Wall clock time and date at job start Wed Apr 1 2020 03:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81395 * 102.99932 * 2 1 4 4 C 1.53001 * 109.47090 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47436 * 60.00071 * 4 3 2 6 6 C 1.52999 * 109.47089 * 179.97438 * 4 3 2 7 7 C 1.52994 * 109.47265 * 181.21309 * 6 4 3 8 8 O 1.42894 * 109.47463 * 181.97085 * 7 6 4 9 9 N 1.46499 * 109.47015 * 299.99714 * 4 3 2 10 10 S 1.65599 * 119.99967 * 114.88678 * 9 4 3 11 11 O 1.42103 * 106.40145 * 176.07062 * 10 9 4 12 12 O 1.42098 * 106.40283 * 308.99462 * 10 9 4 13 13 C 1.76201 * 107.21689 * 62.53395 * 10 9 4 14 14 C 1.38634 * 119.74776 * 266.18369 * 13 10 9 15 15 C 1.37623 * 120.24670 * 179.71692 * 14 13 10 16 16 C 1.40708 * 119.74706 * 0.57428 * 15 14 13 17 17 C 1.41390 * 120.24607 * 179.68275 * 16 15 14 18 18 H 1.07998 * 120.00135 * 156.74199 * 17 16 15 19 19 C 1.39947 * 120.00266 * 336.73124 * 17 16 15 20 20 N 1.30822 * 119.99597 * 331.75331 * 19 17 16 21 21 Si 1.86794 * 120.00141 * 151.75088 * 19 17 16 22 22 H 1.48502 * 109.47017 * 94.99393 * 21 19 17 23 23 H 1.48499 * 109.46963 * 214.99033 * 21 19 17 24 24 H 1.48499 * 109.47337 * 334.98999 * 21 19 17 25 25 C 1.40719 * 119.51098 * 359.69696 * 16 15 14 26 26 C 1.37627 * 119.74365 * 0.02562 * 25 16 15 27 27 H 1.09005 * 109.47190 * 60.00187 * 1 2 3 28 28 H 1.08996 * 109.47253 * 300.00115 * 1 2 3 29 29 H 1.09006 * 109.46945 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47106 * 300.00224 * 3 2 1 31 31 H 1.09001 * 109.47242 * 59.99699 * 3 2 1 32 32 H 1.09001 * 109.47328 * 301.21950 * 6 4 3 33 33 H 1.09006 * 109.47050 * 61.21325 * 6 4 3 34 34 H 1.09005 * 109.47281 * 301.97166 * 7 6 4 35 35 H 1.08994 * 109.47090 * 61.96959 * 7 6 4 36 36 H 0.96703 * 114.00562 * 179.97438 * 8 7 6 37 37 H 0.97002 * 119.99894 * 294.89138 * 9 4 3 38 38 H 1.08004 * 119.87814 * 359.97438 * 14 13 10 39 39 H 1.08005 * 120.12670 * 180.27318 * 15 14 13 40 40 H 0.97006 * 119.99913 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.13187 * 179.97438 * 25 16 15 42 42 H 1.07992 * 119.87317 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.1609 1.4704 -0.8908 6 6 4.0865 3.4307 -0.0013 7 6 5.6063 3.6032 -0.0325 8 8 5.9289 4.9946 0.0132 9 7 4.3059 1.3087 1.1952 10 16 5.3051 -0.0035 1.0461 11 8 5.7514 -0.3190 2.3578 12 8 4.6262 -0.9320 0.2117 13 6 6.7276 0.5235 0.1498 14 6 6.7729 0.3608 -1.2262 15 6 7.8764 0.7740 -1.9372 16 6 8.9663 1.3523 -1.2608 17 6 10.1081 1.7744 -1.9800 18 1 10.7594 2.5293 -1.5647 19 6 10.3946 1.2139 -3.2299 20 7 10.0070 -0.0051 -3.5044 21 14 11.3304 2.2061 -4.5062 22 1 12.7768 1.8800 -4.4237 23 1 10.8242 1.8719 -5.8616 24 1 11.1341 3.6553 -4.2480 25 6 8.9117 1.5073 0.1368 26 6 7.7955 1.0921 0.8266 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8031 2.2371 -0.8900 31 1 1.8031 2.2371 0.8900 32 1 3.6489 3.9043 -0.8801 33 1 3.6863 3.8964 0.8994 34 1 6.0470 3.0997 0.8280 35 1 6.0026 3.1684 -0.9500 36 1 6.8780 5.1791 -0.0029 37 1 4.0937 1.6593 2.0744 38 1 5.9373 -0.0881 -1.7427 39 1 7.9078 0.6503 -3.0097 40 1 10.2052 -0.3935 -4.3708 41 1 9.7427 1.9495 0.6661 42 1 7.7515 1.2096 1.8992 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121222007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:10 Heat of formation + Delta-G solvation = -120.856557 kcal Electronic energy + Delta-G solvation = -26816.133246 eV Core-core repulsion = 23013.595093 eV Total energy + Delta-G solvation = -3802.538153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -37.92213 -37.46421 -36.39717 -35.77099 -35.01072 -34.11585 -30.72255 -30.34450 -29.55235 -29.31179 -28.55176 -25.84967 -23.28280 -21.62264 -21.20840 -21.01107 -19.06065 -17.67725 -17.21060 -17.13945 -16.63019 -16.16868 -15.66207 -15.54114 -14.86433 -14.40087 -14.32788 -14.14208 -13.99066 -13.72611 -13.43178 -13.34111 -13.20471 -13.01900 -12.51447 -12.27780 -12.19712 -11.83328 -11.74713 -11.50553 -11.40926 -11.33113 -11.31349 -11.19029 -11.09969 -10.91686 -10.67252 -10.52876 -9.79161 -9.76318 -9.66922 -9.63391 -9.44149 -9.14872 -8.04836 -7.75473 -7.49522 -7.29330 -4.83041 1.28273 1.74350 2.23301 2.68369 2.81122 2.85595 2.87158 2.93444 3.60693 3.70058 4.13889 4.23976 4.57772 4.82544 4.91912 5.07623 5.11175 5.13308 5.21938 5.24270 5.31729 5.43858 5.53949 5.64596 5.72872 5.84308 5.95384 6.04287 6.09499 6.20284 6.32202 6.62408 6.66369 6.82786 7.00269 7.25555 7.30183 7.38383 7.57299 7.70042 7.84184 7.90788 8.24751 8.44648 8.59618 9.65011 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.003646 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.584450 B = 7677.443991 C = 7945.632478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.201 6.201 3 C -0.108 4.108 4 C 0.181 3.819 5 H 0.102 0.898 6 C -0.121 4.121 7 C 0.074 3.926 8 O -0.582 6.582 9 N -1.119 6.119 10 S 2.685 3.315 11 O -0.987 6.987 12 O -0.962 6.962 13 C -0.794 4.794 14 C -0.011 4.011 15 C -0.191 4.191 16 C 0.142 3.858 17 C -0.438 4.438 18 H 0.089 0.911 19 C 0.080 3.920 20 N -0.748 5.748 21 Si 0.908 3.092 22 H -0.266 1.266 23 H -0.270 1.270 24 H -0.255 1.255 25 C -0.241 4.241 26 C 0.006 3.994 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.382 0.618 37 H 0.410 0.590 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.292 0.708 41 H 0.098 0.902 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.265 6.202 2.080 13.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.025 5.975 3 C -0.259 4.259 4 C 0.071 3.929 5 H 0.120 0.880 6 C -0.161 4.161 7 C -0.004 4.004 8 O -0.388 6.388 9 N -0.873 5.873 10 S 2.784 3.216 11 O -0.978 6.978 12 O -0.952 6.952 13 C -0.890 4.890 14 C -0.031 4.031 15 C -0.211 4.211 16 C 0.138 3.862 17 C -0.465 4.465 18 H 0.107 0.893 19 C -0.146 4.146 20 N -0.368 5.368 21 Si 0.730 3.270 22 H -0.191 1.191 23 H -0.195 1.195 24 H -0.178 1.178 25 C -0.262 4.262 26 C -0.014 4.014 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.229 0.771 37 H 0.243 0.757 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.443 4.210 2.098 12.372 hybrid contribution 0.586 1.847 -0.644 2.042 sum -10.856 6.058 1.454 12.517 Atomic orbital electron populations 1.23488 0.97546 1.06146 1.04180 1.88271 1.03283 1.08042 1.97902 1.23928 0.99934 0.96822 1.05201 1.20224 0.90380 0.93450 0.88806 0.88022 1.21812 0.96290 0.94546 1.03489 1.22233 0.94649 0.81701 1.01781 1.86307 1.29648 1.25086 1.97771 1.55942 1.65556 1.52561 1.13255 1.01561 0.73646 0.72940 0.73495 1.93491 1.82307 1.82647 1.39374 1.93532 1.73599 1.58910 1.69137 1.29143 1.19302 1.34293 1.06268 1.20233 0.97381 0.93969 0.91539 1.21120 0.93746 1.07241 0.98994 1.17755 0.91644 0.85807 0.90989 1.19906 1.07432 1.18475 1.00651 0.89284 1.26139 0.94979 0.94105 0.99338 1.69877 1.32325 1.11617 1.23015 0.86286 0.79854 0.81577 0.79238 1.19054 1.19465 1.17795 1.20955 0.98816 1.12286 0.94120 1.20111 0.92231 0.92193 0.96885 0.90985 0.91088 0.88378 0.89216 0.89765 0.90329 0.90811 0.92620 0.92457 0.77100 0.75719 0.87763 0.87170 0.89713 0.88379 0.88183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 10.76 101.05 1.09 -0.30 16 2 S -0.20 -2.78 20.17 -107.50 -2.17 -4.95 16 3 C -0.11 -1.19 5.63 37.16 0.21 -0.98 16 4 C 0.18 2.29 2.34 -67.93 -0.16 2.14 16 5 H 0.10 1.44 7.63 -51.93 -0.40 1.05 16 6 C -0.12 -1.43 5.29 -26.73 -0.14 -1.57 16 7 C 0.07 1.06 6.42 37.15 0.24 1.30 16 8 O -0.58 -8.22 13.66 -35.23 -0.48 -8.70 16 9 N -1.12 -15.75 4.17 -4.89 -0.02 -15.77 16 10 S 2.69 50.52 5.56 -107.50 -0.60 49.92 16 11 O -0.99 -21.11 17.35 -57.17 -0.99 -22.10 16 12 O -0.96 -20.03 15.10 -57.17 -0.86 -20.90 16 13 C -0.79 -16.36 4.99 -39.29 -0.20 -16.55 16 14 C -0.01 -0.24 9.31 -39.66 -0.37 -0.61 16 15 C -0.19 -4.47 8.76 -38.87 -0.34 -4.81 16 16 C 0.14 3.36 5.56 -106.83 -0.59 2.77 16 17 C -0.44 -10.22 8.98 -37.74 -0.34 -10.56 16 18 H 0.09 1.96 7.98 -52.49 -0.42 1.54 16 19 C 0.08 1.76 4.88 -17.34 -0.08 1.68 16 20 N -0.75 -17.37 11.57 55.55 0.64 -16.72 16 21 Si 0.91 16.29 29.64 -169.99 -5.04 11.25 16 22 H -0.27 -4.73 7.11 56.52 0.40 -4.32 16 23 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 24 H -0.25 -4.53 7.11 56.52 0.40 -4.13 16 25 C -0.24 -5.34 9.80 -38.87 -0.38 -5.72 16 26 C 0.01 0.12 8.57 -39.66 -0.34 -0.22 16 27 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 30 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.83 6.19 -51.93 -0.32 0.51 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.38 4.31 9.12 45.56 0.42 4.72 16 37 H 0.41 4.84 8.96 -34.47 -0.31 4.53 16 38 H 0.10 2.14 7.52 -52.48 -0.39 1.74 16 39 H 0.11 2.64 6.47 -52.48 -0.34 2.30 16 40 H 0.29 6.05 8.30 -40.82 -0.34 5.71 16 41 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 42 H 0.10 1.93 7.68 -52.49 -0.40 1.53 16 LS Contribution 372.90 15.07 5.62 5.62 Total: -1.00 -30.10 372.90 -10.42 -40.52 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -5.11 Total: 15.26 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: -1.41 Total: -33.43 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.62 Total: -32.49 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -2.34 Total: -51.70 kcal Atomic # 14 Polarization: 16.29 SS G_CDS: -5.04 Total: 11.25 kcal Atomic # 16 Polarization: 47.73 SS G_CDS: -2.77 Total: 44.96 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.10 -10.42 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121222007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.336 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds