Wall clock time and date at job start Wed Apr 1 2020 02:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47090 * 2 1 4 4 C 1.50704 * 109.47098 * 119.99837 * 2 1 3 5 5 H 1.07991 * 120.00449 * 120.00148 * 4 2 1 6 6 C 1.37885 * 119.99572 * 300.00038 * 4 2 1 7 7 N 1.31511 * 119.99934 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99585 * 180.02562 * 6 4 2 9 9 H 1.48512 * 109.47159 * 269.99682 * 8 6 4 10 10 H 1.48496 * 109.47620 * 29.99458 * 8 6 4 11 11 H 1.48507 * 109.47181 * 149.99955 * 8 6 4 12 12 N 1.46500 * 109.47288 * 239.99456 * 2 1 3 13 13 C 1.34771 * 119.99798 * 84.99822 * 12 2 1 14 14 O 1.21359 * 120.00260 * 0.02562 * 13 12 2 15 15 C 1.49360 * 120.00296 * 180.02562 * 13 12 2 16 16 O 1.21384 * 119.99498 * 0.02562 * 15 13 12 17 17 N 1.34771 * 120.00296 * 179.97438 * 15 13 12 18 18 C 1.39745 * 120.00034 * 175.38810 * 17 15 13 19 19 C 1.39050 * 120.00914 * 214.84338 * 18 17 15 20 20 C 1.38190 * 120.21138 * 179.71930 * 19 18 17 21 21 C 1.38047 * 120.22278 * 0.55629 * 20 19 18 22 22 C 1.39570 * 120.00966 * 359.71747 * 21 20 19 23 23 C 1.47872 * 120.10328 * 180.02562 * 22 21 20 24 24 N 1.30225 * 125.47162 * 179.67243 * 23 22 21 25 25 C 1.31307 * 117.04643 * 179.84389 * 24 23 22 26 26 C 1.33724 * 115.84410 * 0.45320 * 25 24 23 27 27 S 1.76173 * 125.47684 * 359.97438 * 23 22 21 28 28 C 1.38656 * 120.00426 * 35.11512 * 18 17 15 29 29 H 1.08999 * 109.47546 * 300.00424 * 1 2 3 30 30 H 1.09004 * 109.47477 * 60.00473 * 1 2 3 31 31 H 1.09000 * 109.47575 * 180.02562 * 1 2 3 32 32 H 0.97000 * 119.99653 * 180.02562 * 7 6 4 33 33 H 0.97002 * 120.00239 * 265.00390 * 12 2 1 34 34 H 0.97002 * 119.99941 * 355.39560 * 17 15 13 35 35 H 1.08000 * 119.89168 * 359.97438 * 19 18 17 36 36 H 1.07996 * 119.88608 * 180.24833 * 20 19 18 37 37 H 1.08006 * 119.99499 * 179.74520 * 21 20 19 38 38 H 1.07997 * 122.08038 * 180.19570 * 25 24 23 39 39 H 1.08000 * 125.88974 * 179.78446 * 26 25 24 40 40 H 1.08001 * 120.11123 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9435 0.8304 2.6033 8 14 2.3224 -1.1193 4.0080 9 1 1.3446 -2.1613 4.4125 10 1 3.6306 -1.7564 3.7121 11 1 2.4871 -0.1399 5.1121 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0185 -2.3571 14 8 1.8588 1.1591 -2.4116 15 6 2.6444 -0.7227 -3.5767 16 8 2.9322 -1.9007 -3.5223 17 7 2.7726 -0.0506 -4.7378 18 6 3.3280 -0.6827 -5.8535 19 6 4.1121 0.0415 -6.7446 20 6 4.6682 -0.5807 -7.8461 21 6 4.4396 -1.9227 -8.0752 22 6 3.6494 -2.6573 -7.1898 23 6 3.4036 -4.0951 -7.4328 24 7 2.6911 -4.8786 -6.6751 25 6 2.5791 -6.1319 -7.0503 26 6 3.2241 -6.4640 -8.1736 27 16 4.0339 -5.0249 -8.7900 28 6 3.0928 -2.0311 -6.0750 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.7094 1.1620 3.4843 33 1 2.2490 -1.6319 -1.1525 34 1 2.4794 0.8720 -4.7991 35 1 4.2904 1.0928 -6.5731 36 1 5.2796 -0.0140 -8.5327 37 1 4.8727 -2.4044 -8.9394 38 1 2.0053 -6.8510 -6.4845 39 1 3.2448 -7.4447 -8.6255 40 1 2.4801 -2.5945 -5.3868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122813100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:55 Heat of formation + Delta-G solvation = 8.868967 kcal Electronic energy + Delta-G solvation = -26050.526437 eV Core-core repulsion = 22150.462405 eV Total energy + Delta-G solvation = -3900.064032 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.89858 -39.82975 -39.00914 -37.87891 -35.46162 -34.69441 -32.50295 -32.34179 -30.17847 -29.47617 -29.12035 -25.71817 -25.37502 -24.96593 -23.11047 -22.23310 -20.81397 -20.06937 -19.57199 -18.74445 -18.37548 -17.11075 -16.67418 -16.31267 -15.90813 -15.69239 -15.50476 -15.21568 -14.78632 -14.74346 -14.34804 -14.18059 -13.81128 -13.56051 -13.35111 -13.21333 -12.89098 -12.49528 -12.26029 -11.89303 -11.81200 -11.67476 -11.22575 -11.11202 -11.00191 -10.82248 -10.66474 -10.37988 -10.27809 -10.02461 -9.95176 -9.56691 -9.16346 -9.09583 -8.64152 -8.61045 -8.32040 -8.14493 -6.18280 -4.27785 -0.05275 0.97668 0.99327 1.27305 1.38930 1.84172 2.59526 2.68275 3.23685 3.30458 3.33825 3.50819 3.69573 3.73169 4.04062 4.32634 4.58385 4.70290 4.81953 4.86577 4.98928 5.05094 5.14919 5.15778 5.21423 5.29956 5.61825 5.84907 5.99540 6.06650 6.16262 6.22827 6.70306 6.71407 6.83374 7.00401 7.04329 7.19787 7.38291 7.46520 7.60974 7.75862 7.88115 8.03924 8.41585 8.59202 8.83572 9.39258 10.87781 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015036 B = 0.002288 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.792396 B =12232.472296 C =13511.339858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.065 0.935 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.284 1.284 12 N -0.667 5.667 13 C 0.496 3.504 14 O -0.535 6.535 15 C 0.506 3.494 16 O -0.498 6.498 17 N -0.652 5.652 18 C 0.147 3.853 19 C -0.124 4.124 20 C -0.098 4.098 21 C -0.114 4.114 22 C -0.017 4.017 23 C 0.125 3.875 24 N -0.459 5.459 25 C 0.044 3.956 26 C -0.253 4.253 27 S 0.080 5.920 28 C -0.074 4.074 29 H 0.095 0.905 30 H 0.017 0.983 31 H 0.030 0.970 32 H 0.266 0.734 33 H 0.403 0.597 34 H 0.425 0.575 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.177 0.823 39 H 0.179 0.821 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.107 -7.862 -25.012 26.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.575 4.575 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.210 1.210 12 N -0.315 5.315 13 C 0.274 3.726 14 O -0.414 6.414 15 C 0.289 3.711 16 O -0.371 6.371 17 N -0.300 5.300 18 C 0.053 3.947 19 C -0.146 4.146 20 C -0.117 4.117 21 C -0.135 4.135 22 C -0.021 4.021 23 C -0.150 4.150 24 N -0.172 5.172 25 C -0.107 4.107 26 C -0.392 4.392 27 S 0.336 5.664 28 C -0.097 4.097 29 H 0.113 0.887 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.263 0.737 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.143 0.857 38 H 0.194 0.806 39 H 0.197 0.803 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.374 -7.406 -25.145 26.977 hybrid contribution -0.207 -1.254 1.252 1.784 sum 6.167 -8.660 -23.893 26.152 Atomic orbital electron populations 1.22102 0.97781 0.99616 1.01235 1.18988 0.91472 0.94133 0.79310 0.92759 1.21196 1.32809 1.13487 0.90014 0.91724 1.24876 0.94695 0.94916 0.99099 1.69890 1.35748 1.22316 1.24090 0.86391 0.79294 0.79247 0.81879 1.20439 1.19734 1.21015 1.46514 1.61144 1.14576 1.09309 1.19618 0.81196 0.87276 0.84496 1.90730 1.50828 1.15175 1.84674 1.21038 0.78117 0.87190 0.84733 1.90768 1.46412 1.15073 1.84830 1.43215 1.60661 1.17586 1.08494 1.17674 0.96179 0.92578 0.88298 1.21148 0.96979 1.00852 0.95574 1.20784 0.99639 0.93984 0.97283 1.21106 0.98888 0.94606 0.98881 1.17638 1.00402 0.87657 0.96430 1.25887 0.98310 0.97359 0.93461 1.66567 1.17132 1.03916 1.29565 1.21754 1.01093 0.92329 0.95570 1.27053 1.06520 1.03191 1.02392 1.84842 1.50230 1.02680 1.28672 1.21466 0.98693 0.93521 0.96018 0.88697 0.96438 0.95059 0.92441 0.76259 0.73690 0.84765 0.84702 0.85679 0.80599 0.80332 0.82635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.56 2.56 -69.08 -0.18 6.38 16 3 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 4 C -0.54 -14.17 8.73 -34.44 -0.30 -14.47 16 5 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.38 11.32 55.43 0.63 -23.75 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.56 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 N -0.67 -14.29 5.06 -55.40 -0.28 -14.57 16 13 C 0.50 9.86 7.85 -11.63 -0.09 9.77 16 14 O -0.54 -11.61 16.14 5.49 0.09 -11.53 16 15 C 0.51 8.60 7.73 -11.63 -0.09 8.51 16 16 O -0.50 -9.23 13.91 5.47 0.08 -9.16 16 17 N -0.65 -8.84 5.32 -10.32 -0.05 -8.89 16 18 C 0.15 1.85 6.29 -83.80 -0.53 1.32 16 19 C -0.12 -1.17 9.96 -39.30 -0.39 -1.56 16 20 C -0.10 -0.79 10.02 -39.67 -0.40 -1.19 16 21 C -0.11 -1.04 9.60 -39.15 -0.38 -1.41 16 22 C -0.02 -0.20 5.87 -105.01 -0.62 -0.82 16 23 C 0.12 1.50 7.35 -14.29 -0.11 1.40 16 24 N -0.46 -6.13 10.14 -11.36 -0.12 -6.25 16 25 C 0.04 0.45 11.25 -19.36 -0.22 0.23 16 26 C -0.25 -2.06 11.35 29.15 0.33 -1.73 16 27 S 0.08 0.70 22.39 -107.50 -2.41 -1.71 16 28 C -0.07 -1.02 8.32 -38.98 -0.32 -1.34 16 29 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.40 8.11 8.01 -40.82 -0.33 7.78 16 34 H 0.42 4.96 8.30 -40.82 -0.34 4.63 16 35 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.87 7.29 -52.48 -0.38 0.49 16 38 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.18 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.16 2.55 5.98 -52.49 -0.31 2.23 16 LS Contribution 364.37 15.07 5.49 5.49 Total: -1.00 -31.38 364.37 -8.78 -40.16 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -4.15 Total: 11.11 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -3.03 Total: 3.53 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.18 Total: -53.46 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: 0.16 Total: -20.68 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.41 Total: -1.71 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.38 -8.78 -40.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122813100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.029 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds