Wall clock time and date at job start Wed Apr 1 2020 03:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81395 * 102.99932 * 2 1 4 4 C 1.53001 * 109.47090 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47436 * 60.00071 * 4 3 2 6 6 C 1.52999 * 109.47089 * 179.97438 * 4 3 2 7 7 C 1.52994 * 109.47265 * 181.21309 * 6 4 3 8 8 O 1.42894 * 109.47463 * 181.97085 * 7 6 4 9 9 N 1.46499 * 109.47015 * 299.99714 * 4 3 2 10 10 S 1.65599 * 119.99967 * 114.88678 * 9 4 3 11 11 O 1.42103 * 106.40145 * 176.07062 * 10 9 4 12 12 O 1.42098 * 106.40283 * 308.99462 * 10 9 4 13 13 C 1.76201 * 107.21689 * 62.53395 * 10 9 4 14 14 C 1.38634 * 119.74776 * 266.18369 * 13 10 9 15 15 C 1.37623 * 120.24670 * 179.71692 * 14 13 10 16 16 C 1.40708 * 119.74706 * 0.57428 * 15 14 13 17 17 C 1.41390 * 120.24607 * 179.68275 * 16 15 14 18 18 H 1.07998 * 120.00135 * 156.74199 * 17 16 15 19 19 C 1.39947 * 120.00266 * 336.73124 * 17 16 15 20 20 N 1.30822 * 119.99597 * 331.75331 * 19 17 16 21 21 Si 1.86794 * 120.00141 * 151.75088 * 19 17 16 22 22 H 1.48502 * 109.47017 * 94.99393 * 21 19 17 23 23 H 1.48499 * 109.46963 * 214.99033 * 21 19 17 24 24 H 1.48499 * 109.47337 * 334.98999 * 21 19 17 25 25 C 1.40719 * 119.51098 * 359.69696 * 16 15 14 26 26 C 1.37627 * 119.74365 * 0.02562 * 25 16 15 27 27 H 1.09005 * 109.47190 * 60.00187 * 1 2 3 28 28 H 1.08996 * 109.47253 * 300.00115 * 1 2 3 29 29 H 1.09006 * 109.46945 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47106 * 300.00224 * 3 2 1 31 31 H 1.09001 * 109.47242 * 59.99699 * 3 2 1 32 32 H 1.09001 * 109.47328 * 301.21950 * 6 4 3 33 33 H 1.09006 * 109.47050 * 61.21325 * 6 4 3 34 34 H 1.09005 * 109.47281 * 301.97166 * 7 6 4 35 35 H 1.08994 * 109.47090 * 61.96959 * 7 6 4 36 36 H 0.96703 * 114.00562 * 179.97438 * 8 7 6 37 37 H 0.97002 * 119.99894 * 294.89138 * 9 4 3 38 38 H 1.08004 * 119.87814 * 359.97438 * 14 13 10 39 39 H 1.08005 * 120.12670 * 180.27318 * 15 14 13 40 40 H 0.97006 * 119.99913 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.13187 * 179.97438 * 25 16 15 42 42 H 1.07992 * 119.87317 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.1609 1.4704 -0.8908 6 6 4.0865 3.4307 -0.0013 7 6 5.6063 3.6032 -0.0325 8 8 5.9289 4.9946 0.0132 9 7 4.3059 1.3087 1.1952 10 16 5.3051 -0.0035 1.0461 11 8 5.7514 -0.3190 2.3578 12 8 4.6262 -0.9320 0.2117 13 6 6.7276 0.5235 0.1498 14 6 6.7729 0.3608 -1.2262 15 6 7.8764 0.7740 -1.9372 16 6 8.9663 1.3523 -1.2608 17 6 10.1081 1.7744 -1.9800 18 1 10.7594 2.5293 -1.5647 19 6 10.3946 1.2139 -3.2299 20 7 10.0070 -0.0051 -3.5044 21 14 11.3304 2.2061 -4.5062 22 1 12.7768 1.8800 -4.4237 23 1 10.8242 1.8719 -5.8616 24 1 11.1341 3.6553 -4.2480 25 6 8.9117 1.5073 0.1368 26 6 7.7955 1.0921 0.8266 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8031 2.2371 -0.8900 31 1 1.8031 2.2371 0.8900 32 1 3.6489 3.9043 -0.8801 33 1 3.6863 3.8964 0.8994 34 1 6.0470 3.0997 0.8280 35 1 6.0026 3.1684 -0.9500 36 1 6.8780 5.1791 -0.0029 37 1 4.0937 1.6593 2.0744 38 1 5.9373 -0.0881 -1.7427 39 1 7.9078 0.6503 -3.0097 40 1 10.2052 -0.3935 -4.3708 41 1 9.7427 1.9495 0.6661 42 1 7.7515 1.2096 1.8992 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121222007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:10 Heat of formation + Delta-G solvation = -142.640387 kcal Electronic energy + Delta-G solvation = -26817.077864 eV Core-core repulsion = 23013.595093 eV Total energy + Delta-G solvation = -3803.482771 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.44306 -38.77568 -37.98877 -36.90720 -36.63624 -35.81149 -32.09292 -31.84823 -31.29176 -30.20574 -29.39144 -27.57822 -24.33970 -23.31300 -22.90056 -22.13874 -20.49365 -19.40551 -18.70956 -18.27747 -18.09691 -17.38535 -17.16542 -16.78056 -16.23817 -15.83760 -15.62531 -15.31338 -15.15967 -14.94479 -14.87114 -14.59895 -14.20293 -14.11414 -13.99685 -13.96489 -13.47293 -13.14483 -13.07119 -13.01133 -12.94642 -12.82974 -12.78276 -12.48198 -12.45422 -12.29370 -12.04596 -11.79741 -11.49907 -11.30238 -11.11159 -10.83384 -10.58410 -10.44338 -9.79446 -9.50624 -8.96078 -8.52948 -6.60125 -0.23531 0.53904 0.85978 1.08919 1.34719 1.41740 1.53485 1.83317 2.10258 2.27349 2.52563 3.02085 3.23890 3.53902 3.71952 3.88119 3.96170 4.16696 4.28062 4.29200 4.34861 4.38512 4.42201 4.43585 4.63174 4.72648 4.79829 4.83017 4.88960 4.95327 4.97358 5.09573 5.17504 5.26955 5.28243 5.54639 5.63339 5.78765 5.94067 6.17100 6.22725 6.50105 6.69528 6.83011 6.83883 8.02163 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.003646 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.584450 B = 7677.443991 C = 7945.632478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.299 6.299 3 C -0.087 4.087 4 C 0.178 3.822 5 H 0.083 0.917 6 C -0.112 4.112 7 C 0.074 3.926 8 O -0.588 6.588 9 N -1.102 6.102 10 S 2.712 3.288 11 O -1.012 7.012 12 O -0.981 6.981 13 C -0.795 4.795 14 C -0.010 4.010 15 C -0.211 4.211 16 C 0.120 3.880 17 C -0.469 4.469 18 H 0.094 0.906 19 C 0.044 3.956 20 N -0.785 5.785 21 Si 0.981 3.019 22 H -0.259 1.259 23 H -0.264 1.264 24 H -0.252 1.252 25 C -0.254 4.254 26 C 0.005 3.995 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.032 0.968 36 H 0.392 0.608 37 H 0.424 0.576 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.300 0.700 41 H 0.108 0.892 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.851 7.921 2.306 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.074 6.074 3 C -0.237 4.237 4 C 0.069 3.931 5 H 0.101 0.899 6 C -0.152 4.152 7 C -0.004 4.004 8 O -0.395 6.395 9 N -0.861 5.861 10 S 2.808 3.192 11 O -1.003 7.003 12 O -0.970 6.970 13 C -0.888 4.888 14 C -0.030 4.030 15 C -0.231 4.231 16 C 0.116 3.884 17 C -0.495 4.495 18 H 0.112 0.888 19 C -0.178 4.178 20 N -0.407 5.407 21 Si 0.800 3.200 22 H -0.184 1.184 23 H -0.189 1.189 24 H -0.175 1.175 25 C -0.274 4.274 26 C -0.015 4.015 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.240 0.760 37 H 0.261 0.739 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.005 5.937 2.333 14.485 hybrid contribution 0.940 1.304 -0.631 1.727 sum -12.065 7.241 1.702 14.174 Atomic orbital electron populations 1.23457 0.92921 1.06889 1.05770 1.88569 1.08609 1.12008 1.98192 1.23863 0.98106 0.94190 1.07566 1.20369 0.91784 0.93677 0.87236 0.89884 1.21761 0.94424 0.93780 1.05246 1.22202 0.96452 0.81666 1.00121 1.86280 1.30824 1.24769 1.97657 1.55422 1.64291 1.51670 1.14748 1.00702 0.73070 0.73201 0.72271 1.93453 1.82934 1.83575 1.40288 1.93521 1.73595 1.60326 1.69594 1.29495 1.20550 1.32894 1.05905 1.20330 0.96993 0.93474 0.92196 1.21091 0.94637 1.08806 0.98545 1.18037 0.92134 0.86343 0.91869 1.20184 1.07909 1.19317 1.02069 0.88824 1.26971 0.95509 0.94621 1.00689 1.69902 1.33692 1.13097 1.24010 0.85200 0.78504 0.79823 0.76456 1.18371 1.18866 1.17474 1.21133 0.99673 1.12817 0.93800 1.20324 0.91851 0.91580 0.97724 0.89405 0.89390 0.88125 0.86882 0.87253 0.88728 0.88796 0.93498 0.94944 0.75952 0.73943 0.87161 0.88530 0.88883 0.87414 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.00 10.76 113.37 1.22 -0.78 16 2 S -0.30 -7.86 20.17 -56.49 -1.14 -9.00 16 3 C -0.09 -1.65 5.63 71.98 0.41 -1.24 16 4 C 0.18 4.18 2.34 44.99 0.11 4.28 16 5 H 0.08 2.31 7.63 -2.39 -0.02 2.29 16 6 C -0.11 -2.34 5.29 30.59 0.16 -2.18 16 7 C 0.07 2.04 6.42 71.98 0.46 2.50 16 8 O -0.59 -15.80 13.66 -148.98 -2.03 -17.84 16 9 N -1.10 -29.30 4.17 -169.39 -0.71 -30.01 16 10 S 2.71 100.97 5.56 -56.49 -0.31 100.65 16 11 O -1.01 -42.60 17.35 -128.00 -2.22 -44.82 16 12 O -0.98 -40.97 15.10 -128.00 -1.93 -42.90 16 13 C -0.80 -33.05 4.99 22.46 0.11 -32.93 16 14 C -0.01 -0.44 9.31 22.22 0.21 -0.24 16 15 C -0.21 -10.27 8.76 22.73 0.20 -10.07 16 16 C 0.12 5.87 5.56 -21.29 -0.12 5.75 16 17 C -0.47 -22.45 8.98 23.46 0.21 -22.24 16 18 H 0.09 4.22 7.98 -2.91 -0.02 4.20 16 19 C 0.04 1.99 4.88 85.26 0.42 2.40 16 20 N -0.79 -37.50 11.57 21.83 0.25 -37.24 16 21 Si 0.98 33.43 29.64 68.60 2.03 35.47 16 22 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 23 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 24 H -0.25 -8.36 7.11 99.48 0.71 -7.65 16 25 C -0.25 -11.46 9.80 22.73 0.22 -11.24 16 26 C 0.00 0.21 8.57 22.22 0.19 0.40 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.05 1.36 6.19 -2.38 -0.01 1.35 16 35 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.39 8.56 9.12 -74.05 -0.68 7.88 16 37 H 0.42 9.03 8.96 -96.74 -0.87 8.16 16 38 H 0.11 4.68 7.52 -2.91 -0.02 4.66 16 39 H 0.10 4.88 6.47 -2.91 -0.02 4.86 16 40 H 0.30 12.74 8.30 -92.70 -0.77 11.97 16 41 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 42 H 0.12 4.46 7.68 -2.91 -0.02 4.44 16 Total: -1.00 -66.27 372.90 -2.76 -69.03 By element: Atomic # 1 Polarization: 42.74 SS G_CDS: -0.49 Total: 42.25 kcal Atomic # 6 Polarization: -69.37 SS G_CDS: 3.79 Total: -65.58 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -0.45 Total: -67.26 kcal Atomic # 8 Polarization: -99.37 SS G_CDS: -6.19 Total: -105.56 kcal Atomic # 14 Polarization: 33.43 SS G_CDS: 2.03 Total: 35.47 kcal Atomic # 16 Polarization: 93.11 SS G_CDS: -1.45 Total: 91.65 kcal Total: -66.27 -2.76 -69.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121222007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.615 kcal (2) G-P(sol) polarization free energy of solvation -66.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds