506 6.14806 6.22884 6.23171 6.27754 6.36140 6.55956 6.66383 6.71164 6.87344 7.05259 7.37790 7.56538 7.59020 7.91692 8.29175 8.99195 9.20377 9.79924 10.47481 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.018913 B = 0.002861 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.125561 B = 9783.203876 C =11019.567124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.182 4.182 3 C 0.120 3.880 4 N -0.526 5.526 5 C 0.383 3.617 6 S -0.038 6.038 7 N -0.518 5.518 8 C 0.150 3.850 9 C -0.094 4.094 10 C -0.044 4.044 11 C 0.461 3.539 12 O -0.586 6.586 13 N -0.421 5.421 14 C 0.101 3.899 15 C -0.304 4.304 16 H 0.107 0.893 17 C 0.032 3.968 18 N -0.865 5.865 19 Si 0.931 3.069 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.271 1.271 23 C -0.092 4.092 24 C -0.051 4.051 25 C -0.196 4.196 26 C 0.559 3.441 27 O -0.509 6.509 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.143 0.857 34 H 0.157 0.843 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.273 0.727 39 H 0.140 0.860 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.812 -0.898 -17.391 21.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.201 4.201 3 C -0.002 4.002 4 N -0.251 5.251 5 C 0.006 3.994 6 S 0.118 5.882 7 N -0.243 5.243 8 C 0.038 3.962 9 C -0.115 4.115 10 C -0.049 4.049 11 C 0.250 3.750 12 O -0.473 6.473 13 N -0.136 5.136 14 C -0.042 4.042 15 C -0.432 4.432 16 H 0.125 0.875 17 C -0.173 4.173 18 N -0.503 5.503 19 Si 0.756 3.244 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.196 1.196 23 C -0.112 4.112 24 C -0.071 4.071 25 C -0.203 4.203 26 C 0.352 3.648 27 O -0.384 6.384 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.174 0.826 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.158 0.842 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.598 -1.273 -17.720 21.216 hybrid contribution 0.789 0.376 1.594 1.818 sum -10.808 -0.896 -16.126 19.434 Atomic orbital electron populations 1.23959 0.95640 1.02468 0.97246 1.23083 0.96388 0.97965 1.02673 1.21096 0.92772 0.98310 0.87975 1.46323 1.10901 1.54481 1.13401 1.23933 0.83163 0.93842 0.98431 1.86956 1.20817 1.75953 1.04427 1.69152 1.29564 1.24989 1.00565 1.18512 0.91653 0.95579 0.90426 1.21651 1.00017 0.99659 0.90174 1.20509 0.95337 0.95533 0.93556 1.17806 0.82553 0.86633 0.87958 1.90622 1.79288 1.56659 1.20693 1.43569 1.04586 1.56897 1.08557 1.21933 0.98723 1.00668 0.82858 1.19775 0.86460 1.47347 0.89641 0.87497 1.25414 0.98631 0.95647 0.97622 1.69992 1.18919 1.40332 1.21029 0.85920 0.78748 0.79434 0.80260 1.19479 1.20749 1.19616 1.21012 0.91864 0.98674 0.99683 1.20591 0.99791 0.96292 0.90422 1.20457 0.94290 1.09834 0.95702 1.18405 0.87739 0.77177 0.81486 1.90830 1.19710 1.46314 1.81555 0.88045 0.87800 0.86311 0.87524 0.87585 0.89325 0.82614 0.94514 0.90585 0.91941 0.91651 0.84239 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 14.32 29.02 0.42 -0.76 16 2 C -0.18 -1.52 9.85 -36.02 -0.35 -1.88 16 3 C 0.12 1.07 5.32 -5.20 -0.03 1.05 16 4 N -0.53 -6.51 2.61 -118.66 -0.31 -6.82 16 5 C 0.38 4.73 7.82 -88.54 -0.69 4.03 16 6 S -0.04 -0.31 23.79 -107.50 -2.56 -2.86 16 7 N -0.52 -7.88 10.27 -10.81 -0.11 -7.99 16 8 C 0.15 2.57 6.63 -84.55 -0.56 2.01 16 9 C -0.09 -1.77 7.59 -38.75 -0.29 -2.06 16 10 C -0.04 -0.90 5.27 -104.95 -0.55 -1.45 16 11 C 0.46 11.46 7.35 -12.31 -0.09 11.37 16 12 O -0.59 -16.38 16.38 5.29 0.09 -16.29 16 13 N -0.42 -10.67 3.01 -123.26 -0.37 -11.04 16 14 C 0.10 2.23 7.07 59.85 0.42 2.66 16 15 C -0.30 -8.25 9.37 -15.02 -0.14 -8.39 16 16 H 0.11 3.02 7.33 -52.49 -0.38 2.64 16 17 C 0.03 0.82 5.00 -17.45 -0.09 0.73 16 18 N -0.87 -21.91 10.67 55.50 0.59 -21.31 16 19 Si 0.93 19.85 29.59 -169.99 -5.03 14.82 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 C -0.09 -1.66 9.51 -39.50 -0.38 -2.03 16 24 C -0.05 -0.83 9.60 -39.75 -0.38 -1.21 16 25 C -0.20 -3.25 5.90 -104.65 -0.62 -3.87 16 26 C 0.56 8.57 7.66 -12.44 -0.10 8.48 16 27 O -0.51 -8.44 16.27 5.17 0.08 -8.36 16 28 H 0.10 0.74 7.84 -52.48 -0.41 0.32 16 29 H 0.10 0.65 8.06 -52.48 -0.42 0.23 16 30 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.11 0.71 6.48 -51.93 -0.34 0.37 16 32 H 0.11 0.96 7.10 -51.93 -0.37 0.59 16 33 H 0.14 1.10 9.50 96.90 0.92 2.02 16 34 H 0.16 3.01 5.03 -52.49 -0.26 2.75 16 35 H 0.04 0.72 5.90 -51.93 -0.31 0.41 16 36 H 0.08 1.74 6.74 -51.93 -0.35 1.39 16 37 H 0.06 1.39 6.34 -51.93 -0.33 1.06 16 38 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 39 H 0.14 2.41 7.94 -52.49 -0.42 1.99 16 40 H 0.14 1.96 7.80 -52.49 -0.41 1.56 16 LS Contribution 354.57 15.07 5.34 5.34 Total: -1.00 -31.65 354.57 -8.34 -39.99 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -2.64 Total: 5.85 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: -3.43 Total: 8.67 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.20 Total: -47.17 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: 0.17 Total: -24.65 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -2.56 Total: -2.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.65 -8.34 -39.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120865993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.298 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds