Wall clock time and date at job start Wed Apr 1 2020 02:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00416 * 2 1 4 4 N 1.46498 * 109.47283 * 124.99878 * 3 2 1 5 5 C 1.36560 * 119.72466 * 90.00250 * 4 3 2 6 6 S 1.76198 * 118.47672 * 359.97438 * 5 4 3 7 7 N 1.31016 * 123.05039 * 179.97438 * 5 4 3 8 8 C 1.35400 * 121.55858 * 0.02562 * 7 5 4 9 9 C 1.39724 * 121.47177 * 180.02562 * 8 7 5 10 10 C 1.38978 * 119.43257 * 179.97438 * 9 8 7 11 11 C 1.47895 * 119.76114 * 180.02562 * 10 9 8 12 12 O 1.21582 * 119.99763 * 212.66315 * 11 10 9 13 13 N 1.34769 * 120.00031 * 32.66432 * 11 10 9 14 14 C 1.46507 * 120.00212 * 4.36814 * 13 11 10 15 15 C 1.36770 * 120.00086 * 184.37042 * 13 11 10 16 16 H 1.07999 * 120.00079 * 342.34036 * 15 13 11 17 17 C 1.39123 * 119.99830 * 162.34081 * 15 13 11 18 18 N 1.31310 * 120.00133 * 342.79228 * 17 15 13 19 19 Si 1.86805 * 119.99773 * 162.79112 * 17 15 13 20 20 H 1.48498 * 109.47008 * 60.00157 * 19 17 15 21 21 H 1.48498 * 109.47242 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47149 * 299.99878 * 19 17 15 23 23 C 1.40150 * 120.47634 * 0.04994 * 10 9 8 24 24 C 1.36489 * 120.59663 * 359.94465 * 23 10 9 25 25 C 1.39490 * 119.89043 * 0.03103 * 24 23 10 26 26 C 1.35282 * 119.73050 * 269.72860 * 4 3 2 27 27 O 1.21719 * 121.20651 * 359.97438 * 26 4 3 28 28 H 1.08007 * 119.99929 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.00158 * 179.72583 * 1 2 3 30 30 H 1.08007 * 119.99929 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.46578 * 245.00461 * 3 2 1 32 32 H 1.09000 * 109.46685 * 4.99570 * 3 2 1 33 33 H 1.41002 * 99.99993 * 180.02562 * 6 5 4 34 34 H 1.07994 * 120.28576 * 359.97438 * 9 8 7 35 35 H 1.09003 * 109.46574 * 29.78262 * 14 13 11 36 36 H 1.08992 * 109.47032 * 149.78100 * 14 13 11 37 37 H 1.08998 * 109.46801 * 269.78425 * 14 13 11 38 38 H 0.97009 * 119.99620 * 180.02562 * 18 17 15 39 39 H 1.08000 * 119.69978 * 179.97438 * 23 10 9 40 40 H 1.07995 * 120.05188 * 180.02562 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.2650 0.8584 0.9741 6 16 4.7376 0.2275 -0.6016 7 7 5.1496 0.8517 1.9406 8 6 4.8534 1.3208 3.1757 9 6 5.7984 1.3132 4.2049 10 6 5.4489 1.8057 5.4566 11 6 6.4436 1.8016 6.5510 12 8 6.0815 1.6448 7.7010 13 7 7.7514 1.9717 6.2736 14 6 8.1783 2.2560 4.9012 15 6 8.6803 1.8790 7.2733 16 1 8.3721 1.9557 8.3055 17 6 10.0220 1.6858 6.9603 18 7 10.3628 1.2594 5.7661 19 14 11.3387 2.0329 8.2392 20 1 11.1183 1.1659 9.4245 21 1 12.6769 1.7496 7.6613 22 1 11.2675 3.4586 8.6485 23 6 4.1605 2.3057 5.6893 24 6 3.2294 2.3181 4.6914 25 6 3.5587 1.8292 3.4272 26 6 2.5881 1.8304 2.3218 27 8 1.4597 2.2604 2.4739 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9353 -0.0045 30 1 1.8500 -0.9354 -0.0004 31 1 2.6212 1.4024 -0.9315 32 1 1.3586 2.1316 0.0895 33 1 6.0716 -0.1386 -0.3287 34 1 6.7919 0.9279 4.0292 35 1 7.3885 2.7969 4.3798 36 1 9.0830 2.8635 4.9206 37 1 8.3807 1.3191 4.3823 38 1 11.2984 1.1243 5.5480 39 1 3.9022 2.6850 6.6670 40 1 2.2393 2.7058 4.8804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120865993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:26 Heat of formation + Delta-G solvation = 16.392979 kcal Electronic energy + Delta-G solvation = -27178.983990 eV Core-core repulsion = 23279.246223 eV Total energy + Delta-G solvation = -3899.737767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.77144 -41.01185 -39.28849 -38.61588 -36.91421 -36.34423 -34.08381 -33.95933 -32.41301 -31.32486 -28.62002 -28.14906 -26.87815 -26.22320 -25.04167 -23.24243 -22.13383 -21.16491 -20.07461 -19.96351 -19.13298 -18.94428 -17.91610 -17.40899 -17.39231 -16.84434 -16.63812 -16.52490 -15.97646 -15.83138 -15.65347 -15.31437 -15.00161 -14.80736 -14.67129 -14.63733 -13.94440 -13.87201 -13.59785 -13.35592 -13.29895 -13.20220 -12.81499 -12.53842 -12.46746 -12.39175 -12.30188 -12.14463 -11.59407 -11.25351 -11.17920 -11.04917 -10.64477 -10.45849 -10.25211 -10.01583 -9.88247 -8.86545 -8.47808 -6.02876 -0.85617 -0.52002 -0.27795 0.87354 0.90200 1.20654 1.26354 1.40604 1.45482 1.51304 1.68410 2.08958 2.21216 2.74095 2.80598 2.94335 2.98272 3.16941 3.54872 3.72612 3.83423 3.96265 4.04040 4.07679 4.25472 4.28380 4.44878 4.59398 4.66563 4.71630 4.86657 4.90396 4.95656 5.00794 5.21895 5.24192 5.29618 5.36867 5.51064 5.64699 5.74132 5.94934 6.34002 6.39773 6.42208 7.01814 7.27120 7.85627 8.54453 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.018913 B = 0.002861 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.125561 B = 9783.203876 C =11019.567124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.196 4.196 3 C 0.115 3.885 4 N -0.522 5.522 5 C 0.387 3.613 6 S 0.032 5.968 7 N -0.549 5.549 8 C 0.160 3.840 9 C -0.099 4.099 10 C -0.060 4.060 11 C 0.455 3.545 12 O -0.629 6.629 13 N -0.435 5.435 14 C 0.118 3.882 15 C -0.351 4.351 16 H 0.081 0.919 17 C 0.004 3.996 18 N -0.880 5.880 19 Si 0.994 3.006 20 H -0.274 1.274 21 H -0.266 1.266 22 H -0.267 1.267 23 C -0.101 4.101 24 C -0.035 4.035 25 C -0.206 4.206 26 C 0.560 3.440 27 O -0.521 6.521 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.134 0.866 32 H 0.107 0.893 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.280 0.720 39 H 0.140 0.860 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.666 -1.219 -20.653 24.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.215 4.215 3 C -0.005 4.005 4 N -0.245 5.245 5 C 0.012 3.988 6 S 0.189 5.811 7 N -0.276 5.276 8 C 0.048 3.952 9 C -0.120 4.120 10 C -0.065 4.065 11 C 0.245 3.755 12 O -0.518 6.518 13 N -0.150 5.150 14 C -0.025 4.025 15 C -0.479 4.479 16 H 0.098 0.902 17 C -0.200 4.200 18 N -0.516 5.516 19 Si 0.817 3.183 20 H -0.199 1.199 21 H -0.190 1.190 22 H -0.192 1.192 23 C -0.121 4.121 24 C -0.055 4.055 25 C -0.214 4.214 26 C 0.352 3.648 27 O -0.397 6.397 28 H 0.121 0.879 29 H 0.135 0.865 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.125 0.875 33 H 0.109 0.891 34 H 0.164 0.836 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.158 0.842 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.469 -1.604 -21.083 24.546 hybrid contribution 0.854 0.380 2.263 2.448 sum -11.614 -1.224 -18.820 22.149 Atomic orbital electron populations 1.24159 0.95576 1.03293 0.95699 1.23097 0.96686 0.97705 1.04009 1.21422 0.92666 0.98898 0.87502 1.46419 1.11466 1.53205 1.13423 1.24841 0.82628 0.91604 0.99761 1.86849 1.20654 1.73893 0.99736 1.69211 1.30687 1.27371 1.00338 1.18479 0.91192 0.94532 0.90985 1.21428 1.00153 1.00264 0.90160 1.20168 0.95189 0.98156 0.92985 1.18499 0.83154 0.85266 0.88540 1.90560 1.80190 1.58239 1.22834 1.43754 1.04727 1.57185 1.09343 1.21823 0.98774 1.00336 0.81517 1.19714 0.87954 1.50965 0.89251 0.90153 1.26166 0.99641 0.94449 0.99730 1.70040 1.19735 1.39789 1.22056 0.84991 0.76505 0.79170 0.77683 1.19872 1.19003 1.19178 1.20978 0.91268 0.99434 1.00377 1.20739 1.00036 0.94950 0.89740 1.20729 0.94631 1.09512 0.96507 1.18202 0.87164 0.77296 0.82101 1.90825 1.19978 1.46870 1.82051 0.87852 0.86476 0.85807 0.84889 0.87519 0.89093 0.83626 0.92318 0.91849 0.92430 0.90951 0.84239 0.82290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 14.32 67.79 0.97 -0.84 16 2 C -0.20 -2.64 9.85 25.65 0.25 -2.38 16 3 C 0.11 1.67 5.32 85.63 0.46 2.12 16 4 N -0.52 -11.47 2.61 -647.23 -1.69 -13.15 16 5 C 0.39 8.47 7.82 179.62 1.41 9.87 16 6 S 0.03 0.38 23.79 -56.49 -1.34 -0.96 16 7 N -0.55 -15.83 10.27 -188.10 -1.93 -17.76 16 8 C 0.16 5.41 6.63 39.72 0.26 5.67 16 9 C -0.10 -3.80 7.59 22.81 0.17 -3.62 16 10 C -0.06 -2.55 5.27 -20.08 -0.11 -2.66 16 11 C 0.45 23.92 7.35 86.80 0.64 24.55 16 12 O -0.63 -37.41 16.38 -3.98 -0.07 -37.47 16 13 N -0.44 -23.24 3.01 -662.16 -2.00 -25.23 16 14 C 0.12 5.39 7.07 127.77 0.90 6.29 16 15 C -0.35 -20.04 9.37 84.14 0.79 -19.25 16 16 H 0.08 4.88 7.33 -2.91 -0.02 4.86 16 17 C 0.00 0.23 5.00 84.98 0.42 0.65 16 18 N -0.88 -45.15 10.67 21.69 0.23 -44.91 16 19 Si 0.99 41.29 29.59 68.60 2.03 43.32 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 21 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 23 C -0.10 -3.69 9.51 22.33 0.21 -3.47 16 24 C -0.04 -1.12 9.60 22.16 0.21 -0.91 16 25 C -0.21 -6.62 5.90 -19.88 -0.12 -6.74 16 26 C 0.56 16.02 7.66 86.49 0.66 16.68 16 27 O -0.52 -16.14 16.27 -4.41 -0.07 -16.21 16 28 H 0.10 1.21 7.84 -2.91 -0.02 1.19 16 29 H 0.12 1.10 8.06 -2.91 -0.02 1.08 16 30 H 0.12 1.54 8.06 -2.91 -0.02 1.52 16 31 H 0.13 1.19 6.48 -2.39 -0.02 1.17 16 32 H 0.11 1.60 7.10 -2.39 -0.02 1.59 16 33 H 0.14 1.70 9.50 73.80 0.70 2.41 16 34 H 0.15 5.83 5.03 -2.91 -0.01 5.81 16 35 H 0.06 2.36 5.90 -2.39 -0.01 2.35 16 36 H 0.06 3.00 6.74 -2.39 -0.02 2.98 16 37 H 0.06 2.65 6.34 -2.39 -0.02 2.64 16 38 H 0.28 13.32 8.31 -92.70 -0.77 12.55 16 39 H 0.14 5.02 7.94 -2.91 -0.02 5.00 16 40 H 0.16 4.30 7.80 -2.91 -0.02 4.28 16 Total: -1.00 -71.58 354.57 4.13 -67.45 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 1.82 Total: 18.97 kcal Atomic # 6 Polarization: 18.82 SS G_CDS: 7.14 Total: 25.96 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -5.38 Total: -101.06 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -0.14 Total: -53.68 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -1.34 Total: -0.96 kcal Total: -71.58 4.13 -67.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120865993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.844 kcal (2) G-P(sol) polarization free energy of solvation -71.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds